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Fixes #3451 Replace 'neuronal brush cell' with 'unipolar brush cell' #3452

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merged 2 commits into from
Dec 17, 2024
Merged

Fixes #3451 Replace 'neuronal brush cell' with 'unipolar brush cell' #3452

merged 2 commits into from
Dec 17, 2024

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Caroline-99
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  • Imported the term 'unipolar brush cell'
  • Replaced 'nueronal brush cell' with 'unipolar brush cell'

@Caroline-99
Fixes #3451
03c38b6 
Imported the term 'unipolar brush cell'
replaced 'nueronal brush cell' with 'unipolar brush cell'
@Caroline-99 Caroline-99 linked an issue Dec 17, 2024 that may be closed by this pull request
granular layer of cerebellar cortex is using a obsoleted CL term neuronal brush cell #3451
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@Caroline-99 Caroline-99 self-assigned this Dec 17, 2024
@Caroline-99 Caroline-99 mentioned this pull request Dec 17, 2024
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@Caroline-99
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#gogoeditdiff

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Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
  • Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-12-17/uberon-base.owl
  • Loaded from: file:/__w/uberon/uberon/src/ontology/uberon-base-main.owl/uberon-base.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
  • Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-12-17/uberon-base.owl
  • Loaded from: file:/__w/uberon/uberon/src/ontology/uberon-base-pr.owl/uberon-base.owl

Ontology imports

Ontology annotations

CL_0000555 http://purl.obolibrary.org/obo/CL_0000555

Removed

CL_4023161 http://purl.obolibrary.org/obo/CL_4023161

Added

buccal mucosa http://purl.obolibrary.org/obo/UBERON_0006956

Added

cardiac muscle of left atrium http://purl.obolibrary.org/obo/UBERON_0003380

Added

conus artery http://purl.obolibrary.org/obo/UBERON_0039232

Added

cranial nerve II http://purl.obolibrary.org/obo/UBERON_0000941

Added

entire sense organ system http://purl.obolibrary.org/obo/UBERON_0004456

Added

exocrine system http://purl.obolibrary.org/obo/UBERON_0002330

Added

gingiva http://purl.obolibrary.org/obo/UBERON_0001828

Added

gland of digestive tract http://purl.obolibrary.org/obo/UBERON_0003408

Added

granular layer of cerebellar cortex http://purl.obolibrary.org/obo/UBERON_0002956

Removed

Added

gustatory system http://purl.obolibrary.org/obo/UBERON_0001033

Added

major salivary gland http://purl.obolibrary.org/obo/UBERON_0001829

Added

minor salivary gland http://purl.obolibrary.org/obo/UBERON_0001830

Added

moderator band http://purl.obolibrary.org/obo/UBERON_8470002

Added

mouth http://purl.obolibrary.org/obo/UBERON_0000165

Added

mouth mucosa http://purl.obolibrary.org/obo/UBERON_0003729

Added

nasopharynx http://purl.obolibrary.org/obo/UBERON_0001728

Added

nervous system http://purl.obolibrary.org/obo/UBERON_0001016

Added

neuron projection bundle connecting eye with brain http://purl.obolibrary.org/obo/UBERON_0004904

Removed

obsolete median fin skeleton http://purl.obolibrary.org/obo/UBERON_0002543

Removed

Added

obsolete regional part of gustatory epithelium http://purl.obolibrary.org/obo/UBERON_0025182

Removed

Added

obsolete tuber http://purl.obolibrary.org/obo/UBERON_0000380

Removed

Added

oral gland http://purl.obolibrary.org/obo/UBERON_0010047

Added

proximo-distal subdivision of respiratory tract http://purl.obolibrary.org/obo/UBERON_0000072

Added

saliva-secreting gland http://purl.obolibrary.org/obo/UBERON_0001044

Added

sensory system http://purl.obolibrary.org/obo/UBERON_0001032

Added

skeletal system http://purl.obolibrary.org/obo/UBERON_0001434

Added

tongue http://purl.obolibrary.org/obo/UBERON_0001723

Added

visual system http://purl.obolibrary.org/obo/UBERON_0002104

Added

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Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
  • Version IRI: None
  • Loaded from: file:/__w/uberon/uberon/master/src/ontology/uberon-edit.obo

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
  • Version IRI: None
  • Loaded from: file:/__w/uberon/uberon/branch/src/ontology/uberon-edit.obo

Ontology imports

Ontology annotations

granular layer of cerebellar cortex http://purl.obolibrary.org/obo/UBERON_0002956

Removed

Added

neuronal brush cell http://purl.obolibrary.org/obo/CL_0000555

Removed

obsolete median fin skeleton http://purl.obolibrary.org/obo/UBERON_0002543

Removed

Added

obsolete regional part of gustatory epithelium http://purl.obolibrary.org/obo/UBERON_0025182

Removed

Added

obsolete tuber http://purl.obolibrary.org/obo/UBERON_0000380

Removed

Added

unipolar brush cell http://purl.obolibrary.org/obo/CL_4023161

Added

@Caroline-99
Merge branch 'master' into 3451-granular-layer-of-cerebellar-cortex-i…
3399565 
…s-using-a-obsoleted-cl-term-neuronal-brush-cell
@Caroline-99 Caroline-99 merged commit 442af7c into master Dec 17, 2024
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@aleixpuigb aleixpuigb aleixpuigb approved these changes

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granular layer of cerebellar cortex is using a obsoleted CL term neuronal brush cell
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@Caroline-99 @aleixpuigb