From fce595c1af4444c0df79bf554fda87f30bb2d22d Mon Sep 17 00:00:00 2001 From: Damien Goutte-Gattat Date: Thu, 17 Oct 2024 13:07:51 +0100 Subject: [PATCH] Remove injections about RO:has_skeleton. In RO, 'has skeleton' (RO:0002551) is domain-restricted to 'anatomical structure' (UBERON:0000061) and range-restricted to 'material anatomical entity' (UBERON:0000465). Currently, in Uberon we are overriding those restrictions by injecting tigher constraints: a domain restriction to 'organism subdivision' (UBERON:0000475) and a range restriction to 'subdivision of skeleton' (UBERON:0010912). A ticket to upstream those tighter restrictions to RO has gone nowhere in more than one year (https://github.com/oborel/obo-relations/issues/700). This PR removes the Uberon-injected restrictions and leaves it to RO to decide whether they should adopt them or not. Of note, the only inferred axiom that those tighter restrictions give us is this one: > 'nose' SubClassOf: 'organism subdivision' So we don't lose much by removing them until they are (maybe) added back directly by RO. Related to #2453 --- src/ontology/uberon-edit.obo | 2 -- 1 file changed, 2 deletions(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 29c5457f2..43eb64c87 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -225264,8 +225264,6 @@ is_metadata_tag: true id: has_skeleton name: has skeleton xref: RO:0002551 -domain: UBERON:0000475 ! organism subdivision -range: UBERON:0010912 ! subdivision of skeleton [Typedef] id: has_start