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xpoAnatomyTEMP terms #162

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seger opened this issue Feb 28, 2023 · 0 comments
Open

xpoAnatomyTEMP terms #162

seger opened this issue Feb 28, 2023 · 0 comments
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seger commented Feb 28, 2023 •
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The following terms specified in xpoAnatomyTEMP.tsv need to be replaced by permanent classes based on DOSDP patterns. New patterns will be requested as needed.

ID TEMP term PATO ID PATO term Pattern
☐ XPO:0115308 abnormally increased volume of brain PATO:0000595 increased volume abnormallyIncreasedVolumeOfAnatomicalEntity
☐ XPO:0115310 abnormally incomplete structure of forebrain PATO:0005013 incomplete structure
☐ XPO:0115314 abnormally undivided branchial crest PATO:0002034 undivided
☐ XPO:0115316 abnormally neoplastic epidermis PATO:0002011 neoplastic neoplasticAnatomicalEntity
☐ XPO:0115317 abnormally incomplete structure of epidermis PATO:0005013 incomplete structure
☐ XPO:0115340 abnormally irregular spatial pattern of somite PATO:0000330 irregular spatial pattern abnormalSpatialPatternOfAnatomicalEntity
☐ XPO:0115345 abnormally anteriorly mislocalised somite PATO:0001921 mislocalised anteriorly
☐ XPO:0115348 abnormally neoplastic somite PATO:0002011 neoplastic neoplasticAnatomicalEntity
☐ XPO:0115351 abnormally increased volume of heart PATO:0000595 increased volume abnormallyIncreasedVolumeOfAnatomicalEntity
☐ XPO:0115352 abnormally decreased volume of heart PATO:0000596 decreased volume abnormallyDecreasedVolumeOfAnatomicalEntity
☐ XPO:0115353 abnormally inverted heart PATO:0000625 inverted
☐ XPO:0115357 abnormally oblique orientation of heart PATO:0002481 oblique orientation
☐ XPO:0115358 abnormally decreased thickness of myocardium PATO:0000592 decreased thickness abnormallyDecreasedThicknessOfAnatomicalEntity
☐ XPO:0115362 abnormally decreased adhesivity of prechordal plate PATO:0002334 decreased adhesivity
☐ XPO:0115371 abnormally decreased volume of archenteron PATO:0000596 decreased volume abnormallyDecreasedVolumeOfAnatomicalEntity
☐ XPO:0115376 abnormally decreased length of hindgut PATO:0000574 decreased length abnormallyDecreasedLengthOfAnatomicalEntity
☐ XPO:0115383 abnormally anterioralized embryo PATO:0030000 anterioralized malformedAnatomicalEntityByType
☐ XPO:0115384 abnormally dorsalized embryo PATO:0030001 dorsalized malformedAnatomicalEntityByType
☐ XPO:0115385 abnormally posterioralized embryo PATO:0030002 posterioralized malformedAnatomicalEntityByType
☐ XPO:0115386 abnormally ventralized embryo PATO:0030003 ventralized malformedAnatomicalEntityByType
☐ XPO:0115387 abnormal agenesis of trachea PATO:0002291 agenesis abnormalAgenesisOfAnatomicalEntity
☐ XPO:0115388 abnormally decreased length of alimentary system PATO:0000574 decreased length abnormallyDecreasedLengthOfAnatomicalEntity
☐ XPO:0115391 abnormally undifferentiated alimentary system PATO:0002100 undifferentiated
☐ XPO:0115392 abnormally incomplete structure of alimentary system PATO:0005013 incomplete structure
☐ XPO:0115393 abnormally decreased volume of oral cavity PATO:0000596 decreased volume abnormallyDecreasedVolumeOfAnatomicalEntity
☐ XPO:0115397 abnormally decreased length of intestine PATO:0000574 decreased length abnormallyDecreasedLengthOfAnatomicalEntity
☐ XPO:0115407 multiple pancreases PATO:0002118 multiple
☐ XPO:0115411 abnormally anteriorly mislocalised skeletal muscle PATO:0001921 mislocalised anteriorly
☐ XPO:0115414 abnormally increased number of eye PATO:0000470 increased amount abnormallyIncreasedNumberOfAnatomicalEntity
☐ XPO:0115417 abnormally wholly ventralized eye PATO:0000636 wholly ventralized malformedAnatomicalEntityByType
☐ XPO:0115419 abnormally anteriorly mislocalised eye PATO:0001921 mislocalised anteriorly
☐ XPO:0115420 abnormally medially mislocalised eye PATO:0001924 mislocalised medially
☐ XPO:0115423 abnormally incomplete structure of eye PATO:0005013 incomplete structure
☐ XPO:0115430 abnormally loose axial mesoderm PATO:0001802 loose
☐ XPO:0115435 abnormally increased area of blastopore PATO:0002057 increased area
☐ XPO:0115436 abnormally delayed closure of blastopore PATO:0002135 delayed closure
☐ XPO:0115445 abnormally decreased coiling of foregut PATO:0001796 decreased coiling abnormallyDecreasedCoilingOfAnatomicalEntity
☐ XPO:0115446 abnormally duplicated cardiac mesoderm PATO:0001473 duplicated abnormallyDuplicatedAnatomicalEntity
☐ XPO:0115447 abnormally abaxially mislocalized cardiac mesoderm PATO:0002395 mislocalized abaxially
☐ XPO:0115457 abnormally increased volume of blastocoel PATO:0000595 increased volume abnormallyIncreasedVolumeOfAnatomicalEntity
☐ XPO:0115459 abnormally protruding central endoderm PATO:0001646 protruding out of abnormallyProtrudingAnatomicalEntity
☐ XPO:0115463 abnormally decreased height of anterior neural fold PATO:0000569 decreased height abnormallyDecreasedHeightOfAnatomicalEntity
☐ XPO:0115467 abnormally wholly dorsalized trunk somite PATO:0000620 wholly dorsalized malformedAnatomicalEntityByType
☐ XPO:0115471 abnormally disorganized myotome PATO:0000937 disorganized disorganizedAnatomicalEntity
☐ XPO:0115473 abnormally delayed phase of Mullerian duct PATO:0001542 delayed phase
☐ XPO:0115474 abnormally decreased diameter of Mullerian duct PATO:0001715 decreased diameter
☐ XPO:0115482 abnormally pigmented optic stalk PATO:0002248 pigmented abnormalPigmentationOfAnatomicalEntity
☐ XPO:0115484 abnormally irregular spatial pattern of cranial neural crest PATO:0000330 irregular spatial pattern abnormalSpatialPatternOfAnatomicalEntity
☐ XPO:0115491 abnormally increased distribution of connective tissue PATO:0001671 increased distribution
☐ XPO:0115494 abnormally incomplete closure of proctodeum PATO:0000609 closure incomplete abnormallyIncompleteClosureOfAnatomicalEntity
☐ XPO:0115495 abnormally protruding proctodeum PATO:0001598 protruding abnormallyProtrudingAnatomicalEntity
☐ XPO:0115505 dead whole organism PATO:0001422 dead
☐ XPO:0115507 abnormally laterally curved whole organism PATO:0001649 curved lateral abnormallyCurvedAnatomicalEntityByOrientation
☐ XPO:0115508 abnormally peramorphic growth of whole organism PATO:0001752 peramorphic growth
☐ XPO:0115509 abnormally semi-viable whole organism PATO:0001770 semi-viable
☐ XPO:0115510 abnormal degeneration of whole organism PATO:0002037 degeneration abnormalDegenerationOfAnatomicalEntity
☐ XPO:0115512 abnormally semi-erect whole organism PATO:0002260 semi erect
☐ XPO:0115526 abnormally incomplete structure of head PATO:0005013 incomplete structure
☐ XPO:0115533 abnormally nodular trunk PATO:0002125 nodular
☐ XPO:0115547 abnormally ventrally curved tail PATO:0001469 curved ventral abnormallyCurvedAnatomicalEntityByOrientation
☐ XPO:0115553 abnormally incomplete structure of tail PATO:0005013 incomplete structure
☐ XPO:0115558 abnormally incomplete structure of mouth PATO:0005013 incomplete structure
☐ XPO:0115566 abnormal variability of size of forelimb PATO:0001956 variability of size
☐ XPO:0115574 abnormal variability of size of hindlimb PATO:0001956 variability of size
☐ XPO:0115586 abnormally decreased volume of chondrocranium PATO:0000596 decreased volume abnormallyDecreasedVolumeOfAnatomicalEntity
☐ XPO:0115588 abnormally decreased mass of chondrocranium PATO:0001562 decreased mass abnormallyDecreasedMassOfAnatomicalEntity
☐ XPO:0115601 abnormally increased distribution of hindlimb bud PATO:0001671 increased distribution
☐ XPO:0115602 abnormally peramorphic growth of hindlimb bud PATO:0001752 peramorphic growth
☐ XPO:0115603 abnormal variability of size of hindlimb bud PATO:0001956 variability of size
☐ XPO:0115604 abnormally aplastic growth of hindlimb bud PATO:0002019 aplastic growth
☐ XPO:0115615 abnormally posteriorly mislocalised primordial germ cell PATO:0001922 mislocalised posteriorly
☐ XPO:0115617 abnormally posterioralized primordial germ cell PATO:0030002 posterioralized malformedAnatomicalEntityByType
☐ XPO:0115624 abnormally dilated cardiac ventricle PATO:0001571 dilated abnormallyDilatedAnatomicalEntity
☐ XPO:0115628 abnormally open neural tube PATO:0000610 open abnormallyOpenAnatomicalEntity
☐ XPO:0115630 abnormally delayed closure of neural tube PATO:0002135 delayed closure
☐ XPO:0115631 abnormally triangular radio-ulna PATO:0001875 triangular
☐ XPO:0115636 abnormally bent metatarsus PATO:0000617 bent abnormallyBentAnatomicalEntity
☐ XPO:0115639 abnormally triangular tibia-fibula PATO:0001875 triangular
☐ XPO:0115643 abnormally triangular femur PATO:0001875 triangular
☐ XPO:0115645 abnormally ventrally mislocalised retinal pigmented epithelium PATO:0001920 mislocalised ventrally
☐ XPO:0115648 abnormally increased amount of hypaxial muscle PATO:0000470 increased amount
☐ XPO:0115651 abnormally wholly dorsalized epaxial muscle PATO:0000620 wholly dorsalized malformedAnatomicalEntityByType
☐ XPO:0115659 abnormally ruffled dorsal fin PATO:0001799 ruffled
☐ XPO:0115660 abnormally incomplete structure of ventral tail fin PATO:0005013 incomplete structure
☐ XPO:0115661 abnormally ruffled ventral fin margin PATO:0001799 ruffled
☐ XPO:0115662 abnormally incomplete structure of ventral fin margin PATO:0005013 incomplete structure
☐ XPO:0115664 abnormally decreased mobility of migratory neural crest cell PATO:0002283 decreased mobility abnormallyDecreasedMobilityOfAnatomicalEntity
☐ XPO:0115668 abnormally increased mobility of non-neural ectoderm PATO:0002282 increased mobility abnormallyIncreasedMobilityOfAnatomicalEntity
☐ XPO:0115669 abnormally decreased mobility of non-neural ectoderm PATO:0002283 decreased mobility abnormallyDecreasedMobilityOfAnatomicalEntity
☐ XPO:0115671 poorly differentiated retinal ganglion cell PATO:0002106 poorly differentiated
☐ XPO:0115675 abnormally increased diameter of pronephric tubule PATO:0001714 increased diameter
☐ XPO:0115676 abnormally shortened pronephric tubule PATO:0002364 shortened
☐ XPO:0115683 abnormally increased branchiness of regenerating hindlimb PATO:0002285 increased branchiness
☐ XPO:0115684 abnormally shortened regenerating hindlimb PATO:0002364 shortened
☐ XPO:0115685 abnormally incomplete structure of regenerating hindlimb PATO:0005013 incomplete structure
☐ XPO:0115688 abnormally aplastic growth of regenerating tail PATO:0002019 aplastic growth
☐ XPO:0115689 abnormally incomplete structure of regenerating tail PATO:0005013 incomplete structure
☐ XPO:0115693 abnormally decreased thickness of apical ectodermal ridge PATO:0000592 decreased thickness abnormallyDecreasedThicknessOfAnatomicalEntity
☐ XPO:0115700 abnormally split primary heart field PATO:0001786 split
☐ XPO:0115702 abnormally decreased thickness of motor neuron PATO:0000592 decreased thickness abnormallyDecreasedThicknessOfAnatomicalEntity
☐ XPO:0115704 abnormally defasciculated motor neuron PATO:0001959 defasciculated
☐ XPO:0115721 abnormally inverted hindlimb zeugopod PATO:0000625 inverted
☐ XPO:0115723 abnormally incomplete structure of cranial muscle PATO:0005013 incomplete structure
☐ XPO:0115735 abnormally delayed closure of branchial basket PATO:0002135 delayed closure
☐ XPO:0115758 abnormally decreased mobility of melanoblast PATO:0002283 decreased mobility abnormallyDecreasedMobilityOfAnatomicalEntity
☐ XPO:0115760 abnormally simple of proximal tubule PATO:0001503 simple
☐ XPO:0115761 abnormally decreased coiling of proximal tubule PATO:0001796 decreased coiling abnormallyDecreasedCoilingOfAnatomicalEntity
☐ XPO:0115766 abnormally inverted external coil of the small intestine PATO:0000625 inverted
☐ XPO:0115768 abnormally abaxially mislocalized anterior foregut PATO:0002395 mislocalized abaxially
@seger seger self-assigned this Feb 28, 2023
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