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OBO format files should declare subsets and synonym types.
Merging imports into the OBO release file has led to OBO files that lack some of these declarations.
e.g. xpo.obo
has
[Term]id: CHEBI:24431name: chemical entitynamespace: chebi_ontologydef: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances."[]subset: 3_STARsynonym: "chemical entity"EXACT [UniProt]
but the subset is not declared in the header
This prevents consumption by a number of legacy tools. I suspect this is a general ODK release issue, possibly stemming from ROBOT filtering. It may prevent adoption of complete ODK release pipeline by some resources using legacy OBO loaders.
OBO format files should declare subsets and synonym types.
Merging imports into the OBO release file has led to OBO files that lack some of these declarations.
e.g. xpo.obo
has
but the subset is not declared in the header
This prevents consumption by a number of legacy tools. I suspect this is a general ODK release issue, possibly stemming from ROBOT filtering. It may prevent adoption of complete ODK release pipeline by some resources using legacy OBO loaders.
CC @matentzn
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