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ZFIN uses obsolete GO:0044424 and GO:0044420 #33

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matentzn opened this issue Nov 12, 2019 · 2 comments
Open

ZFIN uses obsolete GO:0044424 and GO:0044420 #33

matentzn opened this issue Nov 12, 2019 · 2 comments
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matentzn commented Nov 12, 2019 •
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http://amigo.geneontology.org/amigo/term/GO:0044420
http://amigo.geneontology.org/amigo/term/GO:0044424

These are the corresponding annotations:

ZDB-FISH-180927-4	olfm1a<sup>sa221/sa221</sup> ; olfm1b<sup>sa157/sa157</sup>(TL)	ZDB-STAGE-010723-32	Pharyngula:Prim-15	ZDB-STAGE-010723-32	Pharyngula:Prim-15	GO:0044424	obsolete intracellular part	BFO:0000050	part_of	ZFA:0000152	retina	PATO:0001997	decreased amount	abnormal							ZDB-PUB-171005-5	ZDB-EXP-180927-1	GO:0044424-BFO:0000050-ZFA:0000152-PATO:0001997-0-0-0	ZP:0110355
ZDB-FISH-150901-2115	gpc4<sup>m119/m119</sup>	ZDB-STAGE-010723-36	Larval:Day 5	ZDB-STAGE-010723-36	Larval:Day 5	GO:0044420	obsolete extracellular matrix component	BFO:0000050	part_of	ZFA:0001458	cranial cartilage	PATO:0000060	spatial pattern	normal							ZDB-PUB-110518-25	ZDB-EXP-041102-1	GO:0044420-BFO:0000050-ZFA:0001458-PATO:0000060-0-0-0	ZP:0110354
ZDB-FISH-150901-24314	ext2<sup>to273b/to273b</sup>	ZDB-STAGE-010723-36	Larval:Day 5	ZDB-STAGE-010723-36	Larval:Day 5	GO:0044420	obsolete extracellular matrix component	BFO:0000050	part_of	ZFA:0001458	cranial cartilage	PATO:0000060	spatial pattern	abnormal							ZDB-PUB-110518-25	ZDB-EXP-041102-1	GO:0044420-BFO:0000050-ZFA:0001458-PATO:0000060-0-0-0	ZP:0110354
ZDB-FISH-150901-2448	slc35b2<sup>to216z/to216z</sup>	ZDB-STAGE-010723-36	Larval:Day 5	ZDB-STAGE-010723-36	Larval:Day 5	GO:0044420	obsolete extracellular matrix component	BFO:0000050	part_of	ZFA:0001458	cranial cartilage	PATO:0000060	spatial pattern	abnormal							ZDB-PUB-110518-25	ZDB-EXP-041102-1	GO:0044420-BFO:0000050-ZFA:0001458-PATO:0000060-0-0-0	ZP:0110354
ZDB-FISH-150901-28521	b3gat3<sup>hi307Tg/hi307Tg</sup>	ZDB-STAGE-010723-36	Larval:Day 5	ZDB-STAGE-010723-36	Larval:Day 5	GO:0044420	obsolete extracellular matrix component	BFO:0000050	part_of	ZFA:0001458	cranial cartilage	PATO:0000060	spatial pattern	normal							ZDB-PUB-110518-25	ZDB-EXP-041102-1	GO:0044420-BFO:0000050-ZFA:0001458-PATO:0000060-0-0-0	ZP:0110354
ZDB-FISH-150901-29430	uxs1<sup>hi954Tg/hi954Tg</sup>	ZDB-STAGE-010723-36	Larval:Day 5	ZDB-STAGE-010723-36	Larval:Day 5	GO:0044420	obsolete extracellular matrix component	BFO:0000050	part_of	ZFA:0001458	cranial cartilage	PATO:0000060	spatial pattern	abnormal							ZDB-PUB-110518-25	ZDB-EXP-041102-1	GO:0044420-BFO:0000050-ZFA:0001458-PATO:0000060-0-0-0	ZP:0110354
@matentzn matentzn added the bug Something isn't working label Nov 12, 2019
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matentzn commented Feb 5, 2020

Seems fixed now? @ybradford

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@matentzn I don't think so? I see these still on my side. I'll re-check

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