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Pipeline should fail with a meaningful message if deprecated classes are used #7

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matentzn opened this issue Jan 2, 2019 · 1 comment
Open

Pipeline should fail with a meaningful message if deprecated classes are used #7

matentzn opened this issue Jan 2, 2019 · 1 comment
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enhancement New feature or request

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@matentzn
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matentzn commented Jan 2, 2019

@matentzn commented on Tue Nov 13 2018

The following classes are used across ZP, but are obsoleted/deprecated:

What should happen to the phenotypes? Note that only some of them are in the ZFIN annotations; some are in the current manual intermediate layer.

@drseb

BSPO_0000101
GO_0000046
GO_0004872
GO_0005578
GO_0005605
GO_0006200
GO_0007067
GO_0008002
GO_0008003
GO_0008105
GO_0015992
GO_0016023
GO_0016265
GO_0016271
GO_0016337
GO_0021865
GO_0021867
GO_0031512
GO_0031513
GO_0040023
GO_0042384
GO_0042516
GO_0043205
GO_0043206
GO_0071436
GO_0072372
GO_0090002
GO_0097369
GO_2001273
GO_2001274
GO_2001275
ZFA_0000283
ZFA_0005182
@matentzn matentzn mentioned this issue Jan 2, 2019
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As per meeting September 25th with @ybradford the pipeline should fail with a meaningful message if deprecated classes are used.

@matentzn matentzn self-assigned this Oct 23, 2019
@matentzn matentzn changed the title How to deal with deprecated terms in reference ontologies? Pipeline should fail with a meaningful message if deprecated classes are used Oct 23, 2019
@matentzn matentzn added the enhancement New feature or request label Nov 12, 2019
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