diff --git a/core.json b/core.json index d6ada61e..a2b744f1 100644 --- a/core.json +++ b/core.json @@ -7,12 +7,12 @@ "val" : "https://creativecommons.org/publicdomain/zero/1.0/" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-02-19" + "val" : "2023-02-22" }, { "pred" : "http://xmlns.com/foaf/0.1/homepage", "val" : "https://github.com/oborel/obo-relations/wiki/ROCore" } ], - "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-19/core.json" + "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-22/core.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/BFO_0000002", diff --git a/core.obo b/core.obo index df6a5d10..5adf5270 100644 --- a/core.obo +++ b/core.obo @@ -1,9 +1,9 @@ format-version: 1.2 -data-version: ro/releases/2023-02-19/core.owl +data-version: ro/releases/2023-02-22/core.owl ontology: ro/core property_value: http://purl.org/dc/elements/1.1/license https://creativecommons.org/publicdomain/zero/1.0/ property_value: http://xmlns.com/foaf/0.1/homepage "https://github.com/oborel/obo-relations/wiki/ROCore" xsd:anyURI -property_value: owl:versionInfo "2023-02-19" xsd:string +property_value: owl:versionInfo "2023-02-22" xsd:string [Term] id: BFO:0000002 diff --git a/core.owl b/core.owl index 31e29698..a5d262b3 100644 --- a/core.owl +++ b/core.owl @@ -13,9 +13,9 @@ xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" xmlns:terms="http://purl.org/dc/terms/"> - + - 2023-02-19 + 2023-02-22 https://github.com/oborel/obo-relations/wiki/ROCore diff --git a/omo_import.owl b/omo_import.owl deleted file mode 100644 index 1d64d4a8..00000000 --- a/omo_import.owl +++ /dev/null @@ -1,27 +0,0 @@ - -Prefix(:=) -Prefix(dc:=) -Prefix(dce:=) -Prefix(obo:=) -Prefix(owl:=) -Prefix(rdf:=) -Prefix(xml:=) -Prefix(xsd:=) -Prefix(cito:=) -Prefix(foaf:=) -Prefix(rdfs:=) -Prefix(skos:=) -Prefix(swrl:=) -Prefix(swrla:=) -Prefix(subsets:=) -Prefix(oboInOwl:=) - - -Ontology( - -Declaration(AnnotationProperty(obo:OMO_0002000)) - -AnnotationAssertion(obo:IAO_0000115 obo:OMO_0002000 "Links an annotation property to a SPARQL CONSTRUCT query which is meant to provide semantics for a shortcut relation.") -AnnotationAssertion(rdfs:label obo:OMO_0002000 "defined by construct") - -) \ No newline at end of file diff --git a/other_import.owl b/other_import.owl deleted file mode 100644 index 3821c591..00000000 --- a/other_import.owl +++ /dev/null @@ -1,378 +0,0 @@ - - - - This should be split into sub-modules - ad-hoc additional imports - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - OBO foundry unique label - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - anatomical entity - - - - - - - - connected anatomical structure - - - - - - - - - - - material anatomical entity - - - - - - - - - immaterial anatomical entity - - - - - - - - - - connected anatomical system - - - - - - - - - - multi-cell-part structure - - - - - - - - - - neuron projection bundle - - - - - - - - - organism or virus or viroid - - - - - - - - biological entity - - - - - - - - - - - - - - - multicellular anatomical structure - - - - - - - - - - - - - - - - cell - - - - - - - - - - neuron - - - - - - - - - biome - - - - - - - - - environmental system - - - - - - - - - molecular process - - - - - - - - - A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. - disease - - - - - - - - - quality (PATO) - - - - - - - - - - - - - - - - - shape - - - - - - - - - branched - - - - - - - - - branchiness - - - - - - - - - - - - - - - phenotype - - - - - - - - - curation status specification - - - ready for release - - - - - pending final vetting - - - - obsolescence reason specification - - - requires discussion - - - - - term replaced by - - - - - - - diff --git a/ro-base.json b/ro-base.json index 69deb094..0f9a8c13 100644 --- a/ro-base.json +++ b/ro-base.json @@ -16,12 +16,12 @@ "val" : "https://creativecommons.org/publicdomain/zero/1.0/" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-02-19" + "val" : "2023-02-22" }, { "pred" : "http://xmlns.com/foaf/0.1/homepage", "val" : " https://github.com/oborel/obo-relations/" } ], - "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-19/ro-base.json" + "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-22/ro-base.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/BFO_0000002", diff --git a/ro-base.obo b/ro-base.obo index 834cc834..3ba11b3f 100644 --- a/ro-base.obo +++ b/ro-base.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: ro/releases/2023-02-19/ro-base.owl +data-version: ro/releases/2023-02-22/ro-base.owl subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology "" @@ -12,7 +12,7 @@ property_value: http://purl.org/dc/elements/1.1/title "OBO Relations Ontology" x property_value: http://purl.org/dc/elements/1.1/type IAO:8000001 property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ property_value: http://xmlns.com/foaf/0.1/homepage " https://github.com/oborel/obo-relations/" xsd:anyURI -property_value: owl:versionInfo "2023-02-19" xsd:string +property_value: owl:versionInfo "2023-02-22" xsd:string [Term] id: BFO:0000002 diff --git a/ro-base.owl b/ro-base.owl index d5a4526f..742edd48 100644 --- a/ro-base.owl +++ b/ro-base.owl @@ -18,12 +18,12 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies. OBO Relations Ontology - 2023-02-19 + 2023-02-22 https://github.com/oborel/obo-relations/ diff --git a/ro-full.json b/ro-full.json index 34cbf834..2ddcecaf 100644 --- a/ro-full.json +++ b/ro-full.json @@ -13,12 +13,12 @@ "val" : "https://creativecommons.org/publicdomain/zero/1.0/" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-02-19" + "val" : "2023-02-22" }, { "pred" : "http://xmlns.com/foaf/0.1/homepage", "val" : " https://github.com/oborel/obo-relations/" } ], - "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-19/ro-full.json" + "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-22/ro-full.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/BFO_0000002", diff --git a/ro-full.obo b/ro-full.obo index b874c5f3..20f22335 100644 --- a/ro-full.obo +++ b/ro-full.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: ro/releases/2023-02-19/ro-full.owl +data-version: ro/releases/2023-02-22/ro-full.owl subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology "" @@ -11,7 +11,7 @@ property_value: http://purl.org/dc/elements/1.1/description "The OBO Relations O property_value: http://purl.org/dc/elements/1.1/title "OBO Relations Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ property_value: http://xmlns.com/foaf/0.1/homepage " https://github.com/oborel/obo-relations/" xsd:anyURI -property_value: owl:versionInfo "2023-02-19" xsd:string +property_value: owl:versionInfo "2023-02-22" xsd:string [Term] id: BFO:0000002 diff --git a/ro-full.owl b/ro-full.owl index 83a9affa..fd8ecb5d 100644 --- a/ro-full.owl +++ b/ro-full.owl @@ -20,11 +20,11 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies. OBO Relations Ontology - 2023-02-19 + 2023-02-22 https://github.com/oborel/obo-relations/ diff --git a/ro.json b/ro.json index ff13acf5..27e8538e 100644 --- a/ro.json +++ b/ro.json @@ -13,12 +13,12 @@ "val" : "https://creativecommons.org/publicdomain/zero/1.0/" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-02-19" + "val" : "2023-02-22" }, { "pred" : "http://xmlns.com/foaf/0.1/homepage", "val" : " https://github.com/oborel/obo-relations/" } ], - "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-19/ro.json" + "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-22/ro.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/BFO_0000002", diff --git a/ro.obo b/ro.obo index 3d8e2e77..5f03bb02 100644 --- a/ro.obo +++ b/ro.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2023-02-19 +data-version: releases/2023-02-22 subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology "" @@ -11,7 +11,7 @@ property_value: http://purl.org/dc/elements/1.1/description "The OBO Relations O property_value: http://purl.org/dc/elements/1.1/title "OBO Relations Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ property_value: http://xmlns.com/foaf/0.1/homepage " https://github.com/oborel/obo-relations/" xsd:anyURI -property_value: owl:versionInfo "2023-02-19" xsd:string +property_value: owl:versionInfo "2023-02-22" xsd:string [Term] id: BFO:0000002 diff --git a/ro.owl b/ro.owl index 9a8a8f42..6d70676e 100644 --- a/ro.owl +++ b/ro.owl @@ -20,11 +20,11 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies. OBO Relations Ontology - 2023-02-19 + 2023-02-22 https://github.com/oborel/obo-relations/ diff --git a/src/ontology/subsets/ro-causal.tsv b/src/ontology/subsets/ro-causal.tsv index 23e4cd33..49389a06 100644 --- a/src/ontology/subsets/ro-causal.tsv +++ b/src/ontology/subsets/ro-causal.tsv @@ -1,18 +1,18 @@ ?x ?label -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid1 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid18 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid22 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid26 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid33 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid37 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid40 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid5 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid52 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid58 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid61 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid64 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid67 -_:B61bb9a03X2D7dfeX2D46e6X2Dabe2X2Df8ae2f677ec5genid9 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid1 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid18 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid22 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid26 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid33 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid37 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid40 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid5 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid52 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid58 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid61 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid64 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid67 +_:B7386935aX2D2e60X2D44ceX2Dae14X2D1be5205b6c44genid9 diff --git a/src/ontology/subsets/ro-chado.json b/src/ontology/subsets/ro-chado.json index ed2616ac..93184cd1 100644 --- a/src/ontology/subsets/ro-chado.json +++ b/src/ontology/subsets/ro-chado.json @@ -4,9 +4,9 @@ "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-02-19" + "val" : "2023-02-22" } ], - "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-19/subsets/ro-chado.owl" + "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-22/subsets/ro-chado.owl" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/BFO_0000050", diff --git a/src/ontology/subsets/ro-chado.obo b/src/ontology/subsets/ro-chado.obo index 6dedea73..2a442e6b 100644 --- a/src/ontology/subsets/ro-chado.obo +++ b/src/ontology/subsets/ro-chado.obo @@ -11,7 +11,7 @@ property_value: http://purl.org/dc/elements/1.1/description "The OBO Relations O property_value: http://purl.org/dc/elements/1.1/title "OBO Relations Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ property_value: http://xmlns.com/foaf/0.1/homepage " https://github.com/oborel/obo-relations/" xsd:anyURI -property_value: owl:versionInfo "2023-02-19" xsd:string +property_value: owl:versionInfo "2023-02-22" xsd:string [Typedef] id: BFO:0000050 diff --git a/src/ontology/subsets/ro-chado.owl b/src/ontology/subsets/ro-chado.owl index 23ffa7b2..f1a6a72d 100644 --- a/src/ontology/subsets/ro-chado.owl +++ b/src/ontology/subsets/ro-chado.owl @@ -20,8 +20,8 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - - 2023-02-19 + + 2023-02-22 diff --git a/src/ontology/subsets/ro-developmental.tsv b/src/ontology/subsets/ro-developmental.tsv index 42281381..72cdad17 100644 --- a/src/ontology/subsets/ro-developmental.tsv +++ b/src/ontology/subsets/ro-developmental.tsv @@ -1,18 +1,18 @@ ?x ?label -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid1 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid18 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid22 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid26 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid33 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid37 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid40 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid5 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid52 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid58 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid61 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid64 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid67 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid9 +_:B7446b81fX2Db81fX2D4d83X2D9f42X2D6ea71e3b666fgenid1 +_:B7446b81fX2Db81fX2D4d83X2D9f42X2D6ea71e3b666fgenid18 +_:B7446b81fX2Db81fX2D4d83X2D9f42X2D6ea71e3b666fgenid22 +_:B7446b81fX2Db81fX2D4d83X2D9f42X2D6ea71e3b666fgenid26 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a/subsets/ro-chado.json +++ b/subsets/ro-chado.json @@ -4,9 +4,9 @@ "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-02-19" + "val" : "2023-02-22" } ], - "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-19/subsets/ro-chado.owl" + "version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-22/subsets/ro-chado.owl" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/BFO_0000050", diff --git a/subsets/ro-chado.obo b/subsets/ro-chado.obo index 6dedea73..2a442e6b 100644 --- a/subsets/ro-chado.obo +++ b/subsets/ro-chado.obo @@ -11,7 +11,7 @@ property_value: http://purl.org/dc/elements/1.1/description "The OBO Relations O property_value: http://purl.org/dc/elements/1.1/title "OBO Relations Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ property_value: http://xmlns.com/foaf/0.1/homepage " https://github.com/oborel/obo-relations/" xsd:anyURI -property_value: owl:versionInfo "2023-02-19" xsd:string +property_value: owl:versionInfo "2023-02-22" xsd:string [Typedef] id: BFO:0000050 diff --git a/subsets/ro-chado.owl b/subsets/ro-chado.owl index 23ffa7b2..f1a6a72d 100644 --- a/subsets/ro-chado.owl +++ b/subsets/ro-chado.owl @@ -20,8 +20,8 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - - 2023-02-19 + + 2023-02-22 diff --git a/subsets/ro-developmental.tsv b/subsets/ro-developmental.tsv index 42281381..72cdad17 100644 --- a/subsets/ro-developmental.tsv +++ b/subsets/ro-developmental.tsv @@ -1,18 +1,18 @@ ?x ?label -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid1 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid18 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid22 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid26 -_:B62f211d8X2D868aX2D4b4aX2D9f95X2D732551044d53genid33 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