diff --git a/CHANGES.md b/CHANGES.md index cd797637..24621407 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -1,3 +1,94 @@ +* 2017-06-14 Release + +commit 7bf8fa406e90c8a849dd4acf65b3cd5f8b82e381 +Author: Chris Mungall +Date: Mon Jun 12 08:50:53 2017 -0700 + + NR: realized-in-response-to + + gitowl || subject: http://purl.obolibrary.org/obo/RO_0009501 + gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0009501 "Marie Angelique Laporte") + gitowl || contributor "Marie Angelique Laporte" + gitowl ++ SubObjectPropertyOf(obo:RO_0009501 obo:RO_0002410) + gitowl || realized in response to SubPropertyOf causally related to + gitowl ++ Declaration(ObjectProperty(obo:RO_0009501)) + gitowl || ObjectProperty: realized in response to + gitowl ++ AnnotationAssertion(obo:IAO_0000112 obo:RO_0009501 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposu + gitowl || IAO_0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response + gitowl ++ ObjectPropertyDomain(obo:RO_0009501 obo:BFO_0000017) + gitowl || realized in response to Domain BFO_0000017 + gitowl ++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0009501 "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environ + gitowl || IAO_0000115 "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is a + gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0009501 "David Osumi-Sutherland") + gitowl || contributor "David Osumi-Sutherland" + gitowl ++ AnnotationAssertion(rdfs:label obo:RO_0009501 "realized in response to"@en) + gitowl || label "realized in response to"@en + gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0009501 "Chris Mungall") + gitowl || contributor "Chris Mungall" + gitowl ++ ObjectPropertyRange(obo:RO_0009501 obo:BFO_0000015) + gitowl || realized in response to Range BFO_0000015 + gitowl ++ AnnotationAssertion(obo:IAO_0000112 obo:RO_0009501 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in + gitowl || IAO_0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is re + gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0009501 "Austin Meier") + gitowl || contributor "Austin Meier" + gitowl || + gitowl || subject: NO_SUBJECT + gitowl ++ SubObjectPropertyOf(ObjectPropertyChain(obo:BFO_0000054 obo:RO_0002404) obo:RO_0009501) + gitowl || BFO_0000054 o causally downstream of SubPropertyOf realized in response to + +commit 8875568e96d5a14d47a6cef8878d2580e9ab3b39 +Author: Chris Mungall +Date: Mon Jun 12 08:36:12 2017 -0700 + + adding conditions to def of exposure stimulus + +commit 9eb002127abab507340d24a6a323ec4ef1a3b596 +Author: James A. Overton +Date: Tue Jun 6 14:54:09 2017 -0400 + + Fix typos in exposure relation definitions + +commit 820c6f1af38063468bdc4d1c45ad4420f1f31de4 +Author: Chris Mungall +Date: Mon Jun 5 11:50:55 2017 -0700 + + Added grouping class for different kinds of exposures, + using as domain for exposure relations. + See: https://github.com/Planteome/plant-environment-ontology/issues/94 + +commit af62b82494e441a6253aa44296c153ac3cc36f36 +Author: Chris Mungall +Date: Mon Jun 5 10:52:54 2017 -0700 + + NRR: 'has exposure stimulus', fixes #172 + gitowl || Diffing: src/ontology/ro-edit.owl + gitowl || + gitowl || subject: http://purl.obolibrary.org/obo/RO_0002241 + gitowl -- SubObjectPropertyOf(obo:RO_0002241 obo:RO_0002244) + gitowl || has exposure stressor SubPropertyOf related via exposure to + gitowl ++ SubObjectPropertyOf(obo:RO_0002241 obo:RO_0002309) + gitowl || has exposure stressor SubPropertyOf has exposure stimulus + gitowl || + gitowl || subject: http://purl.obolibrary.org/obo/RO_0002309 + gitowl ++ SubObjectPropertyOf(obo:RO_0002309 obo:RO_0002244) + gitowl || has exposure stimulus SubPropertyOf related via exposure to + gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0002309 "Chris Mungall") + gitowl || contributor "Chris Mungall" + gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0002309 "Austin Meier") + gitowl || contributor "Austin Meier" + gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0002309 "Marie Angelique Laporte") + gitowl || contributor "Marie Angelique Laporte" + gitowl ++ AnnotationAssertion(rdfs:label obo:RO_0002309 "has exposure stimulus") + gitowl || label "has exposure stimulus" + gitowl ++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002309 "A relationship between an exposure event or process and any agent, stimulus, activity, or event that c + gitowl || IAO_0000115 "A relationship between an exposure event or process and any agent, stimulus, activity, or eve + gitowl ++ AnnotationAssertion(oboInOwl:creation_date obo:RO_0002309 "2017-06-05T17:35:04Z"^^xsd:dateTime) + gitowl || creation_date "2017-06-05T17:35:04Z"^^dateTime + gitowl ++ Declaration(ObjectProperty(obo:RO_0002309)) + gitowl || ObjectProperty: has exposure stimulus + gitowl ++ AnnotationAssertion(oboInOwl:created_by obo:RO_0002309 "cjm"^^xsd:string) + gitowl || created_by "cjm"^^string + * 2017-05-29 Release commit https://github.com/oborel/obo-relations/commit/dd541eb02d08ab6e8a72c2c7fbcbe5db237fe444 diff --git a/ro.obo b/ro.obo index 72a8fa55..eb1826c2 100644 --- a/ro.obo +++ b/ro.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2017-05-29 +data-version: releases/2017-06-15 subsetdef: ro-eco "" subsetdef: RO:0002259 "" remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0] @@ -423,6 +423,19 @@ id: PATO:0002124 name: laminar is_a: PATO:0000141 ! structure +[Term] +id: RO:0002310 +name: exposure event or process +def: "A process occurring within or in the vicinity of an organism that exerts some causal influence on the organism via the interaction between an exposure stimulus and an exposure receptor. The exposure stimulus may be a process, material entity or condition (for example, lack of nutrients). The exposure receptor can be an organism, organism population or a part of an organism." [] +is_a: BFO:0000015 ! process +property_value: http://purl.org/dc/elements/1.1/creator "Chris Mungall" xsd:string +property_value: IAO:0000112 "An exposure event in which a human is exposed to particulate matter in the air. Here the exposure stimulus/stress is the particulate matter, the receptor is the airways and lungs of the human," xsd:string +property_value: IAO:0000112 "An exposure event in which a plant is provided with fertilizer. The exposure receptor is the root system of the plant, the stimulus is the fertilizing chemical, the route is via the soil, possibly mediated by symbotic microbes." xsd:anyURI +property_value: IAO:0000116 "This class is intended as a grouping for various domain and species-specific exposure classes. The ExO class http://purl.obolibrary.org/obo/ExO_0000002 'exposure event' assumes that all exposures involve stressors, which limits the applicability of this class to 'positive' exposures, e.g. exposing a plant to beneficial growing conditions." xsd:string +property_value: seeAlso https://github.com/oborel/obo-relations/pull/173 xsd:anyURI +created_by: cjm +creation_date: 2017-06-05T17:55:39Z + [Term] id: RO:0002532 name: sequentially ordered entity @@ -2089,7 +2102,7 @@ is_a: RO:0002444 ! parasite of [Typedef] id: RO:0002240 name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] property_value: IAO:0000119 ExO:0000001 xsd:string is_a: RO:0002244 ! related via exposure to @@ -2098,7 +2111,7 @@ id: RO:0002241 name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: RO:0002244 ! related via exposure to +is_a: RO:0002309 ! has exposure stimulus [Typedef] id: RO:0002242 @@ -2110,13 +2123,16 @@ is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002243 name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002244 name: related via exposure to -domain: BFO:0000015 ! process +def: "Any relationship between an exposure event or process and any other entity." [] +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 ! exposure event or process is_a: RO:0002410 ! causally related to [Typedef] @@ -2360,6 +2376,17 @@ comment: holds between x and y if and only if x is causally upstream of y and th property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string is_a: RO:0002411 ! causally upstream of +[Typedef] +id: RO:0002309 +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: RO:0002244 ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: RO:0002312 name: evolutionary variant of @@ -4769,6 +4796,22 @@ property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 "Damion Dooley" xsd:string is_a: RO:0009001 ! has substance added +[Typedef] +id: RO:0009501 +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 ! realizable entity +range: BFO:0000015 ! process +holds_over_chain: BFO:0000054 RO:0002404 +is_a: RO:0002410 ! causally related to + [Typedef] id: RO:HOM0000000 name: in similarity relationship with diff --git a/ro.owl b/ro.owl index af4ec76d..02ceac93 100644 --- a/ro.owl +++ b/ro.owl @@ -15,7 +15,7 @@ xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"> - + @@ -2842,7 +2842,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 has exposure receptor @@ -2852,7 +2852,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 has exposure stressor @@ -2875,7 +2875,8 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 has exposure transport path @@ -2885,7 +2886,9 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. related via exposure to @@ -3355,6 +3358,21 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + has exposure stimulus + + + + @@ -7184,6 +7202,29 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + @@ -7496,6 +7537,23 @@ Environments include natural environments or exposures, experimentally applied c + + + + + An exposure event in which a human is exposed to particulate matter in the air. Here the exposure stimulus/stress is the particulate matter, the receptor is the airways and lungs of the human, + An exposure event in which a plant is provided with fertilizer. The exposure receptor is the root system of the plant, the stimulus is the fertilizing chemical, the route is via the soil, possibly mediated by symbotic microbes. + A process occurring within or in the vicinity of an organism that exerts some causal influence on the organism via the interaction between an exposure stimulus and an exposure receptor. The exposure stimulus may be a process, material entity or condition (for example, lack of nutrients). The exposure receptor can be an organism, organism population or a part of an organism. + This class is intended as a grouping for various domain and species-specific exposure classes. The ExO class http://purl.obolibrary.org/obo/ExO_0000002 'exposure event' assumes that all exposures involve stressors, which limits the applicability of this class to 'positive' exposures, e.g. exposing a plant to beneficial growing conditions. + Chris Mungall + cjm + 2017-06-05T17:55:39Z + exposure event or process + https://github.com/oborel/obo-relations/pull/173 + + + + diff --git a/src/ontology/ro.obo b/src/ontology/ro.obo index 72a8fa55..eb1826c2 100644 --- a/src/ontology/ro.obo +++ b/src/ontology/ro.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2017-05-29 +data-version: releases/2017-06-15 subsetdef: ro-eco "" subsetdef: RO:0002259 "" remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0] @@ -423,6 +423,19 @@ id: PATO:0002124 name: laminar is_a: PATO:0000141 ! structure +[Term] +id: RO:0002310 +name: exposure event or process +def: "A process occurring within or in the vicinity of an organism that exerts some causal influence on the organism via the interaction between an exposure stimulus and an exposure receptor. The exposure stimulus may be a process, material entity or condition (for example, lack of nutrients). The exposure receptor can be an organism, organism population or a part of an organism." [] +is_a: BFO:0000015 ! process +property_value: http://purl.org/dc/elements/1.1/creator "Chris Mungall" xsd:string +property_value: IAO:0000112 "An exposure event in which a human is exposed to particulate matter in the air. Here the exposure stimulus/stress is the particulate matter, the receptor is the airways and lungs of the human," xsd:string +property_value: IAO:0000112 "An exposure event in which a plant is provided with fertilizer. The exposure receptor is the root system of the plant, the stimulus is the fertilizing chemical, the route is via the soil, possibly mediated by symbotic microbes." xsd:anyURI +property_value: IAO:0000116 "This class is intended as a grouping for various domain and species-specific exposure classes. The ExO class http://purl.obolibrary.org/obo/ExO_0000002 'exposure event' assumes that all exposures involve stressors, which limits the applicability of this class to 'positive' exposures, e.g. exposing a plant to beneficial growing conditions." xsd:string +property_value: seeAlso https://github.com/oborel/obo-relations/pull/173 xsd:anyURI +created_by: cjm +creation_date: 2017-06-05T17:55:39Z + [Term] id: RO:0002532 name: sequentially ordered entity @@ -2089,7 +2102,7 @@ is_a: RO:0002444 ! parasite of [Typedef] id: RO:0002240 name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] property_value: IAO:0000119 ExO:0000001 xsd:string is_a: RO:0002244 ! related via exposure to @@ -2098,7 +2111,7 @@ id: RO:0002241 name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: RO:0002244 ! related via exposure to +is_a: RO:0002309 ! has exposure stimulus [Typedef] id: RO:0002242 @@ -2110,13 +2123,16 @@ is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002243 name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002244 name: related via exposure to -domain: BFO:0000015 ! process +def: "Any relationship between an exposure event or process and any other entity." [] +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 ! exposure event or process is_a: RO:0002410 ! causally related to [Typedef] @@ -2360,6 +2376,17 @@ comment: holds between x and y if and only if x is causally upstream of y and th property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string is_a: RO:0002411 ! causally upstream of +[Typedef] +id: RO:0002309 +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: RO:0002244 ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: RO:0002312 name: evolutionary variant of @@ -4769,6 +4796,22 @@ property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 "Damion Dooley" xsd:string is_a: RO:0009001 ! has substance added +[Typedef] +id: RO:0009501 +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 ! realizable entity +range: BFO:0000015 ! process +holds_over_chain: BFO:0000054 RO:0002404 +is_a: RO:0002410 ! causally related to + [Typedef] id: RO:HOM0000000 name: in similarity relationship with diff --git a/src/ontology/ro.owl b/src/ontology/ro.owl index af4ec76d..02ceac93 100644 --- a/src/ontology/ro.owl +++ b/src/ontology/ro.owl @@ -15,7 +15,7 @@ xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"> - + @@ -2842,7 +2842,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 has exposure receptor @@ -2852,7 +2852,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 has exposure stressor @@ -2875,7 +2875,8 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 has exposure transport path @@ -2885,7 +2886,9 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. related via exposure to @@ -3355,6 +3358,21 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + has exposure stimulus + + + + @@ -7184,6 +7202,29 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + @@ -7496,6 +7537,23 @@ Environments include natural environments or exposures, experimentally applied c + + + + + An exposure event in which a human is exposed to particulate matter in the air. Here the exposure stimulus/stress is the particulate matter, the receptor is the airways and lungs of the human, + An exposure event in which a plant is provided with fertilizer. The exposure receptor is the root system of the plant, the stimulus is the fertilizing chemical, the route is via the soil, possibly mediated by symbotic microbes. + A process occurring within or in the vicinity of an organism that exerts some causal influence on the organism via the interaction between an exposure stimulus and an exposure receptor. The exposure stimulus may be a process, material entity or condition (for example, lack of nutrients). The exposure receptor can be an organism, organism population or a part of an organism. + This class is intended as a grouping for various domain and species-specific exposure classes. The ExO class http://purl.obolibrary.org/obo/ExO_0000002 'exposure event' assumes that all exposures involve stressors, which limits the applicability of this class to 'positive' exposures, e.g. exposing a plant to beneficial growing conditions. + Chris Mungall + cjm + 2017-06-05T17:55:39Z + exposure event or process + https://github.com/oborel/obo-relations/pull/173 + + + + diff --git a/src/ontology/subsets/ro-causal.obo b/src/ontology/subsets/ro-causal.obo index 515896ac..c2938c8c 100644 --- a/src/ontology/subsets/ro-causal.obo +++ b/src/ontology/subsets/ro-causal.obo @@ -1315,7 +1315,7 @@ is_a: symbiotically_interacts_with ! symbiotically interacts with [Typedef] id: has_exposure_receptor name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] xref: RO:0002240 property_value: IAO:0000119 ExO:0000001 xsd:string is_a: related_via_exposure_to ! related via exposure to @@ -1328,19 +1328,32 @@ xref: RO:0002242 property_value: IAO:0000119 ExO:0000055 xsd:string is_a: related_via_exposure_to ! related via exposure to +[Typedef] +id: has_exposure_stimulus +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +xref: RO:0002309 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: related_via_exposure_to ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: has_exposure_stressor name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] xref: RO:0002241 property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: related_via_exposure_to ! related via exposure to +is_a: has_exposure_stimulus ! has exposure stimulus [Typedef] id: has_exposure_transport_path name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] xref: RO:0002243 +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: related_via_exposure_to ! related via exposure to [Typedef] @@ -2635,6 +2648,22 @@ xref: RO:0002469 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: trophically_interacts_with ! trophically interacts with +[Typedef] +id: realized_in_response_to +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +xref: RO:0009501 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 +range: BFO:0000015 +is_a: causally_related_to ! causally related to + [Typedef] id: receives_input_from name: receives input from @@ -2709,8 +2738,10 @@ property_value: IAO:0000232 "Do not use this relation directly. It is intended a [Typedef] id: related_via_exposure_to name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] xref: RO:0002244 -domain: BFO:0000015 +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 is_a: causally_related_to ! causally related to [Typedef] diff --git a/src/ontology/subsets/ro-causal.owl b/src/ontology/subsets/ro-causal.owl index 8cb7d8b1..556c3cb6 100644 --- a/src/ontology/subsets/ro-causal.owl +++ b/src/ontology/subsets/ro-causal.owl @@ -128,6 +128,12 @@ + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + diff --git a/src/ontology/subsets/ro-chado.obo b/src/ontology/subsets/ro-chado.obo index 6217b927..946eb6ae 100644 --- a/src/ontology/subsets/ro-chado.obo +++ b/src/ontology/subsets/ro-chado.obo @@ -979,14 +979,14 @@ is_a: RO:0002444 ! parasite of [Typedef] id: RO:0002240 name: has_exposure_receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002241 name: has_exposure_stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] -is_a: RO:0002244 ! related via exposure to +is_a: RO:0002309 ! has exposure stimulus [Typedef] id: RO:0002242 @@ -997,12 +997,13 @@ is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002243 name: has_exposure_transport_path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002244 name: related_via_exposure_to +def: "Any relationship between an exposure event or process and any other entity." [] is_a: RO:0002410 ! causally related to [Typedef] @@ -1180,6 +1181,12 @@ id: RO:0002305 name: causally_upstream_of,_negative_effect is_a: RO:0002411 ! causally upstream of +[Typedef] +id: RO:0002309 +name: has_exposure_stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +is_a: RO:0002244 ! related via exposure to + [Typedef] id: RO:0002312 name: evolutionary_variant_of @@ -2868,6 +2875,13 @@ name: has_primary_substance_added def: "'has primary substance added' indicates that an entity has had the given substance added to it in a proportion greater than any other added substance." [] is_a: RO:0009001 ! has substance added +[Typedef] +id: RO:0009501 +name: realized_in_response_to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +holds_over_chain: BFO:0000054 RO:0002404 +is_a: RO:0002410 ! causally related to + [Typedef] id: RO:HOM0000000 name: in_similarity_relationship_with diff --git a/src/ontology/subsets/ro-developmental.obo b/src/ontology/subsets/ro-developmental.obo index 96124ea9..bf58e0cc 100644 --- a/src/ontology/subsets/ro-developmental.obo +++ b/src/ontology/subsets/ro-developmental.obo @@ -1315,7 +1315,7 @@ is_a: symbiotically_interacts_with ! symbiotically interacts with [Typedef] id: has_exposure_receptor name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] xref: RO:0002240 property_value: IAO:0000119 ExO:0000001 xsd:string is_a: related_via_exposure_to ! related via exposure to @@ -1328,19 +1328,32 @@ xref: RO:0002242 property_value: IAO:0000119 ExO:0000055 xsd:string is_a: related_via_exposure_to ! related via exposure to +[Typedef] +id: has_exposure_stimulus +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +xref: RO:0002309 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: related_via_exposure_to ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: has_exposure_stressor name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] xref: RO:0002241 property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: related_via_exposure_to ! related via exposure to +is_a: has_exposure_stimulus ! has exposure stimulus [Typedef] id: has_exposure_transport_path name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] xref: RO:0002243 +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: related_via_exposure_to ! related via exposure to [Typedef] @@ -2635,6 +2648,22 @@ xref: RO:0002469 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: trophically_interacts_with ! trophically interacts with +[Typedef] +id: realized_in_response_to +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +xref: RO:0009501 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 +range: BFO:0000015 +is_a: causally_related_to ! causally related to + [Typedef] id: receives_input_from name: receives input from @@ -2709,8 +2738,10 @@ property_value: IAO:0000232 "Do not use this relation directly. It is intended a [Typedef] id: related_via_exposure_to name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] xref: RO:0002244 -domain: BFO:0000015 +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 is_a: causally_related_to ! causally related to [Typedef] diff --git a/src/ontology/subsets/ro-developmental.owl b/src/ontology/subsets/ro-developmental.owl index dfa23233..8ef7e745 100644 --- a/src/ontology/subsets/ro-developmental.owl +++ b/src/ontology/subsets/ro-developmental.owl @@ -128,6 +128,12 @@ + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + diff --git a/src/ontology/subsets/ro-eco.obo b/src/ontology/subsets/ro-eco.obo index 29ef2dbe..d1c68e82 100644 --- a/src/ontology/subsets/ro-eco.obo +++ b/src/ontology/subsets/ro-eco.obo @@ -1112,7 +1112,7 @@ is_a: RO:0002444 ! parasite of [Typedef] id: RO:0002240 name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] property_value: IAO:0000119 ExO:0000001 xsd:string is_a: RO:0002244 ! related via exposure to @@ -1121,7 +1121,7 @@ id: RO:0002241 name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: RO:0002244 ! related via exposure to +is_a: RO:0002309 ! has exposure stimulus [Typedef] id: RO:0002242 @@ -1133,12 +1133,15 @@ is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002243 name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002244 name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string is_a: RO:0002410 ! causally related to [Typedef] @@ -1369,6 +1372,17 @@ comment: holds between x and y if and only if x is causally upstream of y and th property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string is_a: RO:0002411 ! causally upstream of +[Typedef] +id: RO:0002309 +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: RO:0002244 ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: RO:0002312 name: evolutionary variant of @@ -3687,6 +3701,19 @@ property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 "Damion Dooley" xsd:string is_a: RO:0009001 ! has substance added +[Typedef] +id: RO:0009501 +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +is_a: RO:0002410 ! causally related to + [Typedef] id: results_in_acquisition_of_features_of name: results in acquisition of features of diff --git a/src/ontology/subsets/ro-eco.owl b/src/ontology/subsets/ro-eco.owl index 18fc42ab..d09c6e20 100644 --- a/src/ontology/subsets/ro-eco.owl +++ b/src/ontology/subsets/ro-eco.owl @@ -700,6 +700,12 @@ Where we have an annotation assertion + + + + + + @@ -2635,7 +2641,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 has exposure receptor @@ -2645,7 +2651,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 has exposure stressor @@ -2668,7 +2674,8 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 has exposure transport path @@ -2678,6 +2685,8 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. related via exposure to @@ -3126,6 +3135,21 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + has exposure stimulus + + + + @@ -6808,6 +6832,23 @@ Environments include natural environments or exposures, experimentally applied c + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + diff --git a/src/ontology/subsets/ro-mereotopology.obo b/src/ontology/subsets/ro-mereotopology.obo index bac46403..2f79c88a 100644 --- a/src/ontology/subsets/ro-mereotopology.obo +++ b/src/ontology/subsets/ro-mereotopology.obo @@ -1315,7 +1315,7 @@ is_a: symbiotically_interacts_with ! symbiotically interacts with [Typedef] id: has_exposure_receptor name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] xref: RO:0002240 property_value: IAO:0000119 ExO:0000001 xsd:string is_a: related_via_exposure_to ! related via exposure to @@ -1328,19 +1328,32 @@ xref: RO:0002242 property_value: IAO:0000119 ExO:0000055 xsd:string is_a: related_via_exposure_to ! related via exposure to +[Typedef] +id: has_exposure_stimulus +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +xref: RO:0002309 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: related_via_exposure_to ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: has_exposure_stressor name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] xref: RO:0002241 property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: related_via_exposure_to ! related via exposure to +is_a: has_exposure_stimulus ! has exposure stimulus [Typedef] id: has_exposure_transport_path name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] xref: RO:0002243 +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: related_via_exposure_to ! related via exposure to [Typedef] @@ -2635,6 +2648,22 @@ xref: RO:0002469 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: trophically_interacts_with ! trophically interacts with +[Typedef] +id: realized_in_response_to +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +xref: RO:0009501 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 +range: BFO:0000015 +is_a: causally_related_to ! causally related to + [Typedef] id: receives_input_from name: receives input from @@ -2709,8 +2738,10 @@ property_value: IAO:0000232 "Do not use this relation directly. It is intended a [Typedef] id: related_via_exposure_to name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] xref: RO:0002244 -domain: BFO:0000015 +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 is_a: causally_related_to ! causally related to [Typedef] diff --git a/src/ontology/subsets/ro-mereotopology.owl b/src/ontology/subsets/ro-mereotopology.owl index 240d0c52..6952ef27 100644 --- a/src/ontology/subsets/ro-mereotopology.owl +++ b/src/ontology/subsets/ro-mereotopology.owl @@ -128,6 +128,12 @@ + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + diff --git a/src/ontology/subsets/ro-sequence.obo b/src/ontology/subsets/ro-sequence.obo index 2908ceea..6e918773 100644 --- a/src/ontology/subsets/ro-sequence.obo +++ b/src/ontology/subsets/ro-sequence.obo @@ -1315,7 +1315,7 @@ is_a: symbiotically_interacts_with ! symbiotically interacts with [Typedef] id: has_exposure_receptor name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] xref: RO:0002240 property_value: IAO:0000119 ExO:0000001 xsd:string is_a: related_via_exposure_to ! related via exposure to @@ -1328,19 +1328,32 @@ xref: RO:0002242 property_value: IAO:0000119 ExO:0000055 xsd:string is_a: related_via_exposure_to ! related via exposure to +[Typedef] +id: has_exposure_stimulus +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +xref: RO:0002309 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: related_via_exposure_to ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: has_exposure_stressor name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] xref: RO:0002241 property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: related_via_exposure_to ! related via exposure to +is_a: has_exposure_stimulus ! has exposure stimulus [Typedef] id: has_exposure_transport_path name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] xref: RO:0002243 +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: related_via_exposure_to ! related via exposure to [Typedef] @@ -2635,6 +2648,22 @@ xref: RO:0002469 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: trophically_interacts_with ! trophically interacts with +[Typedef] +id: realized_in_response_to +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +xref: RO:0009501 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 +range: BFO:0000015 +is_a: causally_related_to ! causally related to + [Typedef] id: receives_input_from name: receives input from @@ -2709,8 +2738,10 @@ property_value: IAO:0000232 "Do not use this relation directly. It is intended a [Typedef] id: related_via_exposure_to name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] xref: RO:0002244 -domain: BFO:0000015 +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 is_a: causally_related_to ! causally related to [Typedef] diff --git a/src/ontology/subsets/ro-sequence.owl b/src/ontology/subsets/ro-sequence.owl index 81e79c66..6b1cb2d4 100644 --- a/src/ontology/subsets/ro-sequence.owl +++ b/src/ontology/subsets/ro-sequence.owl @@ -128,6 +128,12 @@ + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + diff --git a/src/ontology/subsets/ro-time-interval.obo b/src/ontology/subsets/ro-time-interval.obo index 83936a63..74ceffc0 100644 --- a/src/ontology/subsets/ro-time-interval.obo +++ b/src/ontology/subsets/ro-time-interval.obo @@ -1315,7 +1315,7 @@ is_a: symbiotically_interacts_with ! symbiotically interacts with [Typedef] id: has_exposure_receptor name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] xref: RO:0002240 property_value: IAO:0000119 ExO:0000001 xsd:string is_a: related_via_exposure_to ! related via exposure to @@ -1328,19 +1328,32 @@ xref: RO:0002242 property_value: IAO:0000119 ExO:0000055 xsd:string is_a: related_via_exposure_to ! related via exposure to +[Typedef] +id: has_exposure_stimulus +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +xref: RO:0002309 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: related_via_exposure_to ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: has_exposure_stressor name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] xref: RO:0002241 property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: related_via_exposure_to ! related via exposure to +is_a: has_exposure_stimulus ! has exposure stimulus [Typedef] id: has_exposure_transport_path name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] xref: RO:0002243 +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: related_via_exposure_to ! related via exposure to [Typedef] @@ -2635,6 +2648,22 @@ xref: RO:0002469 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: trophically_interacts_with ! trophically interacts with +[Typedef] +id: realized_in_response_to +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +xref: RO:0009501 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 +range: BFO:0000015 +is_a: causally_related_to ! causally related to + [Typedef] id: receives_input_from name: receives input from @@ -2709,8 +2738,10 @@ property_value: IAO:0000232 "Do not use this relation directly. It is intended a [Typedef] id: related_via_exposure_to name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] xref: RO:0002244 -domain: BFO:0000015 +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 is_a: causally_related_to ! causally related to [Typedef] diff --git a/src/ontology/subsets/ro-time-interval.owl b/src/ontology/subsets/ro-time-interval.owl index 2ac89f0f..fa58082a 100644 --- a/src/ontology/subsets/ro-time-interval.owl +++ b/src/ontology/subsets/ro-time-interval.owl @@ -128,6 +128,12 @@ + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + diff --git a/subsets/ro-causal.obo b/subsets/ro-causal.obo index 515896ac..c2938c8c 100644 --- a/subsets/ro-causal.obo +++ b/subsets/ro-causal.obo @@ -1315,7 +1315,7 @@ is_a: symbiotically_interacts_with ! symbiotically interacts with [Typedef] id: has_exposure_receptor name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] xref: RO:0002240 property_value: IAO:0000119 ExO:0000001 xsd:string is_a: related_via_exposure_to ! related via exposure to @@ -1328,19 +1328,32 @@ xref: RO:0002242 property_value: IAO:0000119 ExO:0000055 xsd:string is_a: related_via_exposure_to ! related via exposure to +[Typedef] +id: has_exposure_stimulus +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +xref: RO:0002309 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: related_via_exposure_to ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: has_exposure_stressor name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] xref: RO:0002241 property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: related_via_exposure_to ! related via exposure to +is_a: has_exposure_stimulus ! has exposure stimulus [Typedef] id: has_exposure_transport_path name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] xref: RO:0002243 +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: related_via_exposure_to ! related via exposure to [Typedef] @@ -2635,6 +2648,22 @@ xref: RO:0002469 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: trophically_interacts_with ! trophically interacts with +[Typedef] +id: realized_in_response_to +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +xref: RO:0009501 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 +range: BFO:0000015 +is_a: causally_related_to ! causally related to + [Typedef] id: receives_input_from name: receives input from @@ -2709,8 +2738,10 @@ property_value: IAO:0000232 "Do not use this relation directly. It is intended a [Typedef] id: related_via_exposure_to name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] xref: RO:0002244 -domain: BFO:0000015 +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 is_a: causally_related_to ! causally related to [Typedef] diff --git a/subsets/ro-causal.owl b/subsets/ro-causal.owl index 8cb7d8b1..556c3cb6 100644 --- a/subsets/ro-causal.owl +++ b/subsets/ro-causal.owl @@ -128,6 +128,12 @@ + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + diff --git a/subsets/ro-chado.obo b/subsets/ro-chado.obo index 6217b927..946eb6ae 100644 --- a/subsets/ro-chado.obo +++ b/subsets/ro-chado.obo @@ -979,14 +979,14 @@ is_a: RO:0002444 ! parasite of [Typedef] id: RO:0002240 name: has_exposure_receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002241 name: has_exposure_stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] -is_a: RO:0002244 ! related via exposure to +is_a: RO:0002309 ! has exposure stimulus [Typedef] id: RO:0002242 @@ -997,12 +997,13 @@ is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002243 name: has_exposure_transport_path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002244 name: related_via_exposure_to +def: "Any relationship between an exposure event or process and any other entity." [] is_a: RO:0002410 ! causally related to [Typedef] @@ -1180,6 +1181,12 @@ id: RO:0002305 name: causally_upstream_of,_negative_effect is_a: RO:0002411 ! causally upstream of +[Typedef] +id: RO:0002309 +name: has_exposure_stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +is_a: RO:0002244 ! related via exposure to + [Typedef] id: RO:0002312 name: evolutionary_variant_of @@ -2868,6 +2875,13 @@ name: has_primary_substance_added def: "'has primary substance added' indicates that an entity has had the given substance added to it in a proportion greater than any other added substance." [] is_a: RO:0009001 ! has substance added +[Typedef] +id: RO:0009501 +name: realized_in_response_to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +holds_over_chain: BFO:0000054 RO:0002404 +is_a: RO:0002410 ! causally related to + [Typedef] id: RO:HOM0000000 name: in_similarity_relationship_with diff --git a/subsets/ro-developmental.obo b/subsets/ro-developmental.obo index 96124ea9..bf58e0cc 100644 --- a/subsets/ro-developmental.obo +++ b/subsets/ro-developmental.obo @@ -1315,7 +1315,7 @@ is_a: symbiotically_interacts_with ! symbiotically interacts with [Typedef] id: has_exposure_receptor name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] xref: RO:0002240 property_value: IAO:0000119 ExO:0000001 xsd:string is_a: related_via_exposure_to ! related via exposure to @@ -1328,19 +1328,32 @@ xref: RO:0002242 property_value: IAO:0000119 ExO:0000055 xsd:string is_a: related_via_exposure_to ! related via exposure to +[Typedef] +id: has_exposure_stimulus +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +xref: RO:0002309 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: related_via_exposure_to ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: has_exposure_stressor name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] xref: RO:0002241 property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: related_via_exposure_to ! related via exposure to +is_a: has_exposure_stimulus ! has exposure stimulus [Typedef] id: has_exposure_transport_path name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] xref: RO:0002243 +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: related_via_exposure_to ! related via exposure to [Typedef] @@ -2635,6 +2648,22 @@ xref: RO:0002469 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: trophically_interacts_with ! trophically interacts with +[Typedef] +id: realized_in_response_to +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +xref: RO:0009501 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 +range: BFO:0000015 +is_a: causally_related_to ! causally related to + [Typedef] id: receives_input_from name: receives input from @@ -2709,8 +2738,10 @@ property_value: IAO:0000232 "Do not use this relation directly. It is intended a [Typedef] id: related_via_exposure_to name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] xref: RO:0002244 -domain: BFO:0000015 +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 is_a: causally_related_to ! causally related to [Typedef] diff --git a/subsets/ro-developmental.owl b/subsets/ro-developmental.owl index dfa23233..8ef7e745 100644 --- a/subsets/ro-developmental.owl +++ b/subsets/ro-developmental.owl @@ -128,6 +128,12 @@ + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + diff --git a/subsets/ro-eco.obo b/subsets/ro-eco.obo index 29ef2dbe..d1c68e82 100644 --- a/subsets/ro-eco.obo +++ b/subsets/ro-eco.obo @@ -1112,7 +1112,7 @@ is_a: RO:0002444 ! parasite of [Typedef] id: RO:0002240 name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] property_value: IAO:0000119 ExO:0000001 xsd:string is_a: RO:0002244 ! related via exposure to @@ -1121,7 +1121,7 @@ id: RO:0002241 name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: RO:0002244 ! related via exposure to +is_a: RO:0002309 ! has exposure stimulus [Typedef] id: RO:0002242 @@ -1133,12 +1133,15 @@ is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002243 name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: RO:0002244 ! related via exposure to [Typedef] id: RO:0002244 name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string is_a: RO:0002410 ! causally related to [Typedef] @@ -1369,6 +1372,17 @@ comment: holds between x and y if and only if x is causally upstream of y and th property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string is_a: RO:0002411 ! causally upstream of +[Typedef] +id: RO:0002309 +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: RO:0002244 ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: RO:0002312 name: evolutionary variant of @@ -3687,6 +3701,19 @@ property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 "Damion Dooley" xsd:string is_a: RO:0009001 ! has substance added +[Typedef] +id: RO:0009501 +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +is_a: RO:0002410 ! causally related to + [Typedef] id: results_in_acquisition_of_features_of name: results in acquisition of features of diff --git a/subsets/ro-eco.owl b/subsets/ro-eco.owl index 18fc42ab..d09c6e20 100644 --- a/subsets/ro-eco.owl +++ b/subsets/ro-eco.owl @@ -700,6 +700,12 @@ Where we have an annotation assertion + + + + + + @@ -2635,7 +2641,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 has exposure receptor @@ -2645,7 +2651,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 has exposure stressor @@ -2668,7 +2674,8 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 has exposure transport path @@ -2678,6 +2685,8 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. related via exposure to @@ -3126,6 +3135,21 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + has exposure stimulus + + + + @@ -6808,6 +6832,23 @@ Environments include natural environments or exposures, experimentally applied c + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + diff --git a/subsets/ro-mereotopology.obo b/subsets/ro-mereotopology.obo index bac46403..2f79c88a 100644 --- a/subsets/ro-mereotopology.obo +++ b/subsets/ro-mereotopology.obo @@ -1315,7 +1315,7 @@ is_a: symbiotically_interacts_with ! symbiotically interacts with [Typedef] id: has_exposure_receptor name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] xref: RO:0002240 property_value: IAO:0000119 ExO:0000001 xsd:string is_a: related_via_exposure_to ! related via exposure to @@ -1328,19 +1328,32 @@ xref: RO:0002242 property_value: IAO:0000119 ExO:0000055 xsd:string is_a: related_via_exposure_to ! related via exposure to +[Typedef] +id: has_exposure_stimulus +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +xref: RO:0002309 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: related_via_exposure_to ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: has_exposure_stressor name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] xref: RO:0002241 property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: related_via_exposure_to ! related via exposure to +is_a: has_exposure_stimulus ! has exposure stimulus [Typedef] id: has_exposure_transport_path name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] xref: RO:0002243 +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: related_via_exposure_to ! related via exposure to [Typedef] @@ -2635,6 +2648,22 @@ xref: RO:0002469 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: trophically_interacts_with ! trophically interacts with +[Typedef] +id: realized_in_response_to +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +xref: RO:0009501 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 +range: BFO:0000015 +is_a: causally_related_to ! causally related to + [Typedef] id: receives_input_from name: receives input from @@ -2709,8 +2738,10 @@ property_value: IAO:0000232 "Do not use this relation directly. It is intended a [Typedef] id: related_via_exposure_to name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] xref: RO:0002244 -domain: BFO:0000015 +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 is_a: causally_related_to ! causally related to [Typedef] diff --git a/subsets/ro-mereotopology.owl b/subsets/ro-mereotopology.owl index 240d0c52..6952ef27 100644 --- a/subsets/ro-mereotopology.owl +++ b/subsets/ro-mereotopology.owl @@ -128,6 +128,12 @@ + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + diff --git a/subsets/ro-sequence.obo b/subsets/ro-sequence.obo index 2908ceea..6e918773 100644 --- a/subsets/ro-sequence.obo +++ b/subsets/ro-sequence.obo @@ -1315,7 +1315,7 @@ is_a: symbiotically_interacts_with ! symbiotically interacts with [Typedef] id: has_exposure_receptor name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] xref: RO:0002240 property_value: IAO:0000119 ExO:0000001 xsd:string is_a: related_via_exposure_to ! related via exposure to @@ -1328,19 +1328,32 @@ xref: RO:0002242 property_value: IAO:0000119 ExO:0000055 xsd:string is_a: related_via_exposure_to ! related via exposure to +[Typedef] +id: has_exposure_stimulus +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +xref: RO:0002309 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: related_via_exposure_to ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: has_exposure_stressor name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] xref: RO:0002241 property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: related_via_exposure_to ! related via exposure to +is_a: has_exposure_stimulus ! has exposure stimulus [Typedef] id: has_exposure_transport_path name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] xref: RO:0002243 +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: related_via_exposure_to ! related via exposure to [Typedef] @@ -2635,6 +2648,22 @@ xref: RO:0002469 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: trophically_interacts_with ! trophically interacts with +[Typedef] +id: realized_in_response_to +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +xref: RO:0009501 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 +range: BFO:0000015 +is_a: causally_related_to ! causally related to + [Typedef] id: receives_input_from name: receives input from @@ -2709,8 +2738,10 @@ property_value: IAO:0000232 "Do not use this relation directly. It is intended a [Typedef] id: related_via_exposure_to name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] xref: RO:0002244 -domain: BFO:0000015 +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 is_a: causally_related_to ! causally related to [Typedef] diff --git a/subsets/ro-sequence.owl b/subsets/ro-sequence.owl index 81e79c66..6b1cb2d4 100644 --- a/subsets/ro-sequence.owl +++ b/subsets/ro-sequence.owl @@ -128,6 +128,12 @@ + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + diff --git a/subsets/ro-time-interval.obo b/subsets/ro-time-interval.obo index 83936a63..74ceffc0 100644 --- a/subsets/ro-time-interval.obo +++ b/subsets/ro-time-interval.obo @@ -1315,7 +1315,7 @@ is_a: symbiotically_interacts_with ! symbiotically interacts with [Typedef] id: has_exposure_receptor name: has exposure receptor -def: "A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event" [] +def: "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." [] xref: RO:0002240 property_value: IAO:0000119 ExO:0000001 xsd:string is_a: related_via_exposure_to ! related via exposure to @@ -1328,19 +1328,32 @@ xref: RO:0002242 property_value: IAO:0000119 ExO:0000055 xsd:string is_a: related_via_exposure_to ! related via exposure to +[Typedef] +id: has_exposure_stimulus +name: has exposure stimulus +def: "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." [] +xref: RO:0002309 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +is_a: related_via_exposure_to ! related via exposure to +created_by: cjm +creation_date: 2017-06-05T17:35:04Z + [Typedef] id: has_exposure_stressor name: has exposure stressor def: "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." [] xref: RO:0002241 property_value: IAO:0000119 ExO:0000000 xsd:string -is_a: related_via_exposure_to ! related via exposure to +is_a: has_exposure_stimulus ! has exposure stimulus [Typedef] id: has_exposure_transport_path name: has exposure transport path -def: "A broad relationship between an exposure event or process and a the material an agent takes from the source to the target." [] +def: "A broad relationship between an exposure event or process and the course takes from the source to the target." [] xref: RO:0002243 +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ExO_0000004 xsd:anyURI is_a: related_via_exposure_to ! related via exposure to [Typedef] @@ -2635,6 +2648,22 @@ xref: RO:0002469 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: trophically_interacts_with ! trophically interacts with +[Typedef] +id: realized_in_response_to +name: realized in response to +def: "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." [] +xref: RO:0009501 +property_value: http://purl.org/dc/elements/1.1/contributor "Austin Meier" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Marie Angelique Laporte" xsd:string +property_value: IAO:0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." xsd:string +property_value: IAO:0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." xsd:string +property_value: seeAlso https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit xsd:anyURI +domain: BFO:0000017 +range: BFO:0000015 +is_a: causally_related_to ! causally related to + [Typedef] id: receives_input_from name: receives input from @@ -2709,8 +2738,10 @@ property_value: IAO:0000232 "Do not use this relation directly. It is intended a [Typedef] id: related_via_exposure_to name: related via exposure to +def: "Any relationship between an exposure event or process and any other entity." [] xref: RO:0002244 -domain: BFO:0000015 +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes." xsd:string +domain: RO:0002310 is_a: causally_related_to ! causally related to [Typedef] diff --git a/subsets/ro-time-interval.owl b/subsets/ro-time-interval.owl index 2ac89f0f..fa58082a 100644 --- a/subsets/ro-time-interval.owl +++ b/subsets/ro-time-interval.owl @@ -128,6 +128,12 @@ + + + + + + @@ -1558,7 +1564,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and any entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during the exposure event + A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event. ExO:0000001 RO:0002240 has_exposure_receptor @@ -1570,7 +1576,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event. ExO:0000000 RO:0002241 @@ -1597,7 +1603,8 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - A broad relationship between an exposure event or process and a the material an agent takes from the source to the target. + A broad relationship between an exposure event or process and the course takes from the source to the target. + http://purl.obolibrary.org/obo/ExO_0000004 RO:0002243 has_exposure_transport_path has exposure transport path @@ -1609,7 +1616,9 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 - + + Any relationship between an exposure event or process and any other entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving exposure events or processes. RO:0002244 related_via_exposure_to related via exposure to @@ -2016,6 +2025,23 @@ where + + + + + A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event. + Austin Meier + Chris Mungall + Marie Angelique Laporte + cjm + 2017-06-05T17:35:04Z + RO:0002309 + has_exposure_stimulus + has exposure stimulus + + + + @@ -5305,6 +5331,27 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions. + Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph. + r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. + Austin Meier + Chris Mungall + David Osumi-Sutherland + Marie Angelique Laporte + RO:0009501 + realized_in_response_to + realized in response to + https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit + + + + + + + + + @@ -5424,6 +5477,12 @@ Environments include natural environments or exposures, experimentally applied c + + + + + +