From 9e3d993db0a3e189dd48b219184e522f5d3ff4e5 Mon Sep 17 00:00:00 2001 From: Chris Mungall Date: Mon, 24 Oct 2016 08:48:10 -0700 Subject: [PATCH] Adding directional causally upstream of relations, fixes #124 Diff: ``` gitowl gitowl || Diffing: src/ontology/ro-edit.owl gitowl || gitowl || subject: http://purl.obolibrary.org/obo/RO_0002212 gitowl ++ SubObjectPropertyOf(obo:RO_0002212 obo:RO_0002305) gitowl || negatively regulates SubPropertyOf causally upstream of, negative effect gitowl || gitowl || subject: http://purl.obolibrary.org/obo/RO_0002213 gitowl ++ SubObjectPropertyOf(obo:RO_0002213 obo:RO_0002304) gitowl || positively regulates SubPropertyOf causally upstream of, positive effect gitowl || gitowl || subject: http://purl.obolibrary.org/obo/RO_0002304 gitowl ++ Declaration(ObjectProperty(obo:RO_0002304)) gitowl || ObjectProperty: causally upstream of, positive effect gitowl ++ AnnotationAssertion(dc:creator obo:RO_0002304 "cjm"^^xsd:string) gitowl || creator "cjm"^^string gitowl ++ AnnotationAssertion(rdfs:label obo:RO_0002304 "causally upstream of, positive effect") gitowl || label "causally upstream of, positive effect" gitowl ++ SubObjectPropertyOf(obo:RO_0002304 obo:RO_0002411) gitowl || causally upstream of, positive effect SubPropertyOf causally upstream of gitowl ++ AnnotationAssertion(rdfs:comment obo:RO_0002304 "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, gitowl || comment "holds between x and y if and only if x is causally upstream of y and the progression of x increases the fre gitowl || gitowl || subject: http://purl.obolibrary.org/obo/RO_0002305 gitowl ++ AnnotationAssertion(dc:creator obo:RO_0002305 "cjm"^^xsd:string) gitowl || creator "cjm"^^string gitowl ++ SubObjectPropertyOf(obo:RO_0002305 obo:RO_0002411) gitowl || causally upstream of, negative effect SubPropertyOf causally upstream of gitowl ++ AnnotationAssertion(rdfs:comment obo:RO_0002305 "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, gitowl || comment "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the fre gitowl ++ AnnotationAssertion(rdfs:label obo:RO_0002305 "causally upstream of, negative effect") gitowl || label "causally upstream of, negative effect" gitowl ++ Declaration(ObjectProperty(obo:RO_0002305)) gitowl || ObjectProperty: causally upstream of, negative effect gitowl ``` --- src/ontology/ro-edit.owl | 26 +++++++++++++++++++++++++- 1 file changed, 25 insertions(+), 1 deletion(-) diff --git a/src/ontology/ro-edit.owl b/src/ontology/ro-edit.owl index 8c608731..74a9777c 100644 --- a/src/ontology/ro-edit.owl +++ b/src/ontology/ro-edit.owl @@ -2336,6 +2336,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + @@ -2355,6 +2356,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + @@ -3222,6 +3224,28 @@ where + + + + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y + causally upstream of, positive effect + + + + + + + + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y + causally upstream of, negative effect + + + + @@ -7469,8 +7493,8 @@ Environments include natural environments or exposures, experimentally applied c Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. - https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 Chris Mungall + https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1