From cc6724ea7d5c3218065fda35a0281d460eef460f Mon Sep 17 00:00:00 2001 From: Anita Caron Date: Wed, 7 Sep 2022 09:47:12 +0100 Subject: [PATCH] release --- ro-base.json | 193 ++++++++------- ro-base.obo | 6 +- ro-base.owl | 11 +- ro.json | 377 +++++++++++++++--------------- ro.obo | 5 +- ro.owl | 10 +- src/ontology/subsets/ro-chado.obo | 2 +- subsets/ro-chado.obo | 2 +- 8 files changed, 287 insertions(+), 319 deletions(-) diff --git a/ro-base.json b/ro-base.json index 57840400..517c1a57 100644 --- a/ro-base.json +++ b/ro-base.json @@ -13715,14 +13715,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002002", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002083", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002081" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0011013", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0011004" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002083", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002081" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004007", "pred" : "subPropertyOf", @@ -13751,14 +13751,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002009", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002292" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002110", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002113" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002103", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002120" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002110", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002113" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002567", "pred" : "subPropertyOf", @@ -13859,14 +13859,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004047", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002016", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002017" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004005", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004000" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002016", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002017" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002411", "pred" : "subPropertyOf", @@ -14019,14 +14019,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004028", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002410" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002381", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002488", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002490" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002381", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0001023", "pred" : "subPropertyOf", @@ -14207,14 +14207,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002291", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002206" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002225", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002202" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002223", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002225", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002202" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002492", "pred" : "subPropertyOf", @@ -14315,14 +14315,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0012006", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0012004" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000022", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000011" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002230", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000022", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000011" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002590", "pred" : "subPropertyOf", @@ -14359,14 +14359,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002339", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002344" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002012", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002418" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002012", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002418" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002209", "pred" : "subPropertyOf", @@ -14527,6 +14527,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002315", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0040036" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002455", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002442" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002252", "pred" : "subPropertyOf", @@ -14535,22 +14539,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002466", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002465" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002455", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002442" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002263", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000007", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000001" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002310", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000007", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000001" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0011014", "pred" : "subPropertyOf", @@ -15247,14 +15247,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002245", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002206" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002231", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002479" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002180", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002231", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002479" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0013005", "pred" : "subPropertyOf", @@ -15268,17 +15268,17 @@ "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002091" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002007", + "sub" : "http://purl.obolibrary.org/obo/RO_0004024", "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" + "obj" : "http://purl.obolibrary.org/obo/RO_0004023" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004012", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004010" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0004024", + "sub" : "http://purl.obolibrary.org/obo/RO_0002007", "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0004023" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002525", "pred" : "subPropertyOf", @@ -15311,10 +15311,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000062", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000007" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002085", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002092" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002084", "pred" : "inverseOf", @@ -15323,6 +15319,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002087", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002090" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002085", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002092" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0011004", "pred" : "subPropertyOf", @@ -15575,14 +15575,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002203", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002286" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0004034", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002263" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002588", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002297" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004034", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002263" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002219", "pred" : "inverseOf", @@ -15799,14 +15799,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0000079", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000085" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002159", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002320" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002090", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002159", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002320" }, { "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000045", "pred" : "subPropertyOf", @@ -16131,14 +16131,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0013003", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0013001" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002286", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002026", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002323" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002286", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", "pred" : "inverseOf", @@ -16175,14 +16175,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002355", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0040036" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002256", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004015", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004010" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002256", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "inverseOf", @@ -16519,10 +16519,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002462", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002461" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002297", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002295" }, { "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000065", "pred" : "subPropertyOf", @@ -16531,6 +16527,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000060", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000050" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002297", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002295" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002331", "pred" : "subPropertyOf", @@ -16727,14 +16727,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002229", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0013002", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002110" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002020", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002313" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0013002", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002110" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002086", "pred" : "subPropertyOf", @@ -16796,7 +16796,7 @@ "pred" : "http://xmlns.com/foaf/0.1/homepage", "val" : " https://github.com/oborel/obo-relations/" } ], - "version" : "http://purl.obolibrary.org/obo/ro/releases/2022-07-19/ro-base.owl" + "version" : "http://purl.obolibrary.org/obo/ro/releases/2022-09-07/ro-base.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], @@ -16853,13 +16853,6 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002332", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002179", - "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", - "pred" : "http://purl.obolibrary.org/obo/RO_0002179", - "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" - } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0009004", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], @@ -16898,17 +16891,9 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -16918,13 +16903,21 @@ "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", @@ -17067,13 +17060,13 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_HOM0000000", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", - "pred" : "http://purl.obolibrary.org/obo/RO_HOM0000000", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" - }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", "pred" : "http://purl.obolibrary.org/obo/RO_HOM0000000", "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", + "pred" : "http://purl.obolibrary.org/obo/RO_HOM0000000", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002414", @@ -17403,13 +17396,13 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002214", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", - "pred" : "http://purl.obolibrary.org/obo/RO_0002214", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" - }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/RO_0002214", "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", + "pred" : "http://purl.obolibrary.org/obo/RO_0002214", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002215", diff --git a/ro-base.obo b/ro-base.obo index d0dd25bb..96d3c1ce 100644 --- a/ro-base.obo +++ b/ro-base.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: ro/releases/2022-07-19/ro-base.owl +data-version: ro/releases/2022-09-07/ro-base.owl subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology "" @@ -117,10 +117,6 @@ id: BFO:0000141 name: immaterial entity is_a: BFO:0000004 ! independent continuant -[Term] -id: CARO:0000006 -relationship: RO:0002179 CARO:0000003 ! drains - [Term] id: CHEBI:50906 is_a: PATO:0000001 diff --git a/ro-base.owl b/ro-base.owl index 47c9729a..21494b43 100644 --- a/ro-base.owl +++ b/ro-base.owl @@ -18,7 +18,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies. OBO Relations Ontology @@ -12189,14 +12189,7 @@ For example, protein A (transcription factor) indirectly increases by expression - - - - - - - - + diff --git a/ro.json b/ro.json index eb78d7b1..5e5d05bb 100644 --- a/ro.json +++ b/ro.json @@ -14178,14 +14178,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002505", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002578", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002211" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002555", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002574" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002578", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002211" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002375", "pred" : "subPropertyOf", @@ -14198,22 +14198,22 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002436", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002434" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002614", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002616" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002615", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0003301" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016301", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0016772" + "sub" : "http://purl.obolibrary.org/obo/RO_0002614", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002616" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0015001", "pred" : "subPropertyOf", "obj" : "http://www.w3.org/2002/07/owl#topObjectProperty" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016301", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0016772" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0008504", "pred" : "subPropertyOf", @@ -14230,14 +14230,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002002", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002083", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002081" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0011013", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0011004" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002083", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002081" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004007", "pred" : "subPropertyOf", @@ -14266,14 +14266,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002009", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002292" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002110", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002113" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002103", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002120" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002110", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002113" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002567", "pred" : "subPropertyOf", @@ -14338,14 +14338,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002572", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002571" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002521", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002514" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002520", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002524" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002521", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002514" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002571", "pred" : "subPropertyOf", @@ -14378,14 +14378,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004047", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002411", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002418" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004005", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004000" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002411", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002418" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002016", "pred" : "subPropertyOf", @@ -14550,14 +14550,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004028", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002410" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002488", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002490" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002381", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002488", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002490" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0001023", "pred" : "subPropertyOf", @@ -14582,14 +14582,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004020", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004019" - }, { - "sub" : "http://purl.obolibrary.org/obo/CARO_0000003", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/CARO_0000006" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0016004", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002244" + }, { + "sub" : "http://purl.obolibrary.org/obo/CARO_0000003", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000006" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002507", "pred" : "inverseOf", @@ -14878,14 +14878,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0012006", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0012004" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002230", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000022", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000011" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002230", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002590", "pred" : "subPropertyOf", @@ -14930,14 +14930,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002339", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002344" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002012", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002209", "pred" : "subPropertyOf", @@ -15071,17 +15071,17 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002131" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0030425", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0043005" + "sub" : "http://purl.obolibrary.org/obo/RO_0008502", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002440" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001199", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0008502", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002440" + "sub" : "http://purl.obolibrary.org/obo/GO_0030425", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043005" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002478", "pred" : "subPropertyOf", @@ -15110,14 +15110,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002599", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002597" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0044456", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002130", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002131" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044456", + "pred" : "is_a", + "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", @@ -15131,29 +15131,29 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0040036" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002455", + "sub" : "http://purl.obolibrary.org/obo/RO_0002252", "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002442" + "obj" : "http://purl.obolibrary.org/obo/RO_0002375" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002466", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002465" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002252", + "sub" : "http://purl.obolibrary.org/obo/RO_0002455", "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002375" + "obj" : "http://purl.obolibrary.org/obo/RO_0002442" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002263", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002310", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" }, { "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000007", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000001" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002310", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0011014", "pred" : "subPropertyOf", @@ -15314,10 +15314,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002430", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002428" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002379", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002131" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002113", "pred" : "subPropertyOf", @@ -15326,6 +15322,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002114", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002120" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002379", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002131" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002329", "pred" : "subPropertyOf", @@ -15378,14 +15378,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002006", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002131" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000062", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000065" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002618", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002619" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000062", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000065" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002600", "pred" : "subPropertyOf", @@ -15466,14 +15466,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002533", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/RO_0002532" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002022", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002334" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002260", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000087" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002022", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002334" }, { "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000012", "pred" : "subPropertyOf", @@ -15614,14 +15614,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002386", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002384" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002305", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0004046" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002258", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002286" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002305", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0004046" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000402", "pred" : "is_a", @@ -15734,14 +15734,14 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000062", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002086" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002372", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002567" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004001", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004011" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002372", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002567" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002512", "pred" : "subPropertyOf", @@ -15770,14 +15770,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002229", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0042734", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0044456" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004002", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004012" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042734", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044456" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002384", "pred" : "subPropertyOf", @@ -15886,34 +15886,34 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002526", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002514" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002009", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002160", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002162" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002009", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002261", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000087" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002245", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002206" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004006", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004016" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002180", + "sub" : "http://purl.obolibrary.org/obo/RO_0002245", "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" + "obj" : "http://purl.obolibrary.org/obo/RO_0002206" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002231", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002479" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002180", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0013005", "pred" : "subPropertyOf", @@ -15926,6 +15926,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002088", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002091" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002007", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004012", "pred" : "subPropertyOf", @@ -15934,10 +15938,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004024", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004023" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002007", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002525", "pred" : "subPropertyOf", @@ -16002,26 +16002,26 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002004", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002458", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002438" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002476", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002258" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002458", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002438" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002233", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0001020", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0001022" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002006", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002130" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0001020", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0001022" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002622", "pred" : "inverseOf", @@ -16050,14 +16050,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002000", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002002" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002216", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002500" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002495", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002494" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002216", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002500" }, { "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000044", "pred" : "subPropertyOf", @@ -16086,14 +16086,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004009", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004007" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002473", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002624", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002625" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002473", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002340", "pred" : "subPropertyOf", @@ -16178,14 +16178,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004023", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0040035" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0000080", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0000086" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0008501", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0008502" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000080", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000086" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0013008", "pred" : "inverseOf", @@ -16390,14 +16390,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002445", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002443" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002309", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002244" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002529", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002529" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002309", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002244" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002360", "pred" : "subPropertyOf", @@ -16410,14 +16410,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002444", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002454" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002246", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002206" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002461", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000056" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002246", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002206" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002232", "pred" : "subPropertyOf", @@ -16482,6 +16482,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002624", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002618" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000079", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000085" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002159", "pred" : "subPropertyOf", @@ -16490,10 +16494,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002090", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000063" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0000079", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0000085" }, { "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000045", "pred" : "subPropertyOf", @@ -16706,26 +16706,26 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002459", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002574" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0003305", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0003304" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002177", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002323" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0003305", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0003304" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002551", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002576" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002381", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002375" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000054", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000055" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002381", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002375" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0008505", "pred" : "subPropertyOf", @@ -16818,14 +16818,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002380", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002569" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002331", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002431" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002256", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002257" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002331", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002431" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0013003", "pred" : "subPropertyOf", @@ -17002,14 +17002,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002607", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002610" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0004022", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002200" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002559", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002566" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004022", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002200" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002204", "pred" : "subPropertyOf", @@ -17246,14 +17246,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002297", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002295" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000060", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000065", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000000" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_HOM0000060", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_HOM0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002331", "pred" : "subPropertyOf", @@ -17278,14 +17278,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002641", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002635" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002326", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002329" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002091", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002326", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002329" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002512", "pred" : "inverseOf", @@ -17342,14 +17342,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004002", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004000" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002223", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004009", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002233" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002223", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002252", "pred" : "subPropertyOf", @@ -17434,14 +17434,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002205", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002330" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0004000", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002410" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002204", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002205" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004000", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002410" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002569", "pred" : "subPropertyOf", @@ -17466,14 +17466,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002229", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002020", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002313" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0013002", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002110" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002020", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002313" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002086", "pred" : "subPropertyOf", @@ -17551,12 +17551,12 @@ "val" : "Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 146 Logical Axioms: 45]" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2022-07-19" + "val" : "2022-09-07" }, { "pred" : "http://xmlns.com/foaf/0.1/homepage", "val" : " https://github.com/oborel/obo-relations/" } ], - "version" : "http://purl.obolibrary.org/obo/ro/releases/2022-07-19/ro.owl" + "version" : "http://purl.obolibrary.org/obo/ro/releases/2022-09-07/ro.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], @@ -17613,13 +17613,6 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002332", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002179", - "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", - "pred" : "http://purl.obolibrary.org/obo/RO_0002179", - "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" - } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0009004", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], @@ -17669,33 +17662,33 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", @@ -17838,13 +17831,13 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_HOM0000000", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", - "pred" : "http://purl.obolibrary.org/obo/RO_HOM0000000", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" - }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/RO_HOM0000000", "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "pred" : "http://purl.obolibrary.org/obo/RO_HOM0000000", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002414", diff --git a/ro.obo b/ro.obo index 51d5ef8e..2a084f4c 100644 --- a/ro.obo +++ b/ro.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2022-07-19 +data-version: releases/2022-09-07 subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology "" @@ -26,7 +26,7 @@ property_value: http://purl.org/dc/elements/1.1/description "The OBO Relations O property_value: http://purl.org/dc/elements/1.1/title "OBO Relations Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ property_value: http://xmlns.com/foaf/0.1/homepage " https://github.com/oborel/obo-relations/" xsd:anyURI -property_value: owl:versionInfo "2022-07-19" xsd:string +property_value: owl:versionInfo "2022-09-07" xsd:string owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(DataProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\n############################\n# Annotation Properties\n############################\n\n# Annotation Property: (first order logic expression)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (temporal interpretation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (never in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (mutually spatially disjoint with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (taxonomic class assertion)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (ambiguous for taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (dubious for taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (present in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (annotation property cardinality)\n\nSubAnnotationPropertyOf( )\nAnnotationPropertyRange( xsd:nonNegativeInteger)\n\n# Annotation Property: (logical macro assertion on a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on a property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an object property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an annotation property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (dispositional interpretation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has no connections with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (curator guidance link)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (always present in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (temporal logical macro assertion on a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (measurement property has unit)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has start time value)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has end time value)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, days post fertilization)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, days post fertilization)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, years post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, years post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, months post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, months post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (month of gestation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has developmental stage marker)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, days post coitum)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, days post coitum)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, weeks post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, weeks post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is asymmetric relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is symmetric relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is direct form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is indirect form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is a defining property chain axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is a defining property chain axiom where second argument is reflexive)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is relational form of a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion involving identity)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (in approximate one to one relationship with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is approximately equivalent to)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is opposite of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is indistinguishable from)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (evidential logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (axiom has evidence)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (axiom contradicted by evidence)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is representative IRI for equivalence set)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (nominally disjoint with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is directional form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is positive form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is negative form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is homeomorphic for)\n\nSubAnnotationPropertyOf( )\n\n\n############################\n# Object Properties\n############################\n\n# Object Property: (located in)\n\nObjectPropertyRange( ObjectIntersectionOf( ObjectComplementOf()))\n\n# Object Property: (coincident with)\n\nObjectPropertyRange( ObjectIntersectionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (synapsed by)\n\nObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (has fasciculating neuron projection)\n\nObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (connected to)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (connects)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (gene product of)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (directly develops from)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (has member)\n\nIrreflexiveObjectProperty()\n\n# Object Property: (anabranch of)\n\nSubObjectPropertyOf( ObjectInverseOf())\n\n# Object Property: (branching part of)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (differs in attribute of)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (transcribed from)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (ribosomal translation of)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (ribosomally translates to)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (has skeleton)\n\nIrreflexiveObjectProperty()\n\n# Object Property: (has role in modeling)\n\nIrreflexiveObjectProperty()\n\n# Object Property: (condition has genetic basis in)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (disease has basis in feature)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (disease has location)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (disease has inflammation site)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (disease has feature)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (has substance added)\n\nIrreflexiveObjectProperty()\n\n# Object Property: (has substance removed)\n\nIrreflexiveObjectProperty()\n\n# Object Property: (immersed in)\n\nIrreflexiveObjectProperty()\n\n# Object Property: (has primary substance added)\n\nIrreflexiveObjectProperty()\n\n\n############################\n# Data Properties\n############################\n\n# Data Property: (has increased age-specific mortality rate)\n\nDataPropertyRange( DatatypeRestriction(xsd:short xsd:minInclusive \"0\"^^xsd:short xsd:maxInclusive \"100\"^^xsd:short))\n\n\n\n############################\n# Classes\n############################\n\n# Class: (continuant)\n\nSubClassOf( owl:Thing)\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (occurrent)\n\nSubClassOf( owl:Thing)\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (material entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (immaterial entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: ()\n\nSubClassOf( owl:Thing)\n\n# Class: (ubiquitin-protein ligase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: ()\n\nSubClassOf( owl:Thing)\n\n# Class: (nucleus)\n\nSubClassOf( owl:Thing)\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: ()\n\nSubClassOf( owl:Thing)\nSubClassOf( ObjectHasSelf())\n\n# Class: (cell projection)\n\nSubClassOf( owl:Thing)\n\n# Class: (synapse part)\n\nSubClassOf( owl:Thing)\n\n# Class: (sequentially ordered entity)\n\nSubClassOf( owl:Thing)\n\n# Class: owl:Nothing (owl:Nothing)\n\nSubClassOf(owl:Nothing owl:Nothing)\n\n# Class: ()\n\nSubClassOf( owl:Thing)\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.\") Annotation(rdfs:label \"inferring direct reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct neg reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct positive reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"effector input is compound function input\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"Input of effector is input of its parent MF\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly regulates X, its parent MF directly regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly positively regulates X, its parent MF directly positively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"if effector directly negatively regulates X, its parent MF directly negatively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nAnnotationAssertion(rdfs:comment \"\")\n) [Term] @@ -141,7 +141,6 @@ id: CARO:0000006 name: material anatomical entity is_a: BFO:0000040 ! material entity is_a: CARO:0000000 ! anatomical entity -relationship: RO:0002179 CARO:0000003 ! drains connected anatomical structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl [Term] diff --git a/ro.owl b/ro.owl index b60de390..a3db7bcc 100644 --- a/ro.owl +++ b/ro.owl @@ -18,7 +18,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -35,7 +35,7 @@ The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies. OBO Relations Ontology - 2022-07-19 + 2022-09-07 https://github.com/oborel/obo-relations/ @@ -9701,12 +9701,6 @@ For example, protein A (transcription factor) indirectly increases by expression - - - - - - diff --git a/src/ontology/subsets/ro-chado.obo b/src/ontology/subsets/ro-chado.obo index e57923c9..2f7ad1fc 100644 --- a/src/ontology/subsets/ro-chado.obo +++ b/src/ontology/subsets/ro-chado.obo @@ -26,7 +26,7 @@ property_value: http://purl.org/dc/elements/1.1/description "The OBO Relations O property_value: http://purl.org/dc/elements/1.1/title "OBO Relations Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ property_value: http://xmlns.com/foaf/0.1/homepage " https://github.com/oborel/obo-relations/" xsd:anyURI -property_value: owl:versionInfo "2022-07-19" xsd:string +property_value: owl:versionInfo "2022-09-07" xsd:string [Typedef] id: BFO:0000050 diff --git a/subsets/ro-chado.obo b/subsets/ro-chado.obo index e57923c9..2f7ad1fc 100644 --- a/subsets/ro-chado.obo +++ b/subsets/ro-chado.obo @@ -26,7 +26,7 @@ property_value: http://purl.org/dc/elements/1.1/description "The OBO Relations O property_value: http://purl.org/dc/elements/1.1/title "OBO Relations Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ property_value: http://xmlns.com/foaf/0.1/homepage " https://github.com/oborel/obo-relations/" xsd:anyURI -property_value: owl:versionInfo "2022-07-19" xsd:string +property_value: owl:versionInfo "2022-09-07" xsd:string [Typedef] id: BFO:0000050