diff --git a/src/ontology/role-edit.owl b/src/ontology/role-edit.owl new file mode 100644 index 00000000..2649b38b --- /dev/null +++ b/src/ontology/role-edit.owl @@ -0,0 +1,274 @@ +Prefix(:=) +Prefix(dc:=) +Prefix(obo:=) +Prefix(owl:=) +Prefix(rdf:=) +Prefix(xml:=) +Prefix(xsd:=) +Prefix(cito:=) +Prefix(foaf:=) +Prefix(rdfs:=) +Prefix(swrl:=) +Prefix(swrla:=) +Prefix(swrlb:=) +Prefix(subsets:=) +Prefix(oboInOwl:=) + + +Ontology( + +Import() +Annotation(dc:description "ROle ontology."@en) + +Declaration(Class(obo:RO_0040001)) +Declaration(Class(obo:RO_0040002)) +Declaration(Class(obo:RO_0040003)) +Declaration(Class(obo:RO_0040004)) +Declaration(Class(obo:RO_0040005)) +Declaration(Class(obo:RO_0040006)) +Declaration(Class(obo:RO_0040007)) +Declaration(Class(obo:RO_0040008)) +Declaration(Class(obo:RO_0040009)) +Declaration(Class(obo:RO_0040010)) +Declaration(Class(obo:RO_0040011)) +Declaration(Class(obo:RO_0040012)) +Declaration(Class(obo:RO_0040013)) +Declaration(Class(obo:RO_0040014)) +Declaration(Class(obo:RO_0040015)) +Declaration(Class(obo:RO_0040016)) +Declaration(Class(obo:RO_0040017)) +Declaration(Class(obo:RO_0040018)) +Declaration(Class(obo:RO_0040019)) +Declaration(Class(obo:RO_0040020)) +Declaration(Class(obo:RO_0040021)) +Declaration(Class(obo:RO_0040022)) +Declaration(Class(obo:RO_0040023)) +Declaration(Class(obo:RO_0040024)) +Declaration(Class(obo:RO_0040025)) +Declaration(Class(obo:RO_0040026)) +Declaration(Class(obo:RO_0040027)) +Declaration(Class(obo:RO_0040032)) +Declaration(Class(obo:RO_0040033)) + + + +############################ +# Classes +############################ + +# Class: obo:RO_0040001 (participant disposition) + +AnnotationAssertion(obo:IAO_0000115 obo:RO_0040001 "A disposition played by a participant in a process.") +AnnotationAssertion(oboInOwl:created_by obo:RO_0040001 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040001 "2018-07-07T23:00:17Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040001 "participant disposition") +SubClassOf(obo:RO_0040001 obo:BFO_0000016) + +# Class: obo:RO_0040002 (primary agent function) + +AnnotationAssertion(obo:IAO_0000115 obo:RO_0040002 "A disposition played by a participant that acts to achieve the objectives of the directed process.") +AnnotationAssertion(oboInOwl:created_by obo:RO_0040002 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040002 "2018-07-07T23:00:24Z"^^xsd:dateTime) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:RO_0040002 "agent function") +AnnotationAssertion(rdfs:label obo:RO_0040002 "primary agent function") +EquivalentClasses(obo:RO_0040002 ObjectIntersectionOf(obo:BFO_0000034 obo:RO_0040013)) +SubClassOf(obo:RO_0040002 obo:RO_0040013) + +# Class: obo:RO_0040003 (input role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040003 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040003 "2018-07-07T23:00:38Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040003 "input role") +SubClassOf(obo:RO_0040003 obo:RO_0040021) +DisjointUnion(obo:RO_0040003 obo:RO_0040006 obo:RO_0040007) + +# Class: obo:RO_0040004 (output role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040004 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040004 "2018-07-07T23:00:45Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040004 "output role") +SubClassOf(obo:RO_0040004 obo:RO_0040021) + +# Class: obo:RO_0040005 (catalyst function) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040005 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040005 "2018-07-07T23:01:46Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040005 "catalyst function") +SubClassOf(obo:RO_0040005 obo:RO_0040002) + +# Class: obo:RO_0040006 (targeted input role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040006 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040006 "2018-07-07T23:03:01Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040006 "targeted input role") +EquivalentClasses(obo:RO_0040006 ObjectIntersectionOf(obo:RO_0040003 obo:RO_0040020)) + +# Class: obo:RO_0040007 (non-targeted input role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040007 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040007 "2018-07-07T23:03:22Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040007 "non-targeted input role") +SubClassOf(obo:RO_0040007 obo:RO_0040003) + +# Class: obo:RO_0040008 (substrate role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040008 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040008 "2018-07-07T23:04:11Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040008 "substrate role") +SubClassOf(obo:RO_0040008 obo:RO_0040006) + +# Class: obo:RO_0040009 (transportee role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040009 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040009 "2018-07-07T23:05:01Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040009 "transportee role") +SubClassOf(obo:RO_0040009 obo:RO_0040006) + +# Class: obo:RO_0040010 (transporter function) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040010 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040010 "2018-07-07T23:05:10Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040010 "transporter function") +SubClassOf(obo:RO_0040010 obo:RO_0040002) + +# Class: obo:RO_0040011 (modified input role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040011 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040011 "2018-07-07T23:06:59Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040011 "modified input role") +SubClassOf(obo:RO_0040011 obo:RO_0040006) + +# Class: obo:RO_0040012 (disassembled disposition) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040012 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040012 "2018-07-07T23:07:25Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040012 "disassembled disposition") +SubClassOf(obo:RO_0040012 obo:RO_0040011) + +# Class: obo:RO_0040013 (directed process participant disposition) + +AnnotationAssertion(obo:IAO_0000115 obo:RO_0040013 "A disposition played in a process that is a realization of a function, or a causally connected set of function realizations.") +AnnotationAssertion(oboInOwl:created_by obo:RO_0040013 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040013 "2018-07-07T23:08:02Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040013 "directed process participant disposition") +EquivalentClasses(obo:RO_0040013 ObjectSomeValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:BFO_0000055 obo:BFO_0000034)))) +SubClassOf(obo:RO_0040013 obo:RO_0040001) +DisjointUnion(obo:RO_0040013 obo:RO_0040002 obo:RO_0040003 obo:RO_0040004) + +# Class: obo:RO_0040014 (product role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040014 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040014 "2018-07-07T23:10:08Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040014 "product role") +SubClassOf(obo:RO_0040014 obo:RO_0040022) + +# Class: obo:RO_0040015 (cofactor role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040015 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040015 "2018-07-07T23:12:34Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040015 "cofactor role") +SubClassOf(obo:RO_0040015 obo:RO_0040026) + +# Class: obo:RO_0040016 (consumed disposition) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040016 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040016 "2018-07-07T23:16:16Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040016 "consumed disposition") +SubClassOf(obo:RO_0040016 obo:RO_0040011) + +# Class: obo:RO_0040017 (barrier function) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040017 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040017 "2018-07-07T23:17:15Z"^^xsd:dateTime) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:RO_0040017 "A function that is realized by influencing the flow of movement of a material entity, either directly through physical blocking or indirectly through fields, etc.") +AnnotationAssertion(rdfs:label obo:RO_0040017 "barrier function") +SubClassOf(obo:RO_0040017 obo:RO_0040002) + +# Class: obo:RO_0040018 (intermediate output disposition) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040018 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040018 "2018-07-07T23:18:11Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040018 "intermediate output disposition") +SubClassOf(obo:RO_0040018 obo:RO_0040023) + +# Class: obo:RO_0040019 (byproduct disposition) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040019 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040019 "2018-07-07T23:18:18Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040019 "byproduct disposition") +SubClassOf(obo:RO_0040019 obo:RO_0040023) + +# Class: obo:RO_0040020 (targeted input or output role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040020 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040020 "2018-07-07T23:19:19Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040020 "targeted input or output role") +SubClassOf(obo:RO_0040020 obo:RO_0040021) + +# Class: obo:RO_0040021 (input or output role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040021 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040021 "2018-07-07T23:19:56Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040021 "input or output role") +SubClassOf(obo:RO_0040021 obo:BFO_0000023) +SubClassOf(obo:RO_0040021 obo:RO_0040013) +DisjointUnion(obo:RO_0040021 obo:RO_0040003 obo:RO_0040004) + +# Class: obo:RO_0040022 (targeted output role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040022 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040022 "2018-07-07T23:21:13Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040022 "targeted output role") +EquivalentClasses(obo:RO_0040022 ObjectIntersectionOf(obo:RO_0040004 obo:RO_0040020)) + +# Class: obo:RO_0040023 (non-targeted output disposition) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040023 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040023 "2018-07-07T23:22:45Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040023 "non-targeted output disposition") +SubClassOf(obo:RO_0040023 obo:RO_0040004) + +# Class: obo:RO_0040024 (regulator function) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040024 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040024 "2018-07-07T23:24:08Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040024 "regulator function") +SubClassOf(obo:RO_0040024 obo:RO_0040002) + +# Class: obo:RO_0040025 (binding function) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040025 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040025 "2018-07-07T23:26:26Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040025 "binding function") +SubClassOf(obo:RO_0040025 obo:RO_0040002) + +# Class: obo:RO_0040026 (helper input role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040026 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040026 "2018-07-07T23:28:32Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040026 "helper input role") +SubClassOf(obo:RO_0040026 obo:RO_0040007) + +# Class: obo:RO_0040027 (consumed reactant disposition) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040027 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040027 "2018-07-07T23:36:14Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040027 "consumed reactant disposition") +SubClassOf(obo:RO_0040027 obo:RO_0040016) + +# Class: obo:RO_0040032 (maintenance of state) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040032 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040032 "2018-07-25T20:40:21Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040032 "maintenance of state") +SubClassOf(obo:RO_0040032 obo:BFO_0000016) + +# Class: obo:RO_0040033 (maintenance of shape) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040033 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040033 "2018-07-25T20:40:52Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040033 "maintenance of shape") +SubClassOf(obo:RO_0040033 obo:RO_0040032) + + +) \ No newline at end of file