From 98abd974b5f1026bf5e8f46080cfe3b0725c9f73 Mon Sep 17 00:00:00 2001 From: cmungall Date: Mon, 22 Oct 2018 19:56:23 -0700 Subject: [PATCH 1/2] Added first pass at #277 --- src/ontology/role-edit.owl | 270 +++++++++++++++++++++++++++++++++++++ 1 file changed, 270 insertions(+) create mode 100644 src/ontology/role-edit.owl diff --git a/src/ontology/role-edit.owl b/src/ontology/role-edit.owl new file mode 100644 index 00000000..720dabfe --- /dev/null +++ b/src/ontology/role-edit.owl @@ -0,0 +1,270 @@ +Prefix(:=) +Prefix(dc:=) +Prefix(obo:=) +Prefix(owl:=) +Prefix(rdf:=) +Prefix(xml:=) +Prefix(xsd:=) +Prefix(cito:=) +Prefix(foaf:=) +Prefix(rdfs:=) +Prefix(swrl:=) +Prefix(swrla:=) +Prefix(swrlb:=) +Prefix(subsets:=) +Prefix(oboInOwl:=) + + +Ontology( + +Import() +Annotation(dc:description "ROle ontology."@en) + +Declaration(Class(obo:RO_0040001)) +Declaration(Class(obo:RO_0040002)) +Declaration(Class(obo:RO_0040003)) +Declaration(Class(obo:RO_0040004)) +Declaration(Class(obo:RO_0040005)) +Declaration(Class(obo:RO_0040006)) +Declaration(Class(obo:RO_0040007)) +Declaration(Class(obo:RO_0040008)) +Declaration(Class(obo:RO_0040009)) +Declaration(Class(obo:RO_0040010)) +Declaration(Class(obo:RO_0040011)) +Declaration(Class(obo:RO_0040012)) +Declaration(Class(obo:RO_0040013)) +Declaration(Class(obo:RO_0040014)) +Declaration(Class(obo:RO_0040015)) +Declaration(Class(obo:RO_0040016)) +Declaration(Class(obo:RO_0040017)) +Declaration(Class(obo:RO_0040018)) +Declaration(Class(obo:RO_0040019)) +Declaration(Class(obo:RO_0040020)) +Declaration(Class(obo:RO_0040021)) +Declaration(Class(obo:RO_0040022)) +Declaration(Class(obo:RO_0040023)) +Declaration(Class(obo:RO_0040024)) +Declaration(Class(obo:RO_0040025)) +Declaration(Class(obo:RO_0040026)) +Declaration(Class(obo:RO_0040027)) +Declaration(Class(obo:RO_0040032)) +Declaration(Class(obo:RO_0040033)) + + + +############################ +# Classes +############################ + +# Class: obo:RO_0040001 (participant role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040001 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040001 "2018-07-07T23:00:17Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040001 "participant role") +SubClassOf(obo:RO_0040001 obo:BFO_0000023) + +# Class: obo:RO_0040002 (agent role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040002 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040002 "2018-07-07T23:00:24Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040002 "agent role") +EquivalentClasses(obo:RO_0040002 ObjectIntersectionOf(obo:BFO_0000034 obo:RO_0040013)) +SubClassOf(obo:RO_0040002 obo:BFO_0000034) +SubClassOf(obo:RO_0040002 obo:RO_0040013) + +# Class: obo:RO_0040003 (input role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040003 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040003 "2018-07-07T23:00:38Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040003 "input role") +SubClassOf(obo:RO_0040003 obo:RO_0040020) +SubClassOf(obo:RO_0040003 obo:RO_0040021) +DisjointUnion(obo:RO_0040003 obo:RO_0040006 obo:RO_0040007) + +# Class: obo:RO_0040004 (output role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040004 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040004 "2018-07-07T23:00:45Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040004 "output role") +SubClassOf(obo:RO_0040004 obo:RO_0040021) + +# Class: obo:RO_0040005 (catalyst role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040005 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040005 "2018-07-07T23:01:46Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040005 "catalyst role") +SubClassOf(obo:RO_0040005 obo:RO_0040002) + +# Class: obo:RO_0040006 (targeted input role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040006 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040006 "2018-07-07T23:03:01Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040006 "targeted input role") +EquivalentClasses(obo:RO_0040006 ObjectIntersectionOf(obo:RO_0040003 obo:RO_0040020)) + +# Class: obo:RO_0040007 (non-targeted input role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040007 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040007 "2018-07-07T23:03:22Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040007 "non-targeted input role") +SubClassOf(obo:RO_0040007 obo:RO_0040003) + +# Class: obo:RO_0040008 (substrate role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040008 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040008 "2018-07-07T23:04:11Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040008 "substrate role") +SubClassOf(obo:RO_0040008 obo:RO_0040006) + +# Class: obo:RO_0040009 (transportee role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040009 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040009 "2018-07-07T23:05:01Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040009 "transportee role") +SubClassOf(obo:RO_0040009 obo:RO_0040006) + +# Class: obo:RO_0040010 (transporter role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040010 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040010 "2018-07-07T23:05:10Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040010 "transporter role") +SubClassOf(obo:RO_0040010 obo:RO_0040002) + +# Class: obo:RO_0040011 (modified input role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040011 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040011 "2018-07-07T23:06:59Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040011 "modified input role") +SubClassOf(obo:RO_0040011 obo:RO_0040006) + +# Class: obo:RO_0040012 (disassembled role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040012 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040012 "2018-07-07T23:07:25Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040012 "disassembled role") +SubClassOf(obo:RO_0040012 obo:RO_0040011) + +# Class: obo:RO_0040013 (directed process participant role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040013 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040013 "2018-07-07T23:08:02Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040013 "directed process participant role") +EquivalentClasses(obo:RO_0040013 ObjectSomeValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:BFO_0000055 obo:BFO_0000034)))) +SubClassOf(obo:RO_0040013 obo:RO_0040001) +DisjointUnion(obo:RO_0040013 obo:RO_0040002 obo:RO_0040003 obo:RO_0040004) + +# Class: obo:RO_0040014 (product role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040014 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040014 "2018-07-07T23:10:08Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040014 "product role") +SubClassOf(obo:RO_0040014 obo:RO_0040022) + +# Class: obo:RO_0040015 (cofactor role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040015 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040015 "2018-07-07T23:12:34Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040015 "cofactor role") +SubClassOf(obo:RO_0040015 obo:RO_0040026) + +# Class: obo:RO_0040016 (consumed role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040016 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040016 "2018-07-07T23:16:16Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040016 "consumed role") +SubClassOf(obo:RO_0040016 obo:RO_0040011) + +# Class: obo:RO_0040017 (barrier role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040017 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040017 "2018-07-07T23:17:15Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040017 "barrier role") +SubClassOf(obo:RO_0040017 obo:RO_0040002) + +# Class: obo:RO_0040018 (intermediate output role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040018 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040018 "2018-07-07T23:18:11Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040018 "intermediate output role") +SubClassOf(obo:RO_0040018 obo:RO_0040023) + +# Class: obo:RO_0040019 (byproduct role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040019 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040019 "2018-07-07T23:18:18Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040019 "byproduct role") +SubClassOf(obo:RO_0040019 obo:RO_0040023) + +# Class: obo:RO_0040020 (targeted input or output role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040020 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040020 "2018-07-07T23:19:19Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040020 "targeted input or output role") +SubClassOf(obo:RO_0040020 obo:RO_0040021) + +# Class: obo:RO_0040021 (input or output role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040021 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040021 "2018-07-07T23:19:56Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040021 "input or output role") +SubClassOf(obo:RO_0040021 obo:RO_0040013) +DisjointUnion(obo:RO_0040021 obo:RO_0040003 obo:RO_0040004) + +# Class: obo:RO_0040022 (targeted output role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040022 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040022 "2018-07-07T23:21:13Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040022 "targeted output role") +EquivalentClasses(obo:RO_0040022 ObjectIntersectionOf(obo:RO_0040004 obo:RO_0040020)) + +# Class: obo:RO_0040023 (non-targeted output role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040023 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040023 "2018-07-07T23:22:45Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040023 "non-targeted output role") +SubClassOf(obo:RO_0040023 obo:RO_0040004) + +# Class: obo:RO_0040024 (regulator role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040024 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040024 "2018-07-07T23:24:08Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040024 "regulator role") +SubClassOf(obo:RO_0040024 obo:RO_0040002) + +# Class: obo:RO_0040025 (binding role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040025 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040025 "2018-07-07T23:26:26Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040025 "binding role") +SubClassOf(obo:RO_0040025 obo:RO_0040002) + +# Class: obo:RO_0040026 (helper input role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040026 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040026 "2018-07-07T23:28:32Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040026 "helper input role") +SubClassOf(obo:RO_0040026 obo:RO_0040007) + +# Class: obo:RO_0040027 (consumed reactant role) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040027 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040027 "2018-07-07T23:36:14Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040027 "consumed reactant role") +SubClassOf(obo:RO_0040027 obo:RO_0040016) + +# Class: obo:RO_0040032 (maintenance of state) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040032 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040032 "2018-07-25T20:40:21Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040032 "maintenance of state") +SubClassOf(obo:RO_0040032 obo:BFO_0000023) + +# Class: obo:RO_0040033 (maintenance of shape) + +AnnotationAssertion(oboInOwl:created_by obo:RO_0040033 "cjm"^^xsd:string) +AnnotationAssertion(oboInOwl:creation_date obo:RO_0040033 "2018-07-25T20:40:52Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:RO_0040033 "maintenance of shape") +SubClassOf(obo:RO_0040033 obo:RO_0040032) + + +) \ No newline at end of file From 645d29bb161e2f996fddc68a1835fa19641cbd57 Mon Sep 17 00:00:00 2001 From: cmungall Date: Tue, 23 Oct 2018 14:28:13 -0700 Subject: [PATCH 2/2] Refactored to be a mix of roles and functions, see #277 --- src/ontology/role-edit.owl | 68 ++++++++++++++++++++------------------ 1 file changed, 36 insertions(+), 32 deletions(-) diff --git a/src/ontology/role-edit.owl b/src/ontology/role-edit.owl index 720dabfe..2649b38b 100644 --- a/src/ontology/role-edit.owl +++ b/src/ontology/role-edit.owl @@ -56,20 +56,22 @@ Declaration(Class(obo:RO_0040033)) # Classes ############################ -# Class: obo:RO_0040001 (participant role) +# Class: obo:RO_0040001 (participant disposition) +AnnotationAssertion(obo:IAO_0000115 obo:RO_0040001 "A disposition played by a participant in a process.") AnnotationAssertion(oboInOwl:created_by obo:RO_0040001 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040001 "2018-07-07T23:00:17Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040001 "participant role") -SubClassOf(obo:RO_0040001 obo:BFO_0000023) +AnnotationAssertion(rdfs:label obo:RO_0040001 "participant disposition") +SubClassOf(obo:RO_0040001 obo:BFO_0000016) -# Class: obo:RO_0040002 (agent role) +# Class: obo:RO_0040002 (primary agent function) +AnnotationAssertion(obo:IAO_0000115 obo:RO_0040002 "A disposition played by a participant that acts to achieve the objectives of the directed process.") AnnotationAssertion(oboInOwl:created_by obo:RO_0040002 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040002 "2018-07-07T23:00:24Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040002 "agent role") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:RO_0040002 "agent function") +AnnotationAssertion(rdfs:label obo:RO_0040002 "primary agent function") EquivalentClasses(obo:RO_0040002 ObjectIntersectionOf(obo:BFO_0000034 obo:RO_0040013)) -SubClassOf(obo:RO_0040002 obo:BFO_0000034) SubClassOf(obo:RO_0040002 obo:RO_0040013) # Class: obo:RO_0040003 (input role) @@ -77,7 +79,6 @@ SubClassOf(obo:RO_0040002 obo:RO_0040013) AnnotationAssertion(oboInOwl:created_by obo:RO_0040003 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040003 "2018-07-07T23:00:38Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label obo:RO_0040003 "input role") -SubClassOf(obo:RO_0040003 obo:RO_0040020) SubClassOf(obo:RO_0040003 obo:RO_0040021) DisjointUnion(obo:RO_0040003 obo:RO_0040006 obo:RO_0040007) @@ -88,11 +89,11 @@ AnnotationAssertion(oboInOwl:creation_date obo:RO_0040004 "2018-07-07T23:00:45Z" AnnotationAssertion(rdfs:label obo:RO_0040004 "output role") SubClassOf(obo:RO_0040004 obo:RO_0040021) -# Class: obo:RO_0040005 (catalyst role) +# Class: obo:RO_0040005 (catalyst function) AnnotationAssertion(oboInOwl:created_by obo:RO_0040005 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040005 "2018-07-07T23:01:46Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040005 "catalyst role") +AnnotationAssertion(rdfs:label obo:RO_0040005 "catalyst function") SubClassOf(obo:RO_0040005 obo:RO_0040002) # Class: obo:RO_0040006 (targeted input role) @@ -123,11 +124,11 @@ AnnotationAssertion(oboInOwl:creation_date obo:RO_0040009 "2018-07-07T23:05:01Z" AnnotationAssertion(rdfs:label obo:RO_0040009 "transportee role") SubClassOf(obo:RO_0040009 obo:RO_0040006) -# Class: obo:RO_0040010 (transporter role) +# Class: obo:RO_0040010 (transporter function) AnnotationAssertion(oboInOwl:created_by obo:RO_0040010 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040010 "2018-07-07T23:05:10Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040010 "transporter role") +AnnotationAssertion(rdfs:label obo:RO_0040010 "transporter function") SubClassOf(obo:RO_0040010 obo:RO_0040002) # Class: obo:RO_0040011 (modified input role) @@ -137,18 +138,19 @@ AnnotationAssertion(oboInOwl:creation_date obo:RO_0040011 "2018-07-07T23:06:59Z" AnnotationAssertion(rdfs:label obo:RO_0040011 "modified input role") SubClassOf(obo:RO_0040011 obo:RO_0040006) -# Class: obo:RO_0040012 (disassembled role) +# Class: obo:RO_0040012 (disassembled disposition) AnnotationAssertion(oboInOwl:created_by obo:RO_0040012 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040012 "2018-07-07T23:07:25Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040012 "disassembled role") +AnnotationAssertion(rdfs:label obo:RO_0040012 "disassembled disposition") SubClassOf(obo:RO_0040012 obo:RO_0040011) -# Class: obo:RO_0040013 (directed process participant role) +# Class: obo:RO_0040013 (directed process participant disposition) +AnnotationAssertion(obo:IAO_0000115 obo:RO_0040013 "A disposition played in a process that is a realization of a function, or a causally connected set of function realizations.") AnnotationAssertion(oboInOwl:created_by obo:RO_0040013 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040013 "2018-07-07T23:08:02Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040013 "directed process participant role") +AnnotationAssertion(rdfs:label obo:RO_0040013 "directed process participant disposition") EquivalentClasses(obo:RO_0040013 ObjectSomeValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:BFO_0000055 obo:BFO_0000034)))) SubClassOf(obo:RO_0040013 obo:RO_0040001) DisjointUnion(obo:RO_0040013 obo:RO_0040002 obo:RO_0040003 obo:RO_0040004) @@ -167,32 +169,33 @@ AnnotationAssertion(oboInOwl:creation_date obo:RO_0040015 "2018-07-07T23:12:34Z" AnnotationAssertion(rdfs:label obo:RO_0040015 "cofactor role") SubClassOf(obo:RO_0040015 obo:RO_0040026) -# Class: obo:RO_0040016 (consumed role) +# Class: obo:RO_0040016 (consumed disposition) AnnotationAssertion(oboInOwl:created_by obo:RO_0040016 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040016 "2018-07-07T23:16:16Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040016 "consumed role") +AnnotationAssertion(rdfs:label obo:RO_0040016 "consumed disposition") SubClassOf(obo:RO_0040016 obo:RO_0040011) -# Class: obo:RO_0040017 (barrier role) +# Class: obo:RO_0040017 (barrier function) AnnotationAssertion(oboInOwl:created_by obo:RO_0040017 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040017 "2018-07-07T23:17:15Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040017 "barrier role") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:RO_0040017 "A function that is realized by influencing the flow of movement of a material entity, either directly through physical blocking or indirectly through fields, etc.") +AnnotationAssertion(rdfs:label obo:RO_0040017 "barrier function") SubClassOf(obo:RO_0040017 obo:RO_0040002) -# Class: obo:RO_0040018 (intermediate output role) +# Class: obo:RO_0040018 (intermediate output disposition) AnnotationAssertion(oboInOwl:created_by obo:RO_0040018 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040018 "2018-07-07T23:18:11Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040018 "intermediate output role") +AnnotationAssertion(rdfs:label obo:RO_0040018 "intermediate output disposition") SubClassOf(obo:RO_0040018 obo:RO_0040023) -# Class: obo:RO_0040019 (byproduct role) +# Class: obo:RO_0040019 (byproduct disposition) AnnotationAssertion(oboInOwl:created_by obo:RO_0040019 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040019 "2018-07-07T23:18:18Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040019 "byproduct role") +AnnotationAssertion(rdfs:label obo:RO_0040019 "byproduct disposition") SubClassOf(obo:RO_0040019 obo:RO_0040023) # Class: obo:RO_0040020 (targeted input or output role) @@ -207,6 +210,7 @@ SubClassOf(obo:RO_0040020 obo:RO_0040021) AnnotationAssertion(oboInOwl:created_by obo:RO_0040021 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040021 "2018-07-07T23:19:56Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label obo:RO_0040021 "input or output role") +SubClassOf(obo:RO_0040021 obo:BFO_0000023) SubClassOf(obo:RO_0040021 obo:RO_0040013) DisjointUnion(obo:RO_0040021 obo:RO_0040003 obo:RO_0040004) @@ -217,25 +221,25 @@ AnnotationAssertion(oboInOwl:creation_date obo:RO_0040022 "2018-07-07T23:21:13Z" AnnotationAssertion(rdfs:label obo:RO_0040022 "targeted output role") EquivalentClasses(obo:RO_0040022 ObjectIntersectionOf(obo:RO_0040004 obo:RO_0040020)) -# Class: obo:RO_0040023 (non-targeted output role) +# Class: obo:RO_0040023 (non-targeted output disposition) AnnotationAssertion(oboInOwl:created_by obo:RO_0040023 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040023 "2018-07-07T23:22:45Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040023 "non-targeted output role") +AnnotationAssertion(rdfs:label obo:RO_0040023 "non-targeted output disposition") SubClassOf(obo:RO_0040023 obo:RO_0040004) -# Class: obo:RO_0040024 (regulator role) +# Class: obo:RO_0040024 (regulator function) AnnotationAssertion(oboInOwl:created_by obo:RO_0040024 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040024 "2018-07-07T23:24:08Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040024 "regulator role") +AnnotationAssertion(rdfs:label obo:RO_0040024 "regulator function") SubClassOf(obo:RO_0040024 obo:RO_0040002) -# Class: obo:RO_0040025 (binding role) +# Class: obo:RO_0040025 (binding function) AnnotationAssertion(oboInOwl:created_by obo:RO_0040025 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040025 "2018-07-07T23:26:26Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040025 "binding role") +AnnotationAssertion(rdfs:label obo:RO_0040025 "binding function") SubClassOf(obo:RO_0040025 obo:RO_0040002) # Class: obo:RO_0040026 (helper input role) @@ -245,11 +249,11 @@ AnnotationAssertion(oboInOwl:creation_date obo:RO_0040026 "2018-07-07T23:28:32Z" AnnotationAssertion(rdfs:label obo:RO_0040026 "helper input role") SubClassOf(obo:RO_0040026 obo:RO_0040007) -# Class: obo:RO_0040027 (consumed reactant role) +# Class: obo:RO_0040027 (consumed reactant disposition) AnnotationAssertion(oboInOwl:created_by obo:RO_0040027 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040027 "2018-07-07T23:36:14Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label obo:RO_0040027 "consumed reactant role") +AnnotationAssertion(rdfs:label obo:RO_0040027 "consumed reactant disposition") SubClassOf(obo:RO_0040027 obo:RO_0040016) # Class: obo:RO_0040032 (maintenance of state) @@ -257,7 +261,7 @@ SubClassOf(obo:RO_0040027 obo:RO_0040016) AnnotationAssertion(oboInOwl:created_by obo:RO_0040032 "cjm"^^xsd:string) AnnotationAssertion(oboInOwl:creation_date obo:RO_0040032 "2018-07-25T20:40:21Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label obo:RO_0040032 "maintenance of state") -SubClassOf(obo:RO_0040032 obo:BFO_0000023) +SubClassOf(obo:RO_0040032 obo:BFO_0000016) # Class: obo:RO_0040033 (maintenance of shape)