From a46bc61d4e081f9deef1eac62abd4e79de582aa2 Mon Sep 17 00:00:00 2001 From: mdrishti <49712124+mdrishti@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:21:11 +0200 Subject: [PATCH 1/8] added 'has allelopath' as inverse of 'allelopath of' --- src/ontology/ro-edit.owl | 39 ++++++++++++++++++++++++--------------- 1 file changed, 24 insertions(+), 15 deletions(-) diff --git a/src/ontology/ro-edit.owl b/src/ontology/ro-edit.owl index f2c0e049..cda32616 100644 --- a/src/ontology/ro-edit.owl +++ b/src/ontology/ro-edit.owl @@ -52,6 +52,7 @@ Declaration(Class(obo:UPHENO_0001001)) Declaration(Class(foaf:image)) Declaration(ObjectProperty(obo:BFO_0000050)) Declaration(ObjectProperty(obo:BFO_0000051)) +Declaration(ObjectProperty(obo:RO_0000001)) Declaration(ObjectProperty(obo:RO_0000058)) Declaration(ObjectProperty(obo:RO_0000300)) Declaration(ObjectProperty(obo:RO_0000301)) @@ -1306,6 +1307,14 @@ AnnotationAssertion(oboInOwl:inSubset obo:BFO_0000066 obo:valid_for_go_ontology) AnnotationAssertion(oboInOwl:inSubset obo:BFO_0000066 obo:valid_for_gocam) AnnotationAssertion(rdfs:seeAlso obo:BFO_0000066 "https://wiki.geneontology.org/Occurs_in"^^xsd:anyURI) +# Object Property: obo:RO_0000001 (has allelopath) + +AnnotationAssertion(obo:IAO_0000119 obo:RO_0000001 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172429/") +AnnotationAssertion(rdfs:label obo:RO_0000001 "has allelopath"@en) +AnnotationAssertion(rdfs:seeAlso obo:RO_0000001 "Allelopathy is a phenomenon in which one organism releases chemicals to positively or negatively influence the growth, survival or reproduction of other organisms in its vicinity.") +SubObjectPropertyOf(obo:RO_0000001 obo:RO_0002574) +InverseObjectProperties(obo:RO_0000001 obo:RO_0002555) + # Object Property: obo:RO_0000052 (characteristic of) SubObjectPropertyOf(obo:RO_0000052 obo:RO_0002314) @@ -3887,8 +3896,8 @@ SubObjectPropertyOf(obo:RO_0002433 obo:RO_0002131) # Object Property: obo:RO_0002434 (interacts with) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002434 "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.") -AnnotationAssertion(obo:IAO_0000116 obo:RO_0002434 "Considering relabeling as 'pairwise interacts with'"^^xsd:anyURI) AnnotationAssertion(obo:IAO_0000116 obo:RO_0002434 "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.") +AnnotationAssertion(obo:IAO_0000116 obo:RO_0002434 "Considering relabeling as 'pairwise interacts with'"^^xsd:anyURI) AnnotationAssertion(obo:IAO_0000117 obo:RO_0002434 ) AnnotationAssertion(obo:IAO_0000232 obo:RO_0002434 "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.") AnnotationAssertion(oboInOwl:hasExactSynonym obo:RO_0002434 "in pairwise interaction with") @@ -6638,10 +6647,10 @@ ObjectPropertyRange(obo:RO_0017005 obo:COB_0000121) # Object Property: obo:RO_0017006 (has maximum capacity) +AnnotationAssertion(obo:IAO_0000112 obo:RO_0017006 "anticoagulant-containing test tube has maximum capacity 10 ml.") AnnotationAssertion(obo:IAO_0000115 obo:RO_0017006 "A relation that relates a container to a measurement datum that specifies the maximum capacity of the container. Capacity can refer to either weight or volume.") AnnotationAssertion(terms:contributor obo:RO_0017006 ) AnnotationAssertion(terms:contributor obo:RO_0017006 ) -AnnotationAssertion(obo:IAO_0000112 obo:RO_0017006 "anticoagulant-containing test tube has maximum capacity 10 ml.") AnnotationAssertion(rdfs:label obo:RO_0017006 "has maximum capacity"@en) ObjectPropertyDomain(obo:RO_0017006 obo:OBI_0000967) ObjectPropertyRange(obo:RO_0017006 obo:COB_0000121) @@ -7286,19 +7295,19 @@ DLSafeRule(Annotation(rdfs:seeAlso ) Variable()) ObjectPropertyAtom(obo:RO_0002333 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002013 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002578 Variable() Variable()))) DLSafeRule(Annotation(rdfs:label "inferring direct neg reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom(obo:RO_0002352 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002333 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002014 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002630 Variable() Variable()))) DLSafeRule(Annotation(rdfs:label "inferring direct positive reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom(obo:RO_0002352 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002333 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002015 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002629 Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "effector input is compound function input") Body(ObjectPropertyAtom(obo:RO_0002025 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002233 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002233 Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "Input of effector is input of its parent MF") Body(ObjectPropertyAtom(obo:RO_0002025 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002233 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002233 Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "if effector directly regulates X, its parent MF directly regulates X") Body(ObjectPropertyAtom(obo:RO_0002578 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002025 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002578 Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "if effector directly positively regulates X, its parent MF directly positively regulates X") Body(ObjectPropertyAtom(obo:RO_0002025 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002629 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002629 Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "if effector directly negatively regulates X, its parent MF directly negatively regulates X") Body(ObjectPropertyAtom(obo:RO_0002630 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002025 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002630 Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom(obo:RO_0002131 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002404 Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) -DLSafeRule(Annotation(rdfs:label "'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom(obo:RO_0002131 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002411 Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) -DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0002211 Variable() Variable()) ObjectPropertyAtom(obo:RO_0012011 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0012012 Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0002212 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002213 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002212 Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0002212 Variable() Variable()) ObjectPropertyAtom(obo:RO_0019002 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0019001 Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0002212 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002213 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002212 Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0002411 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002264 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002263 Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0002411 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002411 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0012011 Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "effector input is compound function input") Body(ObjectPropertyAtom(obo:RO_0002233 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002025 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002233 Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "Input of effector is input of its parent MF") Body(ObjectPropertyAtom(obo:RO_0002233 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002025 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002233 Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "if effector directly regulates X, its parent MF directly regulates X") Body(ObjectPropertyAtom(obo:RO_0002025 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002578 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002578 Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "if effector directly positively regulates X, its parent MF directly positively regulates X") Body(ObjectPropertyAtom(obo:RO_0002629 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002025 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002629 Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "if effector directly negatively regulates X, its parent MF directly negatively regulates X") Body(ObjectPropertyAtom(obo:RO_0002025 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002630 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002630 Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom(obo:RO_0002404 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002131 Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) +DLSafeRule(Annotation(rdfs:label "'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom(obo:RO_0002411 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002131 Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) +DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0012011 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002211 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0012012 Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0002213 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002212 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002212 Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0019002 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002212 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0019001 Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0002213 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002212 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002212 Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0002264 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002411 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0002263 Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0002411 Variable() Variable()) ObjectPropertyAtom(obo:RO_0002411 Variable() Variable()))Head(ObjectPropertyAtom(obo:RO_0012011 Variable() Variable()))) AnnotationAssertion(owl:deprecated obo:BFO_0000060 "true"^^xsd:boolean) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000092 "inverse of has disposition") AnnotationAssertion(oboInOwl:inSubset obo:RO_0000092 obo:RO_0002259) From 35387984f7b551c46867e654c1415c1c42a28a83 Mon Sep 17 00:00:00 2001 From: mdrishti <49712124+mdrishti@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:54:15 +0200 Subject: [PATCH 2/8] added 'has allelopath' as inverse of 'allelopath of'. Fixes #809 --- src/ontology/ro-edit.owl | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/ontology/ro-edit.owl b/src/ontology/ro-edit.owl index cda32616..1ab105f9 100644 --- a/src/ontology/ro-edit.owl +++ b/src/ontology/ro-edit.owl @@ -1309,9 +1309,11 @@ AnnotationAssertion(rdfs:seeAlso obo:BFO_0000066 "https://wiki.geneontology.org/ # Object Property: obo:RO_0000001 (has allelopath) +AnnotationAssertion(obo:IAO_0000115 obo:RO_0000001 "A relationship between organisms where one organism is influenced by the biochemicals produced by another.") AnnotationAssertion(obo:IAO_0000119 obo:RO_0000001 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172429/") +AnnotationAssertion(rdfs:comment obo:RO_0000001 "Allelopathy is a phenomenon in which one organism releases chemicals to positively or negatively influence the growth, survival or reproduction of other organisms in its vicinity.") AnnotationAssertion(rdfs:label obo:RO_0000001 "has allelopath"@en) -AnnotationAssertion(rdfs:seeAlso obo:RO_0000001 "Allelopathy is a phenomenon in which one organism releases chemicals to positively or negatively influence the growth, survival or reproduction of other organisms in its vicinity.") +AnnotationAssertion(rdfs:seeAlso obo:RO_0000001 "https://en.wikipedia.org/wiki/Allelopathy") SubObjectPropertyOf(obo:RO_0000001 obo:RO_0002574) InverseObjectProperties(obo:RO_0000001 obo:RO_0002555) From fda13e414719bbcc456af6abbeb5ff89674e4df5 Mon Sep 17 00:00:00 2001 From: Disha Tandon <49712124+mdrishti@users.noreply.github.com> Date: Tue, 15 Oct 2024 15:51:46 +0200 Subject: [PATCH 3/8] Update ro-idranges.owl to include ranges for mdrishti --- src/ontology/ro-idranges.owl | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/src/ontology/ro-idranges.owl b/src/ontology/ro-idranges.owl index 96ff7352..3266c2fd 100644 --- a/src/ontology/ro-idranges.owl +++ b/src/ontology/ro-idranges.owl @@ -119,3 +119,7 @@ EquivalentTo: xsd:integer[> 20100 , <= 20200] Datatype: idrange:27 Annotations: allocatedto: "Ray Stefancsik" EquivalentTo: xsd:integer[> 20201 , <= 20300] + +Datatype: idrange:28 +Annotations: allocatedto: "Disha Tandon" +EquivalentTo: xsd:integer[> 20301 , <= 20325] From 60602989dca7a213e7ce2a60ab23caf1e711fc70 Mon Sep 17 00:00:00 2001 From: Disha Tandon <49712124+mdrishti@users.noreply.github.com> Date: Tue, 15 Oct 2024 15:57:33 +0200 Subject: [PATCH 4/8] Update ro-edit.owl to include hasAllelopath (fixes oborel#809) --- src/ontology/ro-edit.owl | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/src/ontology/ro-edit.owl b/src/ontology/ro-edit.owl index 1ab105f9..f75490d5 100644 --- a/src/ontology/ro-edit.owl +++ b/src/ontology/ro-edit.owl @@ -1307,15 +1307,15 @@ AnnotationAssertion(oboInOwl:inSubset obo:BFO_0000066 obo:valid_for_go_ontology) AnnotationAssertion(oboInOwl:inSubset obo:BFO_0000066 obo:valid_for_gocam) AnnotationAssertion(rdfs:seeAlso obo:BFO_0000066 "https://wiki.geneontology.org/Occurs_in"^^xsd:anyURI) -# Object Property: obo:RO_0000001 (has allelopath) +# Object Property: obo:RO_0020301 (has allelopath) -AnnotationAssertion(obo:IAO_0000115 obo:RO_0000001 "A relationship between organisms where one organism is influenced by the biochemicals produced by another.") -AnnotationAssertion(obo:IAO_0000119 obo:RO_0000001 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172429/") -AnnotationAssertion(rdfs:comment obo:RO_0000001 "Allelopathy is a phenomenon in which one organism releases chemicals to positively or negatively influence the growth, survival or reproduction of other organisms in its vicinity.") -AnnotationAssertion(rdfs:label obo:RO_0000001 "has allelopath"@en) -AnnotationAssertion(rdfs:seeAlso obo:RO_0000001 "https://en.wikipedia.org/wiki/Allelopathy") -SubObjectPropertyOf(obo:RO_0000001 obo:RO_0002574) -InverseObjectProperties(obo:RO_0000001 obo:RO_0002555) +AnnotationAssertion(obo:IAO_0000115 obo:RO_0020301 "A relationship between organisms where one organism is influenced by the biochemicals produced by another.") +AnnotationAssertion(obo:IAO_0000119 obo:RO_0020301 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172429/") +AnnotationAssertion(rdfs:comment obo:RO_0020301 "Allelopathy is a phenomenon in which one organism releases chemicals to positively or negatively influence the growth, survival or reproduction of other organisms in its vicinity.") +AnnotationAssertion(rdfs:label obo:RO_0020301 "has allelopath"@en) +AnnotationAssertion(rdfs:seeAlso obo:RO_0020301 "https://en.wikipedia.org/wiki/Allelopathy") +SubObjectPropertyOf(obo:RO_0020301 obo:RO_0002574) +InverseObjectProperties(obo:RO_0020301 obo:RO_0002555) # Object Property: obo:RO_0000052 (characteristic of) @@ -7323,4 +7323,4 @@ AnnotationAssertion(oboInOwl:inSubset obo:RO_0002086 subsets:ro-eco) AnnotationAssertion(oboInOwl:inSubset obo:RO_0002089 subsets:ro-eco) AnnotationAssertion(oboInOwl:inSubset obo:RO_0002093 subsets:ro-eco) AnnotationAssertion(Annotation(rdfs:comment "This is an experimental annotation") obo:IAO_0000589 rdfs:isDefinedBy "is defined by") -) \ No newline at end of file +) From 7cfbb5d32d4f2905eab407bb7abe5d45972ce69f Mon Sep 17 00:00:00 2001 From: Disha Tandon <49712124+mdrishti@users.noreply.github.com> Date: Tue, 15 Oct 2024 16:04:58 +0200 Subject: [PATCH 5/8] Update ro-edit.owl. From 61a51a19b95fb686e24e078cc19867dbabdb8d2f Mon Sep 17 00:00:00 2001 From: Disha Tandon <49712124+mdrishti@users.noreply.github.com> Date: Tue, 15 Oct 2024 16:11:05 +0200 Subject: [PATCH 6/8] Update ro-edit.owl --- src/ontology/ro-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/ro-edit.owl b/src/ontology/ro-edit.owl index f75490d5..c60f4134 100644 --- a/src/ontology/ro-edit.owl +++ b/src/ontology/ro-edit.owl @@ -52,7 +52,7 @@ Declaration(Class(obo:UPHENO_0001001)) Declaration(Class(foaf:image)) Declaration(ObjectProperty(obo:BFO_0000050)) Declaration(ObjectProperty(obo:BFO_0000051)) -Declaration(ObjectProperty(obo:RO_0000001)) +Declaration(ObjectProperty(obo:RO_0020301)) Declaration(ObjectProperty(obo:RO_0000058)) Declaration(ObjectProperty(obo:RO_0000300)) Declaration(ObjectProperty(obo:RO_0000301)) From 58fdac24af91ac5673eef6c5b8c0cf4a7d3729e2 Mon Sep 17 00:00:00 2001 From: Disha Tandon <49712124+mdrishti@users.noreply.github.com> Date: Wed, 6 Nov 2024 09:22:48 +0100 Subject: [PATCH 7/8] Update ro-edit.owl Added definition to term "allelopath of" and subsequent inverse relation "has allelopath" --- src/ontology/ro-edit.owl | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/src/ontology/ro-edit.owl b/src/ontology/ro-edit.owl index c60f4134..274ccbe5 100644 --- a/src/ontology/ro-edit.owl +++ b/src/ontology/ro-edit.owl @@ -1308,12 +1308,12 @@ AnnotationAssertion(oboInOwl:inSubset obo:BFO_0000066 obo:valid_for_gocam) AnnotationAssertion(rdfs:seeAlso obo:BFO_0000066 "https://wiki.geneontology.org/Occurs_in"^^xsd:anyURI) # Object Property: obo:RO_0020301 (has allelopath) - -AnnotationAssertion(obo:IAO_0000115 obo:RO_0020301 "A relationship between organisms where one organism is influenced by the biochemicals produced by another.") -AnnotationAssertion(obo:IAO_0000119 obo:RO_0020301 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172429/") +AnnotationAssertion(obo:IAO_0000117 obo:RO_0020301 ) +AnnotationAssertion(obo:IAO_0000115 obo:RO_0020301 "inverse of allelopath of") AnnotationAssertion(rdfs:comment obo:RO_0020301 "Allelopathy is a phenomenon in which one organism releases chemicals to positively or negatively influence the growth, survival or reproduction of other organisms in its vicinity.") AnnotationAssertion(rdfs:label obo:RO_0020301 "has allelopath"@en) AnnotationAssertion(rdfs:seeAlso obo:RO_0020301 "https://en.wikipedia.org/wiki/Allelopathy") +AnnotationAssertion(rdfs:seeAlso obo:RO_0020301 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172429/") SubObjectPropertyOf(obo:RO_0020301 obo:RO_0002574) InverseObjectProperties(obo:RO_0020301 obo:RO_0002555) @@ -4848,11 +4848,14 @@ SubObjectPropertyOf(obo:RO_0002554 obo:RO_0002453) # Object Property: obo:RO_0002555 (allelopath of) AnnotationAssertion(obo:IAO_0000117 obo:RO_0002555 ) +AnnotationAssertion(obo:IAO_0000115 obo:RO_0002555 "A relationship between organisms where one organism is influenced by the biochemicals produced by another.") AnnotationAssertion(obo:IAO_0000119 obo:RO_0002555 "http://en.wikipedia.org/wiki/Allelopathy") AnnotationAssertion(oboInOwl:inSubset obo:RO_0002555 subsets:ro-eco) +AnnotationAssertion(rdfs:comment obo:RO_0002555 "Allelopathy is a phenomenon in which one organism releases chemicals to positively or negatively influence the growth, survival or reproduction of other organisms in its vicinity.") AnnotationAssertion(rdfs:label obo:RO_0002555 "allelopath of") AnnotationAssertion(rdfs:seeAlso obo:RO_0002555 "http://eol.org/schema/terms/allelopathyYes") -AnnotationAssertion(rdfs:seeAlso obo:RO_0002555 "x is an allelopath of y iff xis an organism produces one or more biochemicals that influence the growth, survival, and reproduction of y") +AnnotationAssertion(rdfs:seeAlso obo:RO_0002555 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172429/") +AnnotationAssertion(rdfs:seeAlso obo:RO_0002555 "x is an allelopath of y if x produces one or more biochemicals that influence the growth, survival, and reproduction of y") SubObjectPropertyOf(obo:RO_0002555 obo:RO_0002574) # Object Property: obo:RO_0002556 (pathogen of) From 70141d0989510f544354655770e24cb3ee5ab4b2 Mon Sep 17 00:00:00 2001 From: Disha Tandon <49712124+mdrishti@users.noreply.github.com> Date: Tue, 3 Dec 2024 11:05:27 +0100 Subject: [PATCH 8/8] Upd ro-edit.owl, kept direction-neutral information in the primary direction (except wiki in 'seeAlso') --- src/ontology/ro-edit.owl | 2 -- 1 file changed, 2 deletions(-) diff --git a/src/ontology/ro-edit.owl b/src/ontology/ro-edit.owl index 274ccbe5..aa63a9cb 100644 --- a/src/ontology/ro-edit.owl +++ b/src/ontology/ro-edit.owl @@ -1310,10 +1310,8 @@ AnnotationAssertion(rdfs:seeAlso obo:BFO_0000066 "https://wiki.geneontology.org/ # Object Property: obo:RO_0020301 (has allelopath) AnnotationAssertion(obo:IAO_0000117 obo:RO_0020301 ) AnnotationAssertion(obo:IAO_0000115 obo:RO_0020301 "inverse of allelopath of") -AnnotationAssertion(rdfs:comment obo:RO_0020301 "Allelopathy is a phenomenon in which one organism releases chemicals to positively or negatively influence the growth, survival or reproduction of other organisms in its vicinity.") AnnotationAssertion(rdfs:label obo:RO_0020301 "has allelopath"@en) AnnotationAssertion(rdfs:seeAlso obo:RO_0020301 "https://en.wikipedia.org/wiki/Allelopathy") -AnnotationAssertion(rdfs:seeAlso obo:RO_0020301 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172429/") SubObjectPropertyOf(obo:RO_0020301 obo:RO_0002574) InverseObjectProperties(obo:RO_0020301 obo:RO_0002555)