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Init db snic #183
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Init db snic #183
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Added a class for the names of servers supported by the system Refactored the server-specific sections to the following logic: 1- the template, 2- local/SNIC, 3- AWS and 4- report server incompatibility Removed SNIC specific packages (paramiko) and server functions SSHClient, SCPClient Refactored the init_db functions to make it easier to maintain
choose_species function now can use a list of preselected species or retrieve the list from the db updated the map to use the first site as the initial location removed snic-specific requirements to create frames and upload to Zooniverse Modified the way we create the path of the generated frames to work on different os Removed species id for frames created in spyfish as we already use the scientificname
I also added the "label" column as "commonName" to get the gbif format to match species information, specified to inferdateformat for spyfish surveys and, removed printing statements
I formated incorrect logging info messages, species values retrieved from widgets, removed unnecessary functions for tut#5, 6 and 7, and 8
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Sep 14, 2023
Uncommented the "add_project" function as it was triggerin some pylint errors and we currently don't use the function.
The species identifications task has a different task number depending on the kso project and workflow selected. Checking if the task is a dictionary is a way to ensure only those species identification tasks get flatten.
The subject for Medins have two species id expected for each frame this changes deal with the db constraints to match one to one
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The main changes to get SNIC projects working have been implemented so this branch is ready to merge |
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