From 60eada1a00bfd3ddabf7f2bc046f85d232a0e4c7 Mon Sep 17 00:00:00 2001 From: Melissa Linkert Date: Tue, 30 Jul 2024 17:30:15 -0500 Subject: [PATCH 1/3] Update 7.3.1 note on warnings to clarify potential broader impact --- sphinx/about/whats-new.rst | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/sphinx/about/whats-new.rst b/sphinx/about/whats-new.rst index 5b750326..a921481c 100644 --- a/sphinx/about/whats-new.rst +++ b/sphinx/about/whats-new.rst @@ -21,6 +21,13 @@ File format fixes and improvements: Bio-Formats improvements: * fixed warnings across all components for Java 9+ + - Among other things, this includes changes to how double values are parsed from strings in many format readers. + These changes are expected to be more lenient in allowing datasets with certain missing or invalid metadata + values (e.g. objective magnifications, detector voltages) to be read without throwing an exception. This means + that some datasets which failed to read in 7.3.0 may now suddenly work (or fail at a later point) with 7.3.1, + without an intentional targetted fix for that format. For specific changes to format readers, please see: + * https://github.com/ome/bioformats/pull/4182 + * https://github.com/ome/bioformats/pull/4177 * fixed a number of String comparisons Documentation improvements: From 6f7d19dda78975555af087d5ec9474c83ca042f4 Mon Sep 17 00:00:00 2001 From: Melissa Linkert Date: Wed, 31 Jul 2024 17:01:11 -0500 Subject: [PATCH 2/3] Try to fix indentation that caused build failure --- sphinx/about/whats-new.rst | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sphinx/about/whats-new.rst b/sphinx/about/whats-new.rst index a921481c..04e257b9 100644 --- a/sphinx/about/whats-new.rst +++ b/sphinx/about/whats-new.rst @@ -26,8 +26,8 @@ Bio-Formats improvements: values (e.g. objective magnifications, detector voltages) to be read without throwing an exception. This means that some datasets which failed to read in 7.3.0 may now suddenly work (or fail at a later point) with 7.3.1, without an intentional targetted fix for that format. For specific changes to format readers, please see: - * https://github.com/ome/bioformats/pull/4182 - * https://github.com/ome/bioformats/pull/4177 + - https://github.com/ome/bioformats/pull/4182 + - https://github.com/ome/bioformats/pull/4177 * fixed a number of String comparisons Documentation improvements: From 8a235b56d55203177fd7ff583597a189b79e8a4a Mon Sep 17 00:00:00 2001 From: Melissa Linkert Date: Wed, 31 Jul 2024 17:08:18 -0500 Subject: [PATCH 3/3] One more attempt at fixing build --- sphinx/about/whats-new.rst | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/sphinx/about/whats-new.rst b/sphinx/about/whats-new.rst index 04e257b9..a859fb1c 100644 --- a/sphinx/about/whats-new.rst +++ b/sphinx/about/whats-new.rst @@ -25,9 +25,8 @@ Bio-Formats improvements: These changes are expected to be more lenient in allowing datasets with certain missing or invalid metadata values (e.g. objective magnifications, detector voltages) to be read without throwing an exception. This means that some datasets which failed to read in 7.3.0 may now suddenly work (or fail at a later point) with 7.3.1, - without an intentional targetted fix for that format. For specific changes to format readers, please see: - - https://github.com/ome/bioformats/pull/4182 - - https://github.com/ome/bioformats/pull/4177 + without an intentional targetted fix for that format. For specific changes to format readers, please see + https://github.com/ome/bioformats/pull/4182 and https://github.com/ome/bioformats/pull/4177. * fixed a number of String comparisons Documentation improvements: