[Errno 22] Invalid argument on Windows 10

[camlloyd]

conda create -n bftools -c ome bftools

Running this as described in #1 works as expected using a clean install of Miniconda3 on macOS/spun-up Ubuntu 20.04 VM, but produces the error below on Windows 10.

Expand

(base) C:>conda create -n bftools -c ome bftools
Collecting package metadata (current_repodata.json): done
Solving environment: done

Package Plan

environment location: C:\ProgramData\Miniconda3\envs\bftools

added / updated specs:
- bftools

The following packages will be downloaded:

package                    |            build
---------------------------|-----------------
bftools-6.3.1              |                1        33.7 MB  ome
openjdk-11.0.6             |       he774522_1       295.7 MB
------------------------------------------------------------
                                       Total:       329.3 MB

The following NEW packages will be INSTALLED:

bftools ome/noarch::bftools-6.3.1-1
openjdk pkgs/main/win-64::openjdk-11.0.6-he774522_1

Proceed ([y]/n)? y

Downloading and Extracting Packages
bftools-6.3.1 | 33.7 MB | ############################################################################ | 100%
openjdk-11.0.6 | 295.7 MB | ############################################################################ | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
ERROR conda.core.link:_execute(700): An error occurred while installing package 'ome::bftools-6.3.1-1'.
Rolling back transaction: done

[Errno 22] Invalid argument: 'C:\ProgramData\Miniconda3\pkgs\bftools-6.3.1-1\bin\bf.sh'
()

(base) C:>

[joshmoore]

Thanks, @camlloyd. I've pushed a bld.bat file if you would like to test:

conda install conda-build
conda build .

Just working on the deployment to anaconda.org now.

[camlloyd]

This issue also affects the recipes for:

• ome/conda-bioformats2raw
• ome/conda-raw2ometiff

right?

[joshmoore]

Definitely. Still working on getting the Azure builds to upload the artifacts, and then I'll roll out to the rest.

see: https://dev.azure.com/openmicroscopy/conda-bftools/_build?definitionId=2

[joshmoore]

@camlloyd : https://anaconda.org/ome/bftools/files build 6.5.0-3 appears to be ready for Windows. Let us know how it goes for you.

[camlloyd]

Looks good to me - thanks!

EDIT: added output below

Expand

(base) C:>conda create -n bftools -c ome bftools
Collecting package metadata (current_repodata.json): done
Solving environment: done

Package Plan

environment location: C:\Users\cameron\miniconda3\envs\bftools

added / updated specs:
- bftools

The following packages will be downloaded:

package                    |            build
---------------------------|-----------------
bftools-6.5.0              |                3        34.8 MB  ome
openjdk-11.0.6             |       he774522_1       295.7 MB
------------------------------------------------------------
                                       Total:       330.5 MB

The following NEW packages will be INSTALLED:

bftools ome/win-64::bftools-6.5.0-3
openjdk pkgs/main/win-64::openjdk-11.0.6-he774522_1

Proceed ([y]/n)? y

Downloading and Extracting Packages
bftools-6.5.0 | 34.8 MB | ############################################################################ | 100%
openjdk-11.0.6 | 295.7 MB | ############################################################################ | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done

To activate this environment, use

$ conda activate bftools

To deactivate an active environment, use

$ conda deactivate

(base) C:>

[joshmoore]

Great, thanks for letting us know. Just getting blosc installed in Azure on the other repositories then they should be available as well.

[joshmoore]

I think that's all three pages now. Let us know if you have any issues.