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July 5-6 2023
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OMERO and IDR seminars and workshops, ABiS-GBI course

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In-person seminars and workshops on OMERO and IDR.

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May 25-26 2023

OMERO, IDR and OME-NGFF workshops, EMBL-EBI course

diff --git a/events/workshops-gbi-july-2023.html b/events/workshops-gbi-july-2023.html new file mode 100644 index 000000000..ae1a06931 --- /dev/null +++ b/events/workshops-gbi-july-2023.html @@ -0,0 +1,99 @@ +--- +layout: news-events +filename: events +title: July 2023 OME workshops +main-blurb: The OME Team gave two seminars and two practical sessions on OMERO and IDR as a part of the ABiS-GBI course held in Japan. +--- +
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Organisers: ABiS-GBI

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Locations: Okazaki and Kobe, Japan +

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Date: 5th July 2023

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Duration: 1 hour

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Seminar 2: Image Data Repository +

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Date: 5th July 2023

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Duration: 1 hour

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Workshop 1: Imaging workflows in OMERO +

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Date: 6th July 2023

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Duration: 1.5 hour

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Date: 6th July 2023

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Duration: 1.5 hour

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OMERO, a component of OME, is a software platform for image data management and analysis which was presented in this course. + Import, organisation, viewing, searching, annotation and publishing of imaging data with OMERO were shown.

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+ Further, the Image Data Resource (IDR) was introduced, concentrating on the submission workflow and explaining the value of curation for this added-value resource. +

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+ During the second day, we showed how to transition from manual data processing to automated processing workflows using applications against the OMERO API, how to integrate a variety of processing tools with OMERO such as Fiji/ImageJ and Cellpose + and how to automatically generate output ready for publication. +

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