From c7da0398f0fa7aed31f68d3535cdb0a07cfa6f2e Mon Sep 17 00:00:00 2001 From: pwalczysko
OMERO, a component of OME, is a software platform for image data management and analysis which was presented in this course. + Import, organisation, viewing, searching, annotation and publishing of imaging data with OMERO were shown.
++ Further, the Image Data Resource (IDR) was introduced, concentrating on the submission workflow and explaining the value of curation for this added-value resource. +
++ During the second day, we showed how to transition from manual data processing to automated processing workflows using applications against the OMERO API, how to integrate a variety of processing tools with OMERO such as Fiji/ImageJ and Cellpose + and how to automatically generate output ready for publication. +
+The presentations and the walkthrough for the seminars and OMERO workshop and the repository with Jupyter notebooks. +
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