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README.md

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imageJ_misc

This script contains a set of common task and functions that where developed to manage and analyze data. by Øyvind Ødegård Fougner

Metadata annotation

Contains a GUI user face that runs trough all files of a certain extensions and generates an yaml annotation file with experimental metadata for each image of that extension. Files must be compatible with bioformats

Image subsetting

Contains a script that splits xyzt, xyzp, or xyzpt images into many xyz images that are more simple to analyze by scripts

Segmentation

TBD