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Convert between formats. #71

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holmescharles opened this issue Apr 19, 2019 · 5 comments
Closed

Convert between formats. #71

holmescharles opened this issue Apr 19, 2019 · 5 comments

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@holmescharles
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Is there a trivial way to convert between flat binary to the open-ephys formats? I see there is a tool to convert between open-ephys and kwik. Has this been generalized?

Thanks!

@malfatti
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I wrote a python function to load binary files (see line 85), and another one to write data to a HDF5 file (although it will not match the .kwik architecture, see line 33). If it helps, I would be happy to open a PR to add them here :)

@holmescharles
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I appreciate that very much! But I was hoping to convert to the open-ephys format, which I don't think is trivial to handle.

At any rate, I just decided a few hours ago to stick with flat binaries. I was planning on using Spyking circus to sort spikes, but the OpenEphys data type doesn't seem to play nice.

@holmescharles
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Since I no longer need this, I'm going to close the issue. If anyone wants to re-open it, you're welcome to do so!

@matinsaba
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how did you get channel data from Binary formatted data?

@jsiegle
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jsiegle commented Jan 2, 2021

See #90

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4 participants