diff --git a/opencga-storage/opencga-storage-core/src/main/java/org/opencb/opencga/storage/core/variant/search/solr/SolrQueryParser.java b/opencga-storage/opencga-storage-core/src/main/java/org/opencb/opencga/storage/core/variant/search/solr/SolrQueryParser.java
index 0cf045ada4c..461b6e498ba 100644
--- a/opencga-storage/opencga-storage-core/src/main/java/org/opencb/opencga/storage/core/variant/search/solr/SolrQueryParser.java
+++ b/opencga-storage/opencga-storage-core/src/main/java/org/opencb/opencga/storage/core/variant/search/solr/SolrQueryParser.java
@@ -492,7 +492,7 @@ private String parseGenomicFilter(Query query) {
         // Consequence types (cts)
         String ctLogicalOperator = " OR ";
         if (StringUtils.isNotEmpty(query.getString(ANNOT_CONSEQUENCE_TYPE.key(), ""))) {
-            consequenceTypes = Arrays.asList(query.getString(ANNOT_CONSEQUENCE_TYPE.key()).split("[,;]"));
+            consequenceTypes = parseConsequenceTypes(Arrays.asList(query.getString(ANNOT_CONSEQUENCE_TYPE.key()).split("[,;]")));
             if (query.getString(ANNOT_CONSEQUENCE_TYPE.key()).contains(";")) {
                 ctLogicalOperator = " AND ";
                 // TODO This must be removed as soon as we have the Query procesing in use