Configuration

Configuration files

There are four configuration files, all of them are written in YAML format:

1. configuration.yml: general and common configuration for different OpenCGA componenents
2. catalog-configuration.yml: contains the specific configuration for OpenCGA Catalog such as metadata database
3. storage-configuration.yml: contains the storage-related configuration variables to index and query data
4. client-configuration.yml: this the only configuration required for user CLI (opencga.sh) and RESTful clients (Java, Python, R and JavaScript)

In the next section you will find all the variables together with the Maven Property (written using italics in parenthesis) used during the building to set the default value, remember that you can set these properties using a profile in the settings.xml file or in the mvn install command line itself.

General configuration

Catalog configuration

Storage configuration

Client configuration