Configuration

Configuration files

There are four configuration files, all of them are written in YAML format:

1. configuration.yml: general and common configuration for different OpenCGA componenents
2. catalog-configuration.yml: contains the specific configuration for OpenCGA Catalog such as metadata database
3. storage-configuration.yml: contains the storage-related configuration variables to index and query data
4. client-configuration.yml: this the only configuration required for user CLI (opencga.sh) and RESTful clients (Java, Python, R and JavaScript)

General configuration

Catalog configuration

Storage configuration

Client configuration