[PRE REVIEW]: rmstBayespara: An R Package for Bayesian Parametric Restricted Mean Survival Time #7621

editorialbot · 2024-12-30T14:14:29Z

Submitting author: @masahikoji (Masahiro Kojima)
Repository: https://github.com/masahikoji/rmstBayespara_paper
Branch with paper.md (empty if default branch): masahikoji
Version: v1.0.0
Editor: Pending
Reviewers: Pending
Managing EiC: Chris Vernon

Status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/40b7cc2116839960ab2b9b6e07fccc8a"><img src="https://joss.theoj.org/papers/40b7cc2116839960ab2b9b6e07fccc8a/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/40b7cc2116839960ab2b9b6e07fccc8a/status.svg)](https://joss.theoj.org/papers/40b7cc2116839960ab2b9b6e07fccc8a)

Author instructions

Thanks for submitting your paper to JOSS @masahikoji. Currently, there isn't a JOSS editor assigned to your paper.

@masahikoji if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSS submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

@editorialbot commands

The text was updated successfully, but these errors were encountered:

editorialbot · 2024-12-30T14:14:32Z

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf

editorialbot · 2024-12-30T14:14:52Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- None

🟡 SKIP DOIs

- No DOI given, and none found for title: Bayesian Parametric Methods for Deriving Distribut...
- No DOI given, and none found for title: Asymptotic equivalence of Bayes cross validation a...

❌ MISSING DOIs

- 10.1111/biom.13622 may be a valid DOI for title: Bayesian nonparametric analysis of restricted mean...
- 10.1200/jco.2014.55.2208 may be a valid DOI for title: Moving beyond the hazard ratio in quantifying the ...
- 10.1001/jamacardio.2017.2922 may be a valid DOI for title: Restricted mean survival time as a measure to inte...
- 10.1093/biomet/90.1.15 may be a valid DOI for title: Generalised linear models for correlated pseudo-ob...
- 10.1093/biostatistics/kxt050 may be a valid DOI for title: Predicting the restricted mean event time with the...

❌ INVALID DOIs

- None

editorialbot · 2024-12-30T14:14:53Z

Software report:

github.com/AlDanial/cloc v 1.98  T=0.01 s (397.3 files/s, 45159.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Markdown                         1             55             34            152
TeX                              1              6              1             65
YAML                             1              1              4             23
-------------------------------------------------------------------------------
SUM:                             3             62             39            240
-------------------------------------------------------------------------------

Commit count by author:

    19	masahikoji

editorialbot · 2024-12-30T14:14:57Z

Paper file info:

📄 Wordcount for paper.md is 1052

✅ The paper includes a Statement of need section

editorialbot · 2024-12-30T14:14:59Z

License info:

🔴 Failed to discover a valid open source license

editorialbot · 2024-12-30T14:15:43Z

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

editorialbot · 2024-12-30T14:16:27Z

Five most similar historical JOSS papers:

survPen: an R package for hazard and excess hazard modelling with multidimensional penalized splines
Submitting author: @fauvernierma
Handling editor: @csoneson (Active)
Reviewers: @corybrunson, @seabbs
Similarity score: 0.7007

MatSurv: Survival analysis and visualization in MATLAB
Submitting author: @jhcreed
Handling editor: @cMadan (Retired)
Reviewers: @dsurujon, @ManuelaS
Similarity score: 0.6982

Fitting a Gamma-Gompertz survival model to capture-recapture data collected on free-ranging animal populations
Submitting author: @oliviergimenez
Handling editor: @karthik (Retired)
Reviewers: @bbolker
Similarity score: 0.6888

SurPyval: Survival Analysis with Python
Submitting author: @derrynknife
Handling editor: @dfm (Active)
Reviewers: @CamDavidsonPilon, @MatthewReid854
Similarity score: 0.6872

aorsf: An R package for supervised learning using the oblique random survival forest
Submitting author: @bcjaeger
Handling editor: @danielskatz (Active)
Reviewers: @danielskatz
Similarity score: 0.6845

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

masahikoji · 2024-12-30T21:53:30Z

@editorialbot check repository https://github.com/masahikoji/rmstBayespara_paper/tree/joss-paper

…

2024/12/30 23:15、The Open Journals editorial robot ***@***.***>のメール: License info: 🔴 Failed to discover a valid open source license — Reply to this email directly, view it on GitHub <#7621 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/BJDXVYJ6GFQOI7PTLFKVQKD2IFIPRAVCNFSM6AAAAABUMDO3N2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDKNRVGUZTQNBRGA>. You are receiving this because you were mentioned.

editorialbot · 2024-12-30T21:53:58Z

Software report:

github.com/AlDanial/cloc v 1.98  T=0.01 s (389.0 files/s, 44217.5 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Markdown                         1             55             34            152
TeX                              1              6              1             65
YAML                             1              1              4             23
-------------------------------------------------------------------------------
SUM:                             3             62             39            240
-------------------------------------------------------------------------------

Commit count by author:

    19	masahikoji

editorialbot · 2024-12-30T21:54:04Z

Paper file info:

📄 Wordcount for paper.md is 1052

✅ The paper includes a Statement of need section

editorialbot · 2024-12-30T21:54:06Z

License info:

🔴 Failed to discover a valid open source license

masahikoji · 2024-12-30T22:53:08Z

@editorialbot check repository https://github.com/masahikoji/rmstBayespara_paper/tree/joss-paper

…

2024/12/31 6:53、小島将裕 ***@***.***>のメール: @editorialbot check repository https://github.com/masahikoji/rmstBayespara_paper/tree/joss-paper > 2024/12/30 23:15、The Open Journals editorial robot ***@***.***>のメール: > > > License info: > > 🔴 Failed to discover a valid open source license > > — > Reply to this email directly, view it on GitHub <#7621 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/BJDXVYJ6GFQOI7PTLFKVQKD2IFIPRAVCNFSM6AAAAABUMDO3N2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDKNRVGUZTQNBRGA>. > You are receiving this because you were mentioned. >

editorialbot · 2024-12-30T22:53:34Z

Software report:

github.com/AlDanial/cloc v 1.98  T=0.01 s (387.1 files/s, 43999.8 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Markdown                         1             55             34            152
TeX                              1              6              1             65
YAML                             1              1              4             23
-------------------------------------------------------------------------------
SUM:                             3             62             39            240
-------------------------------------------------------------------------------

Commit count by author:

    19	masahikoji

editorialbot · 2024-12-30T22:53:38Z

Paper file info:

📄 Wordcount for paper.md is 1052

✅ The paper includes a Statement of need section

editorialbot · 2024-12-30T22:53:40Z

License info:

🔴 Failed to discover a valid open source license

masahikoji · 2024-12-30T23:17:01Z

@editorialbot check repository

…

2024/12/31 7:52、小島将裕 ***@***.***>のメール: @editorialbot check repository

editorialbot · 2024-12-30T23:17:26Z

Software report:

github.com/AlDanial/cloc v 1.98  T=0.01 s (386.5 files/s, 43932.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Markdown                         1             55             34            152
TeX                              1              6              1             65
YAML                             1              1              4             23
-------------------------------------------------------------------------------
SUM:                             3             62             39            240
-------------------------------------------------------------------------------

Commit count by author:

    19	masahikoji

editorialbot · 2024-12-30T23:17:29Z

Paper file info:

📄 Wordcount for paper.md is 1052

✅ The paper includes a Statement of need section

editorialbot · 2024-12-30T23:17:31Z

License info:

🔴 Failed to discover a valid open source license

masahikoji · 2024-12-30T23:28:57Z

@editorialbot check repository

…

2024/12/31 8:16、小島将裕 ***@***.***>のメール: @editorialbot check repository

editorialbot · 2024-12-30T23:29:18Z

Software report:

github.com/AlDanial/cloc v 1.98  T=0.01 s (409.8 files/s, 46585.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Markdown                         1             55             34            152
TeX                              1              6              1             65
YAML                             1              1              4             23
-------------------------------------------------------------------------------
SUM:                             3             62             39            240
-------------------------------------------------------------------------------

Commit count by author:

    19	masahikoji

editorialbot · 2024-12-30T23:29:22Z

Paper file info:

📄 Wordcount for paper.md is 1052

✅ The paper includes a Statement of need section

editorialbot · 2024-12-30T23:29:24Z

License info:

🔴 Failed to discover a valid open source license

masahikoji · 2024-12-30T23:34:32Z

@editorialbot check repository

…

2024/12/31 8:28、小島将裕 ***@***.***>のメール: @editorialbot check repository

editorialbot · 2024-12-30T23:34:55Z

Software report:

github.com/AlDanial/cloc v 1.98  T=0.01 s (402.2 files/s, 45717.0 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Markdown                         1             55             34            152
TeX                              1              6              1             65
YAML                             1              1              4             23
-------------------------------------------------------------------------------
SUM:                             3             62             39            240
-------------------------------------------------------------------------------

Commit count by author:

    20	masahikoji

editorialbot · 2024-12-30T23:35:00Z

Paper file info:

📄 Wordcount for paper.md is 1052

✅ The paper includes a Statement of need section

editorialbot · 2024-12-30T23:35:02Z

License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

masahikoji · 2024-12-30T23:48:40Z

@editorialbot check repository

…

2024/12/31 8:34、小島将裕 ***@***.***>のメール: @editorialbot check repository

editorialbot · 2024-12-30T23:49:07Z

Software report:

github.com/AlDanial/cloc v 1.98  T=0.01 s (790.6 files/s, 101917.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
R                                5             12            111            758
Markdown                         4             95             34            308
TeX                              1              6              1             65
YAML                             1              1              4             23
-------------------------------------------------------------------------------
SUM:                            11            114            150           1154
-------------------------------------------------------------------------------

Commit count by author:

    33	masahikoji

editorialbot · 2024-12-30T23:49:14Z

Paper file info:

📄 Wordcount for paper.md is 1694

✅ The paper includes a Statement of need section

editorialbot · 2024-12-30T23:49:17Z

License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

crvernon · 2025-01-03T15:16:50Z

@editorialbot review scope

👋 @masahikoji - I am going to run this by our larger editorial board to ensure that it meets our scope requirements. I'll let you know how things go ASAP. In the meantime, please ensure that the word length of your paper is around 1000 words. Thanks!

editorialbot · 2025-01-03T15:16:52Z

I'm sorry human, I don't understand that. You can see what commands I support by typing:

@editorialbot commands

crvernon · 2025-01-03T15:18:13Z

@editorialbot query scope

editorialbot · 2025-01-03T15:18:17Z

Submission flagged for editorial review.

crvernon · 2025-01-17T12:57:27Z

@editorialbot reject

👋 @masahikoji - At this time we must reject this submission due to it not meeting our substantial scholarly effort requirements per the following:

Code base too small
Code base too young (low commit history)

Thank you.

editorialbot · 2025-01-17T12:57:30Z

Paper rejected.

editorialbot added pre-review Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning labels Dec 30, 2024

editorialbot added the TeX label Dec 30, 2024

editorialbot added the R label Dec 30, 2024

editorialbot added the query-scope Submissions of uncertain scope for JOSS label Jan 3, 2025

editorialbot added the rejected label Jan 17, 2025

editorialbot closed this as completed Jan 17, 2025

[PRE REVIEW]: rmstBayespara: An R Package for Bayesian Parametric Restricted Mean Survival Time #7621

[PRE REVIEW]: rmstBayespara: An R Package for Bayesian Parametric Restricted Mean Survival Time #7621

Comments

editorialbot commented Dec 30, 2024

Status

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

masahikoji commented Dec 30, 2024 via email

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

masahikoji commented Dec 30, 2024 via email

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

masahikoji commented Dec 30, 2024 via email

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

masahikoji commented Dec 30, 2024 via email

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

masahikoji commented Dec 30, 2024 via email

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

masahikoji commented Dec 30, 2024 via email

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

editorialbot commented Dec 30, 2024

crvernon commented Jan 3, 2025

editorialbot commented Jan 3, 2025

crvernon commented Jan 3, 2025

editorialbot commented Jan 3, 2025

crvernon commented Jan 17, 2025

editorialbot commented Jan 17, 2025