From e8b7cc3f620ad20af72d8c6168dfc5219e452b82 Mon Sep 17 00:00:00 2001
From: Simona Carini <simona@openmhealth.org>
Date: Tue, 30 Jan 2024 17:32:48 -0800
Subject: [PATCH] Updated blood glucose schema to reference IEEE schemas and
 added sample data

---
 schema/omh/blood-glucose-4.0.json             | 72 +++++++++++++++++++
 schema/omh/blood-glucose-4.x.json             |  1 +
 .../4.0/shouldFail/empty-document.json        |  1 +
 .../invalid-descriptive-statistic.json        | 13 ++++
 .../shouldFail/invalid-specimen-source.json   |  7 ++
 ...invalid-temporal-relationship-to-meal.json |  7 ++
 ...nvalid-temporal-relationship-to-sleep.json |  7 ++
 .../4.0/shouldFail/invalid-time-interval.json | 11 +++
 .../4.0/shouldFail/missing-time-frame.json    |  6 ++
 .../shouldPass/with-date-time-time-frame.json |  9 +++
 .../with-descriptive-statistic.json           | 13 ++++
 .../4.0/shouldPass/with-everything.json       | 16 +++++
 .../with-temporal-relationship-to-meal.json   | 10 +++
 .../with-temporal-relationship-to-sleep.json  | 10 +++
 14 files changed, 183 insertions(+)
 create mode 100644 schema/omh/blood-glucose-4.0.json
 create mode 120000 schema/omh/blood-glucose-4.x.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldFail/empty-document.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldFail/invalid-descriptive-statistic.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldFail/invalid-specimen-source.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldFail/invalid-temporal-relationship-to-meal.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldFail/invalid-temporal-relationship-to-sleep.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldFail/invalid-time-interval.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldFail/missing-time-frame.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldPass/with-date-time-time-frame.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldPass/with-descriptive-statistic.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldPass/with-everything.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldPass/with-temporal-relationship-to-meal.json
 create mode 100644 test-data/omh/blood-glucose/4.0/shouldPass/with-temporal-relationship-to-sleep.json

diff --git a/schema/omh/blood-glucose-4.0.json b/schema/omh/blood-glucose-4.0.json
new file mode 100644
index 00000000..2f743b0c
--- /dev/null
+++ b/schema/omh/blood-glucose-4.0.json
@@ -0,0 +1,72 @@
+{
+    "$schema": "http://json-schema.org/draft-07/schema#",
+    "$id": "https://w3id.org/openmhealth/schemas/omh/blood-glucose-4.0.json",
+    "description": "This schema represents a person's blood glucose level.",
+    "type": "object",
+
+    "references": [
+        {
+            "description": "The SNOMED code represents Blood glucose level (finding)",
+            "url": "http://purl.bioontology.org/ontology/SNOMEDCT/365812005"
+        }
+    ],
+    "definitions": {
+        "unit_value": {
+            "$ref": "https://w3id.org/ieee/ieee-1752-schema/unit-value-1.0.json"
+        },
+        "specimen_source": {
+            "$ref": "specimen-source-2.x.json"
+        },
+        "time_frame": {
+            "$ref": "https://w3id.org/ieee/ieee-1752-schema/time-frame-1.0.json"
+        },
+        "temporal_relationship_to_meal": {
+            "$ref": "temporal-relationship-to-meal-1.x.json"
+        },
+        "temporal_relationship_to_sleep": {
+            "$ref": "temporal-relationship-to-sleep-1.x.json"
+        },
+        "descriptive_statistic": {
+            "$ref": "https://w3id.org/ieee/ieee-1752-schema/descriptive-statistic-1.0.json"
+        }
+    },
+
+    "properties": {
+        "blood_glucose": {
+            "allOf": [
+                {
+                    "$ref": "#/definitions/unit_value"
+                },
+                {
+                    "properties": {
+                        "unit": {
+                            "enum": [
+                                "mg/dL",
+                                "mmol/L"
+                            ]
+                        }
+                    }
+                }
+            ]
+        },
+        "specimen_source": {
+            "$ref": "#/definitions/specimen_source"
+        },
+        "effective_time_frame": {
+            "$ref": "#/definitions/time_frame"
+        },
+        "temporal_relationship_to_meal": {
+            "$ref": "#/definitions/temporal_relationship_to_meal"
+        },
+        "temporal_relationship_to_sleep": {
+            "$ref": "#/definitions/temporal_relationship_to_sleep"
+        },
+        "descriptive_statistic": {
+            "$ref": "#/definitions/descriptive_statistic"
+        }
+    },
+    "required": [
+        "blood_glucose",
+        "effective_time_frame"
+    ]
+}
\ No newline at end of file
diff --git a/schema/omh/blood-glucose-4.x.json b/schema/omh/blood-glucose-4.x.json
new file mode 120000
index 00000000..6338de0f
--- /dev/null
+++ b/schema/omh/blood-glucose-4.x.json
@@ -0,0 +1 @@
+blood-glucose-4.0.json
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldFail/empty-document.json b/test-data/omh/blood-glucose/4.0/shouldFail/empty-document.json
new file mode 100644
index 00000000..9e26dfee
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldFail/empty-document.json
@@ -0,0 +1 @@
+{}
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldFail/invalid-descriptive-statistic.json b/test-data/omh/blood-glucose/4.0/shouldFail/invalid-descriptive-statistic.json
new file mode 100644
index 00000000..499918bc
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldFail/invalid-descriptive-statistic.json
@@ -0,0 +1,13 @@
+{
+    "blood_glucose": {
+        "unit": "mg/dL",
+        "value": 95
+    },
+    "effective_time_frame": {
+        "time_interval": {
+            "start_date_time": "2013-02-05T07:25:00Z",
+            "end_date_time": "2013-06-05T07:25:00Z"
+        }
+    },
+    "descriptive_statistic": "minmum"
+}
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldFail/invalid-specimen-source.json b/test-data/omh/blood-glucose/4.0/shouldFail/invalid-specimen-source.json
new file mode 100644
index 00000000..1a22bffd
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldFail/invalid-specimen-source.json
@@ -0,0 +1,7 @@
+{
+    "blood_glucose": {
+        "unit": "mg/dL",
+        "value": 95
+    },
+    "specimen_source": "fluid"
+}
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldFail/invalid-temporal-relationship-to-meal.json b/test-data/omh/blood-glucose/4.0/shouldFail/invalid-temporal-relationship-to-meal.json
new file mode 100644
index 00000000..7f44bffd
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldFail/invalid-temporal-relationship-to-meal.json
@@ -0,0 +1,7 @@
+{
+    "blood_glucose": {
+        "unit": "mg/dL",
+        "value": 95
+    },
+    "temporal_relationship_to_meal": "fsting"
+}
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldFail/invalid-temporal-relationship-to-sleep.json b/test-data/omh/blood-glucose/4.0/shouldFail/invalid-temporal-relationship-to-sleep.json
new file mode 100644
index 00000000..5ee3559f
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldFail/invalid-temporal-relationship-to-sleep.json
@@ -0,0 +1,7 @@
+{
+    "blood_glucose": {
+        "unit": "mg/dL",
+        "value": 95
+    },
+    "temporal_relationship_to_sleep": "bfore sleeping"
+}
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldFail/invalid-time-interval.json b/test-data/omh/blood-glucose/4.0/shouldFail/invalid-time-interval.json
new file mode 100644
index 00000000..16138f48
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldFail/invalid-time-interval.json
@@ -0,0 +1,11 @@
+{
+    "blood_glucose": {
+        "unit": "mg/dL",
+        "value": 120
+    },
+    "effective_time_frame": {
+        "time_interval": {
+            "start_date_time": "2013-02-05T07:25:00Z"
+        }
+    }
+}
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldFail/missing-time-frame.json b/test-data/omh/blood-glucose/4.0/shouldFail/missing-time-frame.json
new file mode 100644
index 00000000..5e7d950f
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldFail/missing-time-frame.json
@@ -0,0 +1,6 @@
+{
+    "blood_glucose": {
+        "unit": "mg/dL",
+        "value": 120
+    }
+}
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldPass/with-date-time-time-frame.json b/test-data/omh/blood-glucose/4.0/shouldPass/with-date-time-time-frame.json
new file mode 100644
index 00000000..132a56f5
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldPass/with-date-time-time-frame.json
@@ -0,0 +1,9 @@
+{
+    "blood_glucose": {
+        "unit": "mg/dL",
+        "value": 95
+    },
+    "effective_time_frame": {
+        "date_time": "2013-02-05T07:25:00Z"
+    }
+}
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldPass/with-descriptive-statistic.json b/test-data/omh/blood-glucose/4.0/shouldPass/with-descriptive-statistic.json
new file mode 100644
index 00000000..84eb49f0
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldPass/with-descriptive-statistic.json
@@ -0,0 +1,13 @@
+{
+    "blood_glucose": {
+        "unit": "mg/dL",
+        "value": 120
+    },
+    "effective_time_frame": {
+        "time_interval": {
+            "start_date_time": "2013-02-05T07:25:00Z",
+            "end_date_time": "2013-06-05T07:25:00Z"
+        }
+    },
+    "descriptive_statistic": "minimum"
+}
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldPass/with-everything.json b/test-data/omh/blood-glucose/4.0/shouldPass/with-everything.json
new file mode 100644
index 00000000..d8c52069
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldPass/with-everything.json
@@ -0,0 +1,16 @@
+{
+    "blood_glucose": {
+        "unit": "mg/dL",
+        "value": 95
+    },
+    "effective_time_frame": {
+        "time_interval": {
+            "start_date_time": "2013-02-05T07:25:00Z",
+            "end_date_time": "2013-06-05T07:25:00Z"
+        }
+    },
+    "specimen_source": "capillary blood",
+    "temporal_relationship_to_meal": "fasting",
+    "temporal_relationship_to_sleep": "on waking",
+    "descriptive_statistic": "minimum"
+}
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldPass/with-temporal-relationship-to-meal.json b/test-data/omh/blood-glucose/4.0/shouldPass/with-temporal-relationship-to-meal.json
new file mode 100644
index 00000000..3559f3b8
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldPass/with-temporal-relationship-to-meal.json
@@ -0,0 +1,10 @@
+{
+    "blood_glucose": {
+        "unit": "mg/dL",
+        "value": 95
+    },
+    "effective_time_frame": {
+        "date_time": "2013-02-05T07:25:00Z"
+    },
+    "temporal_relationship_to_meal": "fasting"
+}
\ No newline at end of file
diff --git a/test-data/omh/blood-glucose/4.0/shouldPass/with-temporal-relationship-to-sleep.json b/test-data/omh/blood-glucose/4.0/shouldPass/with-temporal-relationship-to-sleep.json
new file mode 100644
index 00000000..c78b8279
--- /dev/null
+++ b/test-data/omh/blood-glucose/4.0/shouldPass/with-temporal-relationship-to-sleep.json
@@ -0,0 +1,10 @@
+{
+    "blood_glucose": {
+        "unit": "mg/dL",
+        "value": 95
+    },
+    "effective_time_frame": {
+        "date_time": "2013-02-05T20:25:00Z"
+    },
+    "temporal_relationship_to_sleep": "before sleeping"
+}
\ No newline at end of file