From ada410177d780b6d5e782d4af8b4c160cf282513 Mon Sep 17 00:00:00 2001 From: dorien-er Date: Mon, 22 Sep 2025 17:43:12 +0200 Subject: [PATCH] pin versions --- src/ingestion_qc/generate_html/config.vsh.yaml | 4 ++-- src/ingestion_qc/generate_html/script.sh | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/ingestion_qc/generate_html/config.vsh.yaml b/src/ingestion_qc/generate_html/config.vsh.yaml index f3cd786..be5ac59 100644 --- a/src/ingestion_qc/generate_html/config.vsh.yaml +++ b/src/ingestion_qc/generate_html/config.vsh.yaml @@ -53,8 +53,8 @@ engines: - type: docker run: | npm install -g pnpm@latest-10 \ - && cd /opt && git clone https://github.com/openpipelines-bio/qc_report_generator.git \ - && cd qc_report_generator && pnpm install \ + && cd /opt && git clone -b v0.1.0 https://github.com/openpipelines-bio/siqc.git \ + && cd siqc && pnpm install \ && true runners: diff --git a/src/ingestion_qc/generate_html/script.sh b/src/ingestion_qc/generate_html/script.sh index edd613e..6bdc256 100755 --- a/src/ingestion_qc/generate_html/script.sh +++ b/src/ingestion_qc/generate_html/script.sh @@ -2,7 +2,7 @@ ABSOLUTE_INPUT_DATA=$(realpath $par_input_data) ABSOLUTE_INPUT_STRUCTURE=$(realpath $par_input_structure) ABSOLUTE_OUTPUT=$(realpath $par_output_qc_report) -cd /opt/qc_report_generator +cd /opt/siqc mkdir src/data echo "Compressing input data..."