From 48db076d743e61b57d8d5c720f83676d1cc8ace4 Mon Sep 17 00:00:00 2001 From: Nirmayi Date: Wed, 6 Nov 2024 08:51:48 +0100 Subject: [PATCH] fix defaults --- src/data_processors/dataset_simulator/config.vsh.yaml | 4 ++-- src/data_processors/dataset_simulator/script.py | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/src/data_processors/dataset_simulator/config.vsh.yaml b/src/data_processors/dataset_simulator/config.vsh.yaml index a9a56a3..f8e8860 100644 --- a/src/data_processors/dataset_simulator/config.vsh.yaml +++ b/src/data_processors/dataset_simulator/config.vsh.yaml @@ -32,8 +32,8 @@ argument_groups: default: 1.0 - name: "--n_obs" type: integer - description: Number of spatial observations to generate. Default value is 100. - default: 100 + description: Number of spatial observations to generate. Default value is 1000. + default: 1000 - name: "--cell_lb" type: integer description: Lower bound for number of cells at each spot. Default value is 10. diff --git a/src/data_processors/dataset_simulator/script.py b/src/data_processors/dataset_simulator/script.py index 115cbea..3294437 100644 --- a/src/data_processors/dataset_simulator/script.py +++ b/src/data_processors/dataset_simulator/script.py @@ -55,9 +55,9 @@ def generate_synthetic_dataset( cell_ub: int upper bound for number of cells at each spot. Default value is 30. umi_lb: int - lower bound for number of UMIs at each spot. Default value is 10. + lower bound for number of UMIs at each spot. Default value is 1000. umi_ub: int - upper bound for number of UMIs at each spot. Default value is 30. + upper bound for number of UMIs at each spot. Default value is 5000. Returns -------