From 8fe4d0e617c6a097fdd59cabea5d69cd58db683e Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 18:55:29 +0600 Subject: [PATCH 01/79] arrays_shape added, docs dependencies fixed --- docs/deker/collection_schema.rst | 69 ++++++++++++++++++++++++++++---- requirements_dev.txt | 11 ++--- 2 files changed, 67 insertions(+), 13 deletions(-) diff --git a/docs/deker/collection_schema.rst b/docs/deker/collection_schema.rst index 7cc9534..2ea5f91 100755 --- a/docs/deker/collection_schema.rst +++ b/docs/deker/collection_schema.rst @@ -580,17 +580,38 @@ VArray Grid Perhaps it is one of the most obscure issues. ``VArray`` shall be split into files, but it cannot decide itself how it shall be done. It's up to you, how you are going to split your data. +There are two ways: ``vgrid`` and ``arrays_shape`` parameters. You can choose any of them, +but not both. Any of these parameters shall be defined as a tuple of integers which quantity +shall be exactly similar to the quantity of the dimensions and its values shall divide ``VArray`` +shape without remainders. -``vgrid`` parameter shall be defined as a tuple of integers which quantity shall be exactly similar -to the quantity of the dimensions. Its values shall divide ``VArray`` shape without remainders. +Our schema has two dimensions with sizes ``100`` and ``200`` correspondingly, what tells us +that the ``VArray`` shape will be ``(100, 200)``. We shall split it either by ``vgrid`` or +with ``arrays_shape``. -Our schema has two dimensions with sizes ``100`` and ``200`` correspondingly, what tells us that -the ``VArray`` shape will be ``(100, 200)``. And we set ``vgrid`` as ``(50, 20)``. What shall -happen? No magic, just a simple math:: +``vgrid`` ++++++++++ + +Let's set ``vgrid`` as ``(50, 20)``. + +.. code-block:: python + + from deker import VArraySchema + + varray_schema = VArraySchema( + dimensions=dimensions, + dtype=np.int64, + fill_value=-99999, + vgrid=(50, 20) + # attributes are not passed as they are optional + ) + +What shall happen? No magic, just a simple math:: (100, 200) / (50, 20) = (2.0, 10.0) -``(2, 10)`` - that will be the shape of all the ``Array``, produced by the ``VArray``. +``(2, 10)`` - that will be the shape of all the ``Array``, produced by the ``VArray``, or the +``arrays_shape``. If we do not want to divide any dimension into pieces and want to keep it in full size in all the ``Array``, we shall pass ``1`` in ``vgrid`` for that dimension:: @@ -600,8 +621,41 @@ If we do not want to divide any dimension into pieces and want to keep it in ful Thus, the first dimension will retain its initial size for all the arrays, and their shape will be ``(100, 10)``. -OK! Now we are finally ready to create our first database and we need ``Client``. +If the ``vgrid`` setting is correct, it will be saved to the collection metadata and applied every +time to all new ``VArrays``. + +``arrays_shape`` ++++++++++++++++++ + +Sometimes it is easier to decide on the shape of the final ``Arrays`` than on a ``vgrid``. +In this case you can use ``arrays_shape`` parameter. + +.. code-block:: python + from deker import VArraySchema + + varray_schema = VArraySchema( + dimensions=dimensions, + dtype=np.int64, + fill_value=-99999, + arrays_shape=(2, 10) + # attributes are not passed as they are optional + ) + +By providing this parameter you manually set the shape of each inner ``Array`` to the +passed value and produce the ``vgrid`` of your ``VArrays``. + +The ``VArray's`` shape will be divided by this setting:: + + (100, 200) / (2, 10) = (50.0, 20.0) + +``(50, 20)`` - that will be the ``vgrid`` of the ``VArray``. + +If you use ``arrays_shape`` for defining a ``VArraySchema``, not the passed setting, but the +calculated ``vgrid`` will be saved to the collection metadata. On each collection +invocation ``arrays_shape`` is calculated from the ``vgrid`` value restored from the metadata. + +OK! Now we are finally ready to create our first database and we need ``Client``. Creating Collection =================== @@ -733,4 +787,3 @@ Now there is a new path ``/tmp/deker/collections/weather`` on your local drive w store the data relative to the ``Collection`` named ``weather``. Each ``Array`` will contain a pack of daily 24-hours weather data for each entire latitude and longitude degree: ``temperature``, ``humidity``, ``pressure`` and ``wind_speed``. - diff --git a/requirements_dev.txt b/requirements_dev.txt index daadfe6..f565277 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -22,8 +22,9 @@ pytest-mock==3.10.0 xarray>=2023.5.0 bandit==1.7.5 tox==4.6.3 -m2r2 -sphinx-rtd-theme -enum_tools -sphinx_toolbox -doc8 +docutils==0.17 +m2r2==0.3.2 +sphinx-rtd-theme==1.2.2 +enum_tools==0.10.0 +sphinx_toolbox==3.5.0 +doc8==0.11.2 From e9dbde43446baac2acb63467b5114cd03f5e758d Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 19:19:38 +0600 Subject: [PATCH 02/79] doc8 added to pre-commit, config moved to pyproject --- .pre-commit-config.yaml | 11 +++++++++++ doc8.ini | 3 --- pyproject.toml | 4 ++++ 3 files changed, 15 insertions(+), 3 deletions(-) delete mode 100644 doc8.ini diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 51cf050..874f8b9 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -150,3 +150,14 @@ repos: always_run: true stages: - push + + - id: doc8 + name: doc8 + description: This hook runs doc8 for linting docs + entry: doc8 docs/deker + language: python + files: \.rst$ + require_serial: true + args: [--config pyproject.toml] + stages: + - commit diff --git a/doc8.ini b/doc8.ini deleted file mode 100644 index 101ec30..0000000 --- a/doc8.ini +++ /dev/null @@ -1,3 +0,0 @@ -[doc8] - -max-line-length=99 diff --git a/pyproject.toml b/pyproject.toml index 9310aae..e87bb7a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -174,6 +174,10 @@ known-local-folder = ["deker"] known-third-party = ["deker_tools"] extra-standard-library = ["zoneinfo"] +[tool.doc8] +max-line-length=99 + + [build-system] requires = ["setuptools>=45", "setuptools_scm[toml]>=6.2"] From 7cde8bbcba0e1c632012144dbbaa7648f27e8329 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 19:21:46 +0600 Subject: [PATCH 03/79] doc8 added to pre-commit, config moved to pyproject --- .pre-commit-config.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 874f8b9..b4350c8 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -154,10 +154,10 @@ repos: - id: doc8 name: doc8 description: This hook runs doc8 for linting docs - entry: doc8 docs/deker + entry: doc8 docs/deker --config pyproject.toml language: python files: \.rst$ require_serial: true - args: [--config pyproject.toml] + always_run: true stages: - commit From de65d9f6e63fe936f46c2eb69f9c9fd3f421af96 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 20:03:46 +0600 Subject: [PATCH 04/79] tools page fix --- .github/workflows/github-actions.yml | 6 +++--- .pre-commit-config.yaml | 6 ++---- docs/deker/tools.rst | 3 +-- 3 files changed, 6 insertions(+), 9 deletions(-) diff --git a/.github/workflows/github-actions.yml b/.github/workflows/github-actions.yml index 1a762ba..c80c9da 100644 --- a/.github/workflows/github-actions.yml +++ b/.github/workflows/github-actions.yml @@ -66,7 +66,7 @@ jobs: black ./${{ env.PYTHON_PACKAGE_NAME }} flake8 ./${{ env.PYTHON_PACKAGE_NAME }} mypy ./${{ env.PYTHON_PACKAGE_NAME }} --install-types --non-interactive --config-file pyproject.toml - doc8 ./docs + doc8 ./docs/deker --config pyproject.toml env: PIP_DISABLE_PIP_VERSION_CHECK: 1 @@ -224,14 +224,14 @@ jobs: - name: Make Sphinx docs run: | source venv/bin/activate - cd ./docs + cd ./docs make html ls -la _build/html - name: Upload artifact uses: actions/upload-pages-artifact@v2 with: path: docs/_build/html - + publish_docs: needs: build_docs if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index b4350c8..4cbc1d4 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -153,11 +153,9 @@ repos: - id: doc8 name: doc8 - description: This hook runs doc8 for linting docs - entry: doc8 docs/deker --config pyproject.toml + entry: doc8 + files: docs/deker language: python - files: \.rst$ - require_serial: true always_run: true stages: - commit diff --git a/docs/deker/tools.rst b/docs/deker/tools.rst index 7730bfd..42866b9 100644 --- a/docs/deker/tools.rst +++ b/docs/deker/tools.rst @@ -6,7 +6,7 @@ Deker Tools is a collection of utility functions and classes designed to assist processing tasks. It consists of modules that handle data conversion, path validation, and slice manipulation. -.. attention:: This package is not considered to be part of Deker public API nad could significantly +.. attention:: This package is not considered to be part of Deker public API and can be significantly changed in future versions. For details please refer to the `Deker Tools`_ API documentation. @@ -68,4 +68,3 @@ default:: >>> get_utc(datetime.now()) 2023-07-26 15:42:05.539317+00:00 - From e6573843b6f580d8490c6039db36d2b4d38eaa11 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 20:07:50 +0600 Subject: [PATCH 05/79] tools page fix --- .pre-commit-config.yaml | 2 +- pyproject.toml | 3 ++- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 4cbc1d4..45d7faf 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -154,8 +154,8 @@ repos: - id: doc8 name: doc8 entry: doc8 - files: docs/deker language: python always_run: true + args: [--config=pyproject.toml] stages: - commit diff --git a/pyproject.toml b/pyproject.toml index e87bb7a..b41e033 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -175,7 +175,8 @@ known-third-party = ["deker_tools"] extra-standard-library = ["zoneinfo"] [tool.doc8] -max-line-length=99 +path = "docs/deker" +max-line-length = 99 [build-system] From 476795898cfeaf3e45dfdbf0856727b0de1a944f Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 20:08:53 +0600 Subject: [PATCH 06/79] tools page fix --- .pre-commit-config.yaml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 45d7faf..2f38590 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -153,9 +153,8 @@ repos: - id: doc8 name: doc8 - entry: doc8 + entry: doc8 --config=pyproject.toml language: python always_run: true - args: [--config=pyproject.toml] stages: - commit From 7769d7d174c946fca76bf716870c220886a2101b Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 20:09:50 +0600 Subject: [PATCH 07/79] tools page fix --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 2f38590..19bad54 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -153,7 +153,7 @@ repos: - id: doc8 name: doc8 - entry: doc8 --config=pyproject.toml + entry: doc8 --config=pyproject.toml docs/deker language: python always_run: true stages: From c9b874d6da9b0fd6300ec9646341d91613d62707 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 20:21:39 +0600 Subject: [PATCH 08/79] tools page fix --- .github/workflows/github-actions.yml | 2 +- pyproject.toml | 1 - 2 files changed, 1 insertion(+), 2 deletions(-) diff --git a/.github/workflows/github-actions.yml b/.github/workflows/github-actions.yml index c80c9da..437cb1d 100644 --- a/.github/workflows/github-actions.yml +++ b/.github/workflows/github-actions.yml @@ -66,7 +66,7 @@ jobs: black ./${{ env.PYTHON_PACKAGE_NAME }} flake8 ./${{ env.PYTHON_PACKAGE_NAME }} mypy ./${{ env.PYTHON_PACKAGE_NAME }} --install-types --non-interactive --config-file pyproject.toml - doc8 ./docs/deker --config pyproject.toml + doc8 --config pyproject.toml ./docs/deker env: PIP_DISABLE_PIP_VERSION_CHECK: 1 diff --git a/pyproject.toml b/pyproject.toml index b41e033..b2793ea 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -175,7 +175,6 @@ known-third-party = ["deker_tools"] extra-standard-library = ["zoneinfo"] [tool.doc8] -path = "docs/deker" max-line-length = 99 From 32df25723c355a9bd1cf1c00d5a945aa2385a1e7 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 22:24:24 +0600 Subject: [PATCH 09/79] CI actions refactor --- .github/{workflows => }/github-actions.yml | 5 +- .github/workflows/on_build.yml | 186 +++++++++++++++++++++ .github/workflows/on_push.yml | 143 ++++++++++++++++ requirements.txt | 1 + tox.ini | 38 +---- 5 files changed, 339 insertions(+), 34 deletions(-) rename .github/{workflows => }/github-actions.yml (98%) create mode 100644 .github/workflows/on_build.yml create mode 100644 .github/workflows/on_push.yml diff --git a/.github/workflows/github-actions.yml b/.github/github-actions.yml similarity index 98% rename from .github/workflows/github-actions.yml rename to .github/github-actions.yml index 437cb1d..0a9782f 100644 --- a/.github/workflows/github-actions.yml +++ b/.github/github-actions.yml @@ -2,13 +2,9 @@ name: pipeline on: push: - pull_request: env: PYTHON_IMAGE: 3.9 - DOCKER_IMAGE: docker:20.10.23 - PYTHON_PACKAGE_NAME: deker - DOCKER_REG_IMAGE: ${{ secrets.CI_REGISTRY_IMAGE }} jobs: setup: @@ -43,6 +39,7 @@ jobs: linters: needs: setup runs-on: ubuntu-latest + if: ${{ !startsWith(github.ref, 'refs/tags/v') }} steps: - name: Checkout code diff --git a/.github/workflows/on_build.yml b/.github/workflows/on_build.yml new file mode 100644 index 0000000..2044b1b --- /dev/null +++ b/.github/workflows/on_build.yml @@ -0,0 +1,186 @@ +name: build-pipeline + +on: + push: + - '**' + tags: + - v[1-9].[0-9].[0-9] + +env: + PYTHON_IMAGE: 3.9 + +jobs: + setup: + runs-on: ubuntu-latest + timeout-minutes: 60 + + steps: + - name: Checkout code + uses: actions/checkout@v2 + + - name: Set up Python + uses: actions/setup-python@v3 + with: + python-version: ${{ env.PYTHON_IMAGE }} + + - name: Install dependencies + run: | + pip install --upgrade pip + pip install virtualenv + virtualenv venv + source venv/bin/activate + pip install -r requirements_dev.txt + pip list + + - name: Cache virtual environment + uses: actions/cache@v2 + with: + path: venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + + tox_tests: + needs: setup + runs-on: ubuntu-latest + container: + image: ghcr.io/openweathermap/deker/deker-embedded/tox:latest + env: + PACKAGE_VERSION: ${{ github.REF_NAME }} + credentials: + username: ${{ github.actor }} + password: ${{ secrets.GITHUB_TOKEN }} + steps: + - name: Set python versions + run: pyenv global 3.9 3.10 3.11 + + - name: Checkout code + uses: actions/checkout@v2 + - name: Install tox + run: | + env + pip install tox + env: + PIP_DISABLE_PIP_VERSION_CHECK: 1 + - name: Run tox tests + run: | + env + tox + env: + PIP_DISABLE_PIP_VERSION_CHECK: 1 + PACKAGE_VERSION: ${{ github.REF_NAME }} + + build_docs: + needs: tox_tests + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + - name: Load virtual environment + uses: actions/cache@v2 + with: + path: venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + - name: Make Sphinx docs + run: | + source venv/bin/activate + doc8 --config pyproject.toml docs/deker + cd ./docs + make html + - name: Upload artifact + uses: actions/upload-pages-artifact@v2 + with: + path: docs/_build/html + + publish_docs: + needs: build_docs + runs-on: ubuntu-latest + permissions: + contents: read + pages: write + id-token: write + concurrency: + group: "pages" + cancel-in-progress: false + environment: + name: github-pages + url: ${{ steps.deployment.outputs.page_url }} + steps: + - name: Deploy to GitHub Pages + uses: actions/deploy-pages@v2 + with: + github_token: ${{ secrets.GITHUB_TOKEN }} + branch: gh-pages + force: true + directory: docs/_build/html + + build_wheels: + name: Build wheels on ${{ matrix.os }} + needs: tox_tests + if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') + runs-on: ${{ matrix.os }} + strategy: + matrix: + os: [ubuntu-22.04] + + steps: + - uses: actions/checkout@v3 + - name: Build wheels + run: | + pip wheel -w ./wheelhouse . + + + build_sdist: + needs: tox_tests + name: Build source distribution + if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + + - name: Build sdist + run: pipx run build --sdist + + - uses: actions/upload-artifact@v3 + with: + path: dist/*.tar.gz + + upload_test_pypi: + needs: [build_wheels, build_sdist] + runs-on: ubuntu-latest + permissions: + id-token: write + if: ${{ !endsWith(github.ref, '[0-9]') }} + environment: + name: testpypi + url: https://test.pypi.org/p/deker + + steps: + - uses: actions/download-artifact@v3 + with: + # unpacks default artifact into dist/ + # if `name: artifact` is omitted, the action will create extra parent dir + name: artifact + path: dist + + - name: Publish package distributions to PyPI + uses: pypa/gh-action-pypi-publish@release/v1 + with: + repository-url: https://test.pypi.org/legacy/ + + upload_pypi: + needs: [build_wheels, build_sdist] + runs-on: ubuntu-latest + permissions: + id-token: write + environment: + name: pypi + url: https://pypi.org/p/deker + + steps: + - uses: actions/download-artifact@v3 + with: + # unpacks default artifact into dist/ + # if `name: artifact` is omitted, the action will create extra parent dir + name: artifact + path: dist + + - name: Publish package distributions to PyPI + uses: pypa/gh-action-pypi-publish@release/v1 diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml new file mode 100644 index 0000000..a9649b6 --- /dev/null +++ b/.github/workflows/on_push.yml @@ -0,0 +1,143 @@ +name: push-pipeline + +on: + push: + +env: + PYTHON_IMAGE: 3.9 + +jobs: + setup: + runs-on: ubuntu-latest + timeout-minutes: 60 + + steps: + - name: Checkout code + uses: actions/checkout@v2 + + - name: Set up Python + uses: actions/setup-python@v3 + with: + python-version: ${{ env.PYTHON_IMAGE }} + + - name: Install dependencies + run: | + pip install --upgrade pip + pip install virtualenv + virtualenv venv + source venv/bin/activate + pip install -r requirements.txt + pip install -r requirements_dev.txt + pip list + + - name: Cache virtual environment + uses: actions/cache@v2 + with: + path: venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + + linters: + needs: setup + runs-on: ubuntu-latest + if: ${{ !startsWith(github.ref, 'refs/tags/v') }} + + steps: + - name: Checkout code + uses: actions/checkout@v2 + + - name: Set up Python + uses: actions/setup-python@v3 + with: + python-version: ${{ env.PYTHON_IMAGE }} + + - name: Load virtual environment + uses: actions/cache@v2 + with: + path: venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + + - name: Run linters and checks + run: | + source venv/bin/activate + isort ./${{ env.PYTHON_PACKAGE_NAME }} + black ./${{ env.PYTHON_PACKAGE_NAME }} + flake8 ./${{ env.PYTHON_PACKAGE_NAME }} + mypy ./${{ env.PYTHON_PACKAGE_NAME }} --install-types --non-interactive --config-file pyproject.toml + doc8 --config pyproject.toml ./docs/deker + env: + PIP_DISABLE_PIP_VERSION_CHECK: 1 + + - name: Save linter reports + if: always() + uses: actions/upload-artifact@v2 + with: + name: linter-reports + path: report.xml + + tests: + needs: setup + runs-on: ubuntu-latest + if: ${{ !startsWith(github.ref, 'refs/tags/v') }} + steps: + - name: Checkout code + uses: actions/checkout@v2 + + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: ${{ env.PYTHON_IMAGE }} + + - name: Load virtual environment + uses: actions/cache@v2 + with: + path: venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + + - name: Run shuffled tests + run: | + source venv/bin/activate + pytest --random-order --junitxml=tests.xml + env: + PIP_DISABLE_PIP_VERSION_CHECK: 1 + + - name: Save test reports + if: always() + uses: actions/upload-artifact@v2 + with: + name: test-reports + path: tests.xml + + coverage: + needs: setup + runs-on: ubuntu-latest + if: ${{ !startsWith(github.ref, 'refs/tags/v') }} + steps: + - name: Checkout code + uses: actions/checkout@v2 + + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: ${{ env.PYTHON_IMAGE }} + + - name: Load virtual environment + uses: actions/cache@v2 + with: + path: venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + + - name: Run coverage + run: | + source venv/bin/activate + coverage run -m pytest --junitxml=report.xml + coverage report + coverage xml + env: + PIP_DISABLE_PIP_VERSION_CHECK: 1 + + - name: Save coverage reports + if: always() + uses: actions/upload-artifact@v2 + with: + name: coverage-reports + path: coverage.xml diff --git a/requirements.txt b/requirements.txt index 1110404..10e225b 100644 --- a/requirements.txt +++ b/requirements.txt @@ -4,4 +4,5 @@ typing-extensions>=4.4.0 tqdm>=4.64.1 psutil>=5.9.5 +--extra-index-url https://test.pypi.org/simple/ deker-local-adapters==1.0.1b diff --git a/tox.ini b/tox.ini index da607d7..cd0ea6b 100644 --- a/tox.ini +++ b/tox.ini @@ -1,48 +1,26 @@ [tox] requires = tox>=4 -env_list = {py39,py310,py311}-lint, py{39,310,311}-test +env_list = py{39,310,311}-lint, py{39,310,311}-test -[testenv:{py39,py310,py311}-test] +[testenv:py{39,310,311}-test] description = run unit tests deps = - deepdiff==6.3.0 - pytest>=7 - pytest-sugar - pytest-mock==3.10.0 - xarray>=2023.5.0 + -r requirements.txt + -r requirements_dev.txt commands = pytest {posargs:tests} -set_env = - PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} - -[testenv:{py39,py310,py311}-lint] +[testenv:py{39,310,311}-lint] ignore_base_python_conflict = true description = run linters -deps = black==23.1.0 - coverage==7.1.0 - darglint==1.8.1 - flake8==5.0.4 - flake8-bugbear==23.1.20 - flake8-docstrings==1.7.0 - flake8-import-order==0.18.2 - flake8-pytest-style==1.7.0 - isort==5.12.0 - mypy==1.0.0 - mypy-extensions==1.0.0 - pep8-naming==0.13.3 - bandit==1.7.5 - ssort==0.11.6 - deepdiff==6.3.0 - xarray>=2023.5.0 +deps = + -r requirements.txt + -r requirements_dev.txt commands = isort {posargs:deker} black {posargs:deker} flake8 {posargs:deker} bandit -r {posargs:deker} -c pyproject.toml mypy {posargs:deker} --install-types --non-interactive --config-file pyproject.toml - -set_env = - PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} From 8787924742b66754bb511d279e7ffe308c440e6b Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 22:26:37 +0600 Subject: [PATCH 10/79] CI actions refactor build --- .github/workflows/on_build.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/on_build.yml b/.github/workflows/on_build.yml index 2044b1b..d37a156 100644 --- a/.github/workflows/on_build.yml +++ b/.github/workflows/on_build.yml @@ -2,7 +2,6 @@ name: build-pipeline on: push: - - '**' tags: - v[1-9].[0-9].[0-9] From e26fb56fdbfc542abe9a205c9132c4945b2d83de Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 22:27:48 +0600 Subject: [PATCH 11/79] CI actions refactor build --- .github/workflows/on_build.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/on_build.yml b/.github/workflows/on_build.yml index d37a156..4f6c61e 100644 --- a/.github/workflows/on_build.yml +++ b/.github/workflows/on_build.yml @@ -2,8 +2,8 @@ name: build-pipeline on: push: - tags: - - v[1-9].[0-9].[0-9] + tags: + - v[1-9].[0-9].[0-9] env: PYTHON_IMAGE: 3.9 From 8384d0b571d00c732a83a84a4172295c01f5dad7 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 22:31:23 +0600 Subject: [PATCH 12/79] CI actions refactor build --- .github/workflows/on_build.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/on_build.yml b/.github/workflows/on_build.yml index 4f6c61e..b7836d5 100644 --- a/.github/workflows/on_build.yml +++ b/.github/workflows/on_build.yml @@ -146,7 +146,7 @@ jobs: runs-on: ubuntu-latest permissions: id-token: write - if: ${{ !endsWith(github.ref, '[0-9]') }} + if: ${{ !endsWith(github.ref, 'v[1-9].[0-9].[0-9]') }} environment: name: testpypi url: https://test.pypi.org/p/deker From d72a4fb498cb250d6cdb95bd7ec82c9be14ab2a6 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 22:35:34 +0600 Subject: [PATCH 13/79] CI actions refactor build --- .github/workflows/on_build.yml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/.github/workflows/on_build.yml b/.github/workflows/on_build.yml index b7836d5..ad390d9 100644 --- a/.github/workflows/on_build.yml +++ b/.github/workflows/on_build.yml @@ -1,9 +1,8 @@ name: build-pipeline on: - push: - tags: - - v[1-9].[0-9].[0-9] + tags: + - v[1-9].[0-9].[0-9] env: PYTHON_IMAGE: 3.9 From 58bb494f68f9d8feea6158940cedb229581442ff Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 22:36:45 +0600 Subject: [PATCH 14/79] CI actions refactor build --- .github/workflows/on_build.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/on_build.yml b/.github/workflows/on_build.yml index ad390d9..2fb5441 100644 --- a/.github/workflows/on_build.yml +++ b/.github/workflows/on_build.yml @@ -2,7 +2,7 @@ name: build-pipeline on: tags: - - v[1-9].[0-9].[0-9] + - 'v[1-9].[0-9].[0-9]' env: PYTHON_IMAGE: 3.9 From 9d4ed082e7dcf882a7b032be1869deab70f68b36 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 22:40:34 +0600 Subject: [PATCH 15/79] CI actions refactor build --- .github/workflows/on_build.yml | 5 +++-- .github/workflows/on_push.yml | 2 ++ 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/.github/workflows/on_build.yml b/.github/workflows/on_build.yml index 2fb5441..b7836d5 100644 --- a/.github/workflows/on_build.yml +++ b/.github/workflows/on_build.yml @@ -1,8 +1,9 @@ name: build-pipeline on: - tags: - - 'v[1-9].[0-9].[0-9]' + push: + tags: + - v[1-9].[0-9].[0-9] env: PYTHON_IMAGE: 3.9 diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index a9649b6..945d898 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -2,6 +2,8 @@ name: push-pipeline on: push: + tags-ignore: + - '**' env: PYTHON_IMAGE: 3.9 From 27e446ab88c887fa763bc4df928544e16ef25719 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 22:47:32 +0600 Subject: [PATCH 16/79] CI actions refactor --- .github/workflows/on_push.yml | 8 ++------ .github/workflows/{on_build.yml => on_release.yml} | 4 ++-- 2 files changed, 4 insertions(+), 8 deletions(-) rename .github/workflows/{on_build.yml => on_release.yml} (98%) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 945d898..5a6db40 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -2,8 +2,8 @@ name: push-pipeline on: push: - tags-ignore: - - '**' + branches-ignore: + - 'refs/tags/v' env: PYTHON_IMAGE: 3.9 @@ -41,8 +41,6 @@ jobs: linters: needs: setup runs-on: ubuntu-latest - if: ${{ !startsWith(github.ref, 'refs/tags/v') }} - steps: - name: Checkout code uses: actions/checkout@v2 @@ -79,7 +77,6 @@ jobs: tests: needs: setup runs-on: ubuntu-latest - if: ${{ !startsWith(github.ref, 'refs/tags/v') }} steps: - name: Checkout code uses: actions/checkout@v2 @@ -112,7 +109,6 @@ jobs: coverage: needs: setup runs-on: ubuntu-latest - if: ${{ !startsWith(github.ref, 'refs/tags/v') }} steps: - name: Checkout code uses: actions/checkout@v2 diff --git a/.github/workflows/on_build.yml b/.github/workflows/on_release.yml similarity index 98% rename from .github/workflows/on_build.yml rename to .github/workflows/on_release.yml index b7836d5..e091fe7 100644 --- a/.github/workflows/on_build.yml +++ b/.github/workflows/on_release.yml @@ -2,8 +2,8 @@ name: build-pipeline on: push: - tags: - - v[1-9].[0-9].[0-9] + branches: + - 'refs/tags/v[1-9].[0-9].[0-9]' env: PYTHON_IMAGE: 3.9 From 13a2414a87e31b1d0e69c2f02c8d6bf49c2f3845 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 23:38:20 +0600 Subject: [PATCH 17/79] CI actions refactor --- .github/workflows/on_release.yml | 30 ++-------------- .github/workflows/on_test_release.yml | 49 +++++++++++++++++++++++++++ 2 files changed, 51 insertions(+), 28 deletions(-) create mode 100644 .github/workflows/on_test_release.yml diff --git a/.github/workflows/on_release.yml b/.github/workflows/on_release.yml index e091fe7..4a64327 100644 --- a/.github/workflows/on_release.yml +++ b/.github/workflows/on_release.yml @@ -2,8 +2,8 @@ name: build-pipeline on: push: - branches: - - 'refs/tags/v[1-9].[0-9].[0-9]' + tags: + - 'v[1-9]+.[0-9]+.[0-9]+' env: PYTHON_IMAGE: 3.9 @@ -113,7 +113,6 @@ jobs: build_wheels: name: Build wheels on ${{ matrix.os }} needs: tox_tests - if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') runs-on: ${{ matrix.os }} strategy: matrix: @@ -125,11 +124,9 @@ jobs: run: | pip wheel -w ./wheelhouse . - build_sdist: needs: tox_tests name: Build source distribution - if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 @@ -141,29 +138,6 @@ jobs: with: path: dist/*.tar.gz - upload_test_pypi: - needs: [build_wheels, build_sdist] - runs-on: ubuntu-latest - permissions: - id-token: write - if: ${{ !endsWith(github.ref, 'v[1-9].[0-9].[0-9]') }} - environment: - name: testpypi - url: https://test.pypi.org/p/deker - - steps: - - uses: actions/download-artifact@v3 - with: - # unpacks default artifact into dist/ - # if `name: artifact` is omitted, the action will create extra parent dir - name: artifact - path: dist - - - name: Publish package distributions to PyPI - uses: pypa/gh-action-pypi-publish@release/v1 - with: - repository-url: https://test.pypi.org/legacy/ - upload_pypi: needs: [build_wheels, build_sdist] runs-on: ubuntu-latest diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml new file mode 100644 index 0000000..d786772 --- /dev/null +++ b/.github/workflows/on_test_release.yml @@ -0,0 +1,49 @@ +name: test-build-pipeline + +on: + push: + tags: + - 'v*' + tags-ignore: + - 'v[1-9]+.[0-9]+.[0-9]+' + +env: + PYTHON_IMAGE: 3.9 + +jobs: + build_sdist: + needs: tox_tests + name: Build source distribution + if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + + - name: Build sdist + run: pipx run build --sdist + + - uses: actions/upload-artifact@v3 + with: + path: dist/*.tar.gz + + upload_test_pypi: + needs: [build_wheels, build_sdist] + runs-on: ubuntu-latest + permissions: + id-token: write + environment: + name: testpypi + url: https://test.pypi.org/p/deker + + steps: + - uses: actions/download-artifact@v3 + with: + # unpacks default artifact into dist/ + # if `name: artifact` is omitted, the action will create extra parent dir + name: artifact + path: dist + + - name: Publish package distributions to PyPI + uses: pypa/gh-action-pypi-publish@release/v1 + with: + repository-url: https://test.pypi.org/legacy/ From d674d047aa087dce9d5fbab5a6221076737718fa Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 23:40:57 +0600 Subject: [PATCH 18/79] CI actions refactor --- .github/workflows/on_test_release.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index d786772..ad9055f 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -4,8 +4,7 @@ on: push: tags: - 'v*' - tags-ignore: - - 'v[1-9]+.[0-9]+.[0-9]+' + - '!v[1-9]+.[0-9]+.[0-9]+' env: PYTHON_IMAGE: 3.9 From d2f9e86b84937561431cb54ce33ae70a68f7af8c Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Wed, 9 Aug 2023 23:43:52 +0600 Subject: [PATCH 19/79] CI actions refactor --- .github/workflows/on_test_release.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index ad9055f..f94a948 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -11,7 +11,6 @@ env: jobs: build_sdist: - needs: tox_tests name: Build source distribution if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') runs-on: ubuntu-latest @@ -26,7 +25,7 @@ jobs: path: dist/*.tar.gz upload_test_pypi: - needs: [build_wheels, build_sdist] + needs: build_sdist runs-on: ubuntu-latest permissions: id-token: write From 7f54cf12a4b1d9bb999881d4c1f124ecd0398a2a Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 00:34:58 +0600 Subject: [PATCH 20/79] test_build --- .github/workflows/on_test_release.yml | 52 ++++++++++++++++++++++++++- 1 file changed, 51 insertions(+), 1 deletion(-) diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index f94a948..0f5e62d 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -10,9 +10,59 @@ env: PYTHON_IMAGE: 3.9 jobs: + tox_tests: + runs-on: ubuntu-latest + container: + image: ghcr.io/openweathermap/deker/deker-embedded/tox:latest + env: + PACKAGE_VERSION: ${{ github.REF_NAME }} + credentials: + username: ${{ github.actor }} + password: ${{ secrets.GITHUB_TOKEN }} + steps: + - name: Set python versions + run: pyenv global 3.9 3.10 3.11 + + - name: Checkout code + uses: actions/checkout@v2 + - name: Install tox + run: | + env + pip install tox + env: + PIP_DISABLE_PIP_VERSION_CHECK: 1 + - name: Run tox tests + run: | + env + tox + env: + PIP_DISABLE_PIP_VERSION_CHECK: 1 + PACKAGE_VERSION: ${{ github.REF_NAME }} + + build_docs: + needs: tox_tests + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + - name: Load virtual environment + uses: actions/cache@v2 + with: + path: venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + - name: Make Sphinx docs + run: | + source venv/bin/activate + doc8 --config pyproject.toml docs/deker + cd ./docs + make html + - name: Upload artifact + uses: actions/upload-pages-artifact@v2 + with: + path: docs/_build/html + + build_sdist: name: Build source distribution - if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 From 7e108b733fe376b1e2ef14888d989123cf8ddf32 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 14:15:08 +0600 Subject: [PATCH 21/79] changelog --- .github/workflows/changelog.yml | 36 +++++++++++++++ .../configs/changelog-ci-config.json | 46 +++++++++++++++++++ .github/workflows/on_test_release.yml | 8 ++++ docs/conf.py | 38 ++++++--------- 4 files changed, 104 insertions(+), 24 deletions(-) create mode 100644 .github/workflows/changelog.yml create mode 100644 .github/workflows/configs/changelog-ci-config.json diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml new file mode 100644 index 0000000..31ff9de --- /dev/null +++ b/.github/workflows/changelog.yml @@ -0,0 +1,36 @@ +name: changelog + +on: + workflow_dispatch: +jobs: + build: + runs-on: ubuntu-latest + + steps: + # Checks-out your repository + - uses: actions/checkout@v2 + + - name: Run Changelog CI + uses: saadmk11/changelog-ci@v1.1.2 + with: + # Optional, you can provide any name for your changelog file, + # We currently support Markdown (.md) and reStructuredText (.rst) files + # defaults to `CHANGELOG.md` if not provided. + changelog_filename: CHANGELOG.rst + # Optional, only required when you want more customization + # e.g: group your changelog by labels with custom titles, + # different version prefix, pull request title and version number regex etc. + # config file can be in JSON or YAML format. + config_file: configs/changelog-ci-config.json + # Optional, This will be used to configure git + # defaults to `github-actions[bot]` if not provided. + committer_username: 'OpenWeather' + committer_email: 'info@openweathermap.org' + # Optional, only required when you want to run Changelog CI + # on an event other than `pull_request` event. + # In this example `release_version` is fetched from `workflow_dispatch` events input. + # You can use any other method to fetch the release version + # such as environment variable or from output of another action + release_version: ${{ github.event.inputs.release_version }} + # Optional + github_token: ${{ secrets.GITHUB_TOKEN }} diff --git a/.github/workflows/configs/changelog-ci-config.json b/.github/workflows/configs/changelog-ci-config.json new file mode 100644 index 0000000..67e2449 --- /dev/null +++ b/.github/workflows/configs/changelog-ci-config.json @@ -0,0 +1,46 @@ +{ + "changelog_type": "commit_message", + "comment_changelog": true, + "commit_changelog": true, + "exclude_labels": [ + "bot", + "dependabot", + "ci" + ], + "group_config": [ + { + "labels": [ + "bug", + "bugfix", + "fix" + ], + "title": "Bug Fixes" + }, + { + "labels": [ + "improvements", + "enhancement" + ], + "title": "Code Improvements" + }, + { + "labels": [ + "feature" + ], + "title": "New Features" + }, + { + "labels": [ + "docs", + "documentation", + "doc" + ], + "title": "Documentation Updates" + } + ], + "header_prefix": "Version:", + "include_unlabeled_changes": true, + "pull_request_title_regex": "^Release", + "unlabeled_group_title": "Unlabeled Changes", + "version_regex": "v[0-9]+[.][0-9]+[.][0-9]+" +} diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index 0f5e62d..47ea44f 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -10,6 +10,14 @@ env: PYTHON_IMAGE: 3.9 jobs: + changelog: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v2 + - name: Run Changelog CI + uses: saadmk11/changelog-ci@v1.1.2 + + tox_tests: runs-on: ubuntu-latest container: diff --git a/docs/conf.py b/docs/conf.py index 9493b78..6a27f67 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -10,10 +10,6 @@ import sys -project = "Deker" -copyright = "2023, OpenWeather" -author = "OpenWeather" - # Add support for auto-doc # Ensure that sanic is present in the path, to allow sphinx-apidoc to @@ -22,6 +18,18 @@ sys.path.insert(0, os.path.abspath("..")) +project = "Deker" +copyright = "2023, OpenWeather" +author = "OpenWeather" +# The version info for the project you're documenting, acts as replacement for +# |version| and |release|, also used in various other places throughout the +# built documents. +# +# The short X.Y version. +version = "v1.1.0" +# The full version, including alpha/beta/rc tags. +release = version + # -- General configuration ------------------------------------------------ extensions = [ @@ -39,18 +47,6 @@ # The master toctree document. master_doc = "index" -# web page tab logo -# html_logo = "deker/images/logo.png" - -# The version info for the project you're documenting, acts as replacement for -# |version| and |release|, also used in various other places throughout the -# built documents. -# -# The short X.Y version. -version = "v1.0.0" -# The full version, including alpha/beta/rc tags. -release = version - # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # This is also used if you do content translation via gettext catalogs. @@ -77,14 +73,10 @@ # a list of builtin themes. html_theme = "sphinx_rtd_theme" html_theme_options = { - # "analytics_id": "G-XXXXXXXXXX", # Provided by Google in your dashboard - # "analytics_anonymize_ip": False, - # "logo_only": False, "display_version": True, "prev_next_buttons_location": "bottom", "style_external_links": True, "vcs_pageview_mode": "", - # "style_nav_header_background": "light-blue", # Toc options "collapse_navigation": False, "sticky_navigation": True, @@ -92,11 +84,13 @@ "includehidden": True, "titles_only": False, } + # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". # html_static_path = ["_static"] # html_css_files = ["custom.css"] + # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. @@ -106,11 +100,7 @@ suppress_warnings = ["image.nonlocal_uri"] - autodoc_typehints = "description" autodoc_default_options = { "member-order": "groupwise", } -# intersphinx_mapping = { -# "deker": ("http://de1.owm.io:10002", None), -# } From da2d862b295e3f2f8db82187b8586bf809225738 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 14:17:15 +0600 Subject: [PATCH 22/79] changelog --- .github/workflows/changelog.yml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml index 31ff9de..af6452b 100644 --- a/.github/workflows/changelog.yml +++ b/.github/workflows/changelog.yml @@ -1,9 +1,11 @@ name: changelog on: + push: workflow_dispatch: + jobs: - build: + changelog: runs-on: ubuntu-latest steps: From 38749356bcf891783e17ffaf642bbbb5680900c8 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov <64586748+SerGeRybakov@users.noreply.github.com> Date: Thu, 10 Aug 2023 14:23:16 +0600 Subject: [PATCH 23/79] Update changelog.yml --- .github/workflows/changelog.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml index af6452b..f143041 100644 --- a/.github/workflows/changelog.yml +++ b/.github/workflows/changelog.yml @@ -11,6 +11,9 @@ jobs: steps: # Checks-out your repository - uses: actions/checkout@v2 + + - name: check + run: ls - name: Run Changelog CI uses: saadmk11/changelog-ci@v1.1.2 @@ -23,7 +26,7 @@ jobs: # e.g: group your changelog by labels with custom titles, # different version prefix, pull request title and version number regex etc. # config file can be in JSON or YAML format. - config_file: configs/changelog-ci-config.json + config_file: .github/workflows/configs/changelog-ci-config.json # Optional, This will be used to configure git # defaults to `github-actions[bot]` if not provided. committer_username: 'OpenWeather' From 5bced216861d0029f6b8af1e8f16a89cf9f47ad5 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 14:25:53 +0600 Subject: [PATCH 24/79] changelog --- .github/workflows/changelog.yml | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml index f143041..a2f79ba 100644 --- a/.github/workflows/changelog.yml +++ b/.github/workflows/changelog.yml @@ -11,7 +11,7 @@ jobs: steps: # Checks-out your repository - uses: actions/checkout@v2 - + - name: check run: ls @@ -29,13 +29,13 @@ jobs: config_file: .github/workflows/configs/changelog-ci-config.json # Optional, This will be used to configure git # defaults to `github-actions[bot]` if not provided. - committer_username: 'OpenWeather' - committer_email: 'info@openweathermap.org' +# committer_username: 'OpenWeather' +# committer_email: 'info@openweathermap.org' # Optional, only required when you want to run Changelog CI # on an event other than `pull_request` event. # In this example `release_version` is fetched from `workflow_dispatch` events input. # You can use any other method to fetch the release version # such as environment variable or from output of another action - release_version: ${{ github.event.inputs.release_version }} +# release_version: ${{ github.event.inputs.release_version }} # Optional github_token: ${{ secrets.GITHUB_TOKEN }} From 71718e84e8b4ea40a7fe018ac91ce257ebcf5818 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 14:27:54 +0600 Subject: [PATCH 25/79] changelog --- .github/workflows/changelog.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml index a2f79ba..5392d15 100644 --- a/.github/workflows/changelog.yml +++ b/.github/workflows/changelog.yml @@ -37,5 +37,6 @@ jobs: # You can use any other method to fetch the release version # such as environment variable or from output of another action # release_version: ${{ github.event.inputs.release_version }} + release_version: v1.1.0 # Optional github_token: ${{ secrets.GITHUB_TOKEN }} From 045b5023033cd71de0671c41882a203e98280373 Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 11:26:28 +0200 Subject: [PATCH 26/79] testing poetry builds --- .github/workflows/on_push.yml | 31 +++--- .github/workflows/on_release.yml | 6 +- .github/workflows/on_test_release.yml | 15 ++- pyproject.toml => oldpyproject.toml | 135 +++++++++++++++++--------- requirements.txt | 8 -- requirements_dev.txt | 30 ------ tox.ini | 38 ++++++-- 7 files changed, 147 insertions(+), 116 deletions(-) rename pyproject.toml => oldpyproject.toml (59%) delete mode 100644 requirements.txt delete mode 100644 requirements_dev.txt diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 5a6db40..0e35b2a 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -24,19 +24,14 @@ jobs: - name: Install dependencies run: | - pip install --upgrade pip - pip install virtualenv - virtualenv venv - source venv/bin/activate - pip install -r requirements.txt - pip install -r requirements_dev.txt - pip list + pipx install poetry + poetry install --without docs - name: Cache virtual environment uses: actions/cache@v2 with: - path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + path: .venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} linters: needs: setup @@ -53,12 +48,12 @@ jobs: - name: Load virtual environment uses: actions/cache@v2 with: - path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + path: .venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Run linters and checks run: | - source venv/bin/activate + source .venv/bin/activate isort ./${{ env.PYTHON_PACKAGE_NAME }} black ./${{ env.PYTHON_PACKAGE_NAME }} flake8 ./${{ env.PYTHON_PACKAGE_NAME }} @@ -89,12 +84,12 @@ jobs: - name: Load virtual environment uses: actions/cache@v2 with: - path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + path: .venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Run shuffled tests run: | - source venv/bin/activate + source .venv/bin/activate pytest --random-order --junitxml=tests.xml env: PIP_DISABLE_PIP_VERSION_CHECK: 1 @@ -121,12 +116,12 @@ jobs: - name: Load virtual environment uses: actions/cache@v2 with: - path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + path: .venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Run coverage run: | - source venv/bin/activate + source .venv/bin/activate coverage run -m pytest --junitxml=report.xml coverage report coverage xml diff --git a/.github/workflows/on_release.yml b/.github/workflows/on_release.yml index 4a64327..0e09bfb 100644 --- a/.github/workflows/on_release.yml +++ b/.github/workflows/on_release.yml @@ -132,14 +132,16 @@ jobs: - uses: actions/checkout@v3 - name: Build sdist - run: pipx run build --sdist + run: | + pipx install poetry + poetry build -f sdist - uses: actions/upload-artifact@v3 with: path: dist/*.tar.gz upload_pypi: - needs: [build_wheels, build_sdist] + needs: [build_sdist] runs-on: ubuntu-latest permissions: id-token: write diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index 0f5e62d..08dffe6 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -25,14 +25,17 @@ jobs: - name: Checkout code uses: actions/checkout@v2 - - name: Install tox + - name: Install tools run: | env - pip install tox + pipx install tox poetry env: PIP_DISABLE_PIP_VERSION_CHECK: 1 + - name: Make requirements file + run: poetry export --without-hashes > requirements.txt - name: Run tox tests run: | + export PIP_EXTRA_INDEX_URL=https://test.pypi.org/simple env tox env: @@ -48,10 +51,10 @@ jobs: uses: actions/cache@v2 with: path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Make Sphinx docs run: | - source venv/bin/activate + source .venv/bin/activate doc8 --config pyproject.toml docs/deker cd ./docs make html @@ -68,7 +71,9 @@ jobs: - uses: actions/checkout@v3 - name: Build sdist - run: pipx run build --sdist + run: | + pipx install poetry + poetry build -f sdist - uses: actions/upload-artifact@v3 with: diff --git a/pyproject.toml b/oldpyproject.toml similarity index 59% rename from pyproject.toml rename to oldpyproject.toml index b2793ea..c185e26 100644 --- a/pyproject.toml +++ b/oldpyproject.toml @@ -86,31 +86,31 @@ ignore = [ "BLE001", "DTZ004", "FIX002", - "C901", # Too complex, refactor files with this error. + "C901", # Too complex, refactor files with this error. "SLF001", "ANN401", "G004", "A003", "TD003", "TD002", - "DTZ003", # .utcnow() is not allowed - "DTZ005", # date time without tz - "DTZ006", # date time without tz - "FA100", # __future__ annotations + "DTZ003", # .utcnow() is not allowed + "DTZ005", # date time without tz + "DTZ006", # date time without tz + "FA100", # __future__ annotations "TRY301", - "PLR0913", # Number of arguments + "PLR0913", # Number of arguments "PERF401", "RUF012", "PLR0912", # Too many branches, - "FBT001", # Boolean positional arg - "FBT002", # Boolean default value + "FBT001", # Boolean positional arg + "FBT002", # Boolean default value "D401", "COM812", "EM101", - "UP006", # Tuple[..] -> tuple[..] - "UP035", # Tuple[..] -> tuple[..] - "UP007", # X | Y instead of Union - "UP037", # Quotes in annotations + "UP006", # Tuple[..] -> tuple[..] + "UP035", # Tuple[..] -> tuple[..] + "UP007", # X | Y instead of Union + "UP037", # Quotes in annotations "RET504", "PIE790", "ERA001", @@ -144,7 +144,7 @@ exclude = [ "PERF203" # Performance overhead ] "deker/locks.py" = [ - "PERF203",# Performance overhead + "PERF203", # Performance overhead "PTH123", "SIM115" ] @@ -152,7 +152,7 @@ exclude = [ "deker/tools/path.py" = ["S324"] "deker/validators.py" = ["C901", "PLR0912"] "deker/dimensions.py" = ["PLR0915"] # Too many statements -"deker/types/enums.py" = ["A003","A002"] +"deker/types/enums.py" = ["A003", "A002"] "deker/types/shell.py" = ["D205", "D400"] "deker/ABC/base_subset.py" = ["PLW2901"] # overwritten by assignment "deker/ABC/base_array.py" = ["PLW2901"] # overwritten by assignment @@ -181,34 +181,34 @@ max-line-length = 99 [build-system] requires = ["setuptools>=45", "setuptools_scm[toml]>=6.2"] -[project] -name = "deker" -requires-python = ">=3.9" -dynamic = ["version", "readme", "dependencies"] -authors = [ - {name = "OpenWeather", email = "info@openweathermap.org"}, -] -maintainers = [ - {name = "OpenWeather", email = "info@openweathermap.org"}, -] -description = "Multidimensional arrays storage engine" -license = {text = "GPL-3.0-only"} -classifiers = [ - "Development Status :: 4 - Beta", - "Intended Audience :: Developers", - "Intended Audience :: Information Technology", - "Intended Audience :: Science/Research", - "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", - "Topic :: Software Development :: Libraries :: Python Modules", - "Operating System :: Unix", - "Operating System :: POSIX :: Linux", - "Operating System :: MacOS :: MacOS X", - "Programming Language :: Python", - "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.9", - "Programming Language :: Python :: 3.10", - "Programming Language :: Python :: 3.11", -] +#[project] +#name = "deker" +#requires-python = ">=3.9" +#dynamic = ["version", "readme", "dependencies"] +#authors = [ +# { name = "OpenWeather", email = "info@openweathermap.org" }, +#] +#maintainers = [ +# { name = "OpenWeather", email = "info@openweathermap.org" }, +#] +#description = "Multidimensional arrays storage engine" +#license = { text = "GPL-3.0-only" } +#classifiers = [ +# "Development Status :: 4 - Beta", +# "Intended Audience :: Developers", +# "Intended Audience :: Information Technology", +# "Intended Audience :: Science/Research", +# "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", +# "Topic :: Software Development :: Libraries :: Python Modules", +# "Operating System :: Unix", +# "Operating System :: POSIX :: Linux", +# "Operating System :: MacOS :: MacOS X", +# "Programming Language :: Python", +# "Programming Language :: Python :: 3", +# "Programming Language :: Python :: 3.9", +# "Programming Language :: Python :: 3.10", +# "Programming Language :: Python :: 3.11", +#] [project.optional-dependencies] xarray = ["xarray>=2023.5.0"] @@ -218,11 +218,56 @@ xarray = ["xarray>=2023.5.0"] 'Repository' = 'https://github.com/openweathermap/deker' [tool.setuptools.dynamic] -readme = {file = ["README.md"], content-type='text/markdown'} -dependencies = {file = ["requirements.txt"]} +readme = { file = ["README.md"], content-type = 'text/markdown' } +dependencies = { file = ["requirements.txt"] } [tool.setuptools] packages = ["deker"] -license-files=["LICENSE"] +license-files = ["LICENSE"] [tool.setuptools_scm] + +[tool.poetry.dependencies] +numpy = "^1.18" +attrs = "^23.1.0" +typing-extensions = "^4.4.0" +tqdm = "^4.64.1" +psutil = "^5.9.5" +deker-local-adapters = { version = "1.0.1b", source = "test" } + +[tool.poetry.group.dev.dependencies] +black = "23.1.0" +coverage = "7.1.0" +darglint = "1.8.1" +flake8 = "5.0.4" +flake8-bugbear = "23.1.20" +flake8-docstrings = "1.7.0" +flake8-import-order = "0.18.2" +flake8-pytest-style = "1.7.0" +isort = "5.12.0" +mypy = "1.0.0" +mypy-extensions = "1.0.0" +pep8-naming = "0.13.3" +pre-commit = "3.0.4" +pycln = "2.1.3" +pytest = "7.2.1" +pytest-cov = "4.0.0" +pytest-sugar = "0.9.6" +pytest-random-order = "1.1.0" +ssort = "0.11.6" +deepdiff = "6.3.0" +pytest-mock = "3.10.0" +xarray = "^2023.5.0" +bandit = "1.7.5" +tox = "4.6.3" + +[tool.poetry.group.docs.dependencies] +docutils = "0.17" +m2r2 = "0.3.2" +sphinx-rtd-theme = "1.2.2" +enum_tools = "0.10.0" +sphinx_toolbox = "3.5.0" +doc8 = "0.11.2" + +[too.poetry] +name = "deker" diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 10e225b..0000000 --- a/requirements.txt +++ /dev/null @@ -1,8 +0,0 @@ -numpy>=1.18 -attrs>=23.1.0 -typing-extensions>=4.4.0 -tqdm>=4.64.1 -psutil>=5.9.5 - ---extra-index-url https://test.pypi.org/simple/ -deker-local-adapters==1.0.1b diff --git a/requirements_dev.txt b/requirements_dev.txt deleted file mode 100644 index f565277..0000000 --- a/requirements_dev.txt +++ /dev/null @@ -1,30 +0,0 @@ -black==23.1.0 -coverage==7.1.0 -darglint==1.8.1 -flake8==5.0.4 # do not upgrade to 6.0.0! -flake8-bugbear==23.1.20 -flake8-docstrings==1.7.0 -flake8-import-order==0.18.2 -flake8-pytest-style==1.7.0 -isort==5.12.0 -mypy==1.0.0 -mypy-extensions==1.0.0 -pep8-naming==0.13.3 -pre-commit==3.0.4 -pycln==2.1.3 -pytest==7.2.1 -pytest-cov==4.0.0 -pytest-sugar==0.9.6 -pytest-random-order==1.1.0 -ssort==0.11.6 -deepdiff==6.3.0 -pytest-mock==3.10.0 -xarray>=2023.5.0 -bandit==1.7.5 -tox==4.6.3 -docutils==0.17 -m2r2==0.3.2 -sphinx-rtd-theme==1.2.2 -enum_tools==0.10.0 -sphinx_toolbox==3.5.0 -doc8==0.11.2 diff --git a/tox.ini b/tox.ini index cd0ea6b..da607d7 100644 --- a/tox.ini +++ b/tox.ini @@ -1,26 +1,48 @@ [tox] requires = tox>=4 -env_list = py{39,310,311}-lint, py{39,310,311}-test +env_list = {py39,py310,py311}-lint, py{39,310,311}-test -[testenv:py{39,310,311}-test] +[testenv:{py39,py310,py311}-test] description = run unit tests deps = - -r requirements.txt - -r requirements_dev.txt + deepdiff==6.3.0 + pytest>=7 + pytest-sugar + pytest-mock==3.10.0 + xarray>=2023.5.0 commands = pytest {posargs:tests} -[testenv:py{39,310,311}-lint] +set_env = + PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} + +[testenv:{py39,py310,py311}-lint] ignore_base_python_conflict = true description = run linters -deps = - -r requirements.txt - -r requirements_dev.txt +deps = black==23.1.0 + coverage==7.1.0 + darglint==1.8.1 + flake8==5.0.4 + flake8-bugbear==23.1.20 + flake8-docstrings==1.7.0 + flake8-import-order==0.18.2 + flake8-pytest-style==1.7.0 + isort==5.12.0 + mypy==1.0.0 + mypy-extensions==1.0.0 + pep8-naming==0.13.3 + bandit==1.7.5 + ssort==0.11.6 + deepdiff==6.3.0 + xarray>=2023.5.0 commands = isort {posargs:deker} black {posargs:deker} flake8 {posargs:deker} bandit -r {posargs:deker} -c pyproject.toml mypy {posargs:deker} --install-types --non-interactive --config-file pyproject.toml + +set_env = + PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} From b7949046618247224c836ebac781d22ff18dbe93 Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 11:30:33 +0200 Subject: [PATCH 27/79] testing poetry builds --- poetry.lock | 2460 +++++++++++++++++++++++++++ oldpyproject.toml => pyproject.toml | 179 +- 2 files changed, 2544 insertions(+), 95 deletions(-) create mode 100644 poetry.lock rename oldpyproject.toml => pyproject.toml (74%) diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..3e82b89 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,2460 @@ +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. + +[[package]] +name = "alabaster" +version = "0.7.13" +description = "A configurable sidebar-enabled Sphinx theme" +optional = false +python-versions = ">=3.6" +files = [ + {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"}, + {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"}, +] + +[[package]] +name = "apeye" +version = "1.4.0" +description = "Handy tools for working with URLs and APIs." +optional = false +python-versions = ">=3.6.1" +files = [ + {file = "apeye-1.4.0-py3-none-any.whl", hash = "sha256:32f10f5629c39a0d2a4bc00b16827b43b912c56510395329cb4cc823954ec2be"}, + {file = "apeye-1.4.0.tar.gz", hash = "sha256:db616f14f1e7c09c5ff76230b6a78ebada6e34bed80596bbb9f1146d94107cdb"}, +] + +[package.dependencies] +apeye-core = ">=1.0.0b2" +domdf-python-tools = ">=2.6.0" +platformdirs = ">=2.3.0" +requests = ">=2.24.0" + +[package.extras] +all = ["cachecontrol[filecache] (>=0.12.6)", "lockfile (>=0.12.2)"] +limiter = ["cachecontrol[filecache] (>=0.12.6)", "lockfile (>=0.12.2)"] + +[[package]] +name = "apeye-core" +version = "1.1.4" +description = "Core (offline) functionality for the apeye library." +optional = false +python-versions = ">=3.6.1" +files = [ + {file = "apeye_core-1.1.4-py3-none-any.whl", hash = "sha256:084bc696448d3ac428fece41c1f2eb08fa9d9ce1d1b2f4d43187e3def4528a60"}, + {file = "apeye_core-1.1.4.tar.gz", hash = "sha256:72bb89fed3baa647cb81aa28e1d851787edcbf9573853b5d2b5f87c02f50eaf5"}, +] + +[package.dependencies] +domdf-python-tools = ">=2.6.0" +idna = ">=2.5" + 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files" +optional = false +python-versions = ">=3.8" +files = [ + {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"}, + {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"}, +] + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] + +[metadata] +lock-version = "2.0" +python-versions = "^3.9" +content-hash = "81473ef02313750389fd21db7f276de438f96f279fd52609b1f33bb73831dc81" diff --git a/oldpyproject.toml b/pyproject.toml similarity index 74% rename from oldpyproject.toml rename to pyproject.toml index c185e26..bcde110 100644 --- a/oldpyproject.toml +++ b/pyproject.toml @@ -1,4 +1,87 @@ -# https://black.readthedocs.io/en/stable/ +[tool.poetry] +name = "deker" +version = "0.1.0" +description = "Multidimensional arrays storage engine" +authors = ["OpenWeather "] +license = "GPL-3.0-only" +readme = "README.md" +classifiers = [ + "Development Status :: 4 - Beta", + "Intended Audience :: Developers", + "Intended Audience :: Information Technology", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", + "Topic :: Software Development :: Libraries :: Python Modules", + "Operating System :: Unix", + "Operating System :: POSIX :: Linux", + "Operating System :: MacOS :: MacOS X", + "Programming Language :: Python", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.9", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", +] +documentation = 'https://docs.deker.io/' +homepage = 'https://deker.io/' +repository = 'https://github.com/openweathermap/deker' + +[tool.poetry.dependencies] +python = "^3.9" +numpy = "^1.18" +attrs = "^23.1.0" +typing-extensions = "^4.4.0" +tqdm = "^4.64.1" +psutil = "^5.9.5" +deker-local-adapters = { version = "1.0.1b", source = "testpypi" } + + +[tool.poetry.group.dev.dependencies] +black = "23.1.0" +coverage = "7.1.0" +darglint = "1.8.1" +flake8 = "5.0.4" +flake8-bugbear = "23.1.20" +flake8-docstrings = "1.7.0" +flake8-import-order = "0.18.2" +flake8-pytest-style = "1.7.0" +isort = "5.12.0" +mypy = "1.0.0" +mypy-extensions = "1.0.0" +pep8-naming = "0.13.3" +pre-commit = "3.0.4" +pycln = "2.1.3" +pytest = "7.2.1" +pytest-cov = "4.0.0" +pytest-sugar = "0.9.6" +pytest-random-order = "1.1.0" +ssort = "0.11.6" +deepdiff = "6.3.0" +pytest-mock = "3.10.0" +xarray = "^2023.5.0" +bandit = "1.7.5" +tox = "4.6.3" + +[tool.poetry.group.docs.dependencies] +docutils = "0.17" +m2r2 = "0.3.2" +sphinx-rtd-theme = "1.2.2" +enum_tools = "0.10.0" +sphinx_toolbox = "3.5.0" +doc8 = "0.11.2" + + +[[tool.poetry.source]] +name = "testpypi" +url = "https://test.pypi.org/simple/" +priority = "supplemental" + +[build-system] +requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"] +build-backend = "poetry_dynamic_versioning.backend" + +[tool.poetry-dynamic-versioning] +enable = true + [tool.black] line-length = 100 target-version = ['py39'] @@ -177,97 +260,3 @@ extra-standard-library = ["zoneinfo"] [tool.doc8] max-line-length = 99 - -[build-system] -requires = ["setuptools>=45", "setuptools_scm[toml]>=6.2"] - -#[project] -#name = "deker" -#requires-python = ">=3.9" -#dynamic = ["version", "readme", "dependencies"] -#authors = [ -# { name = "OpenWeather", email = "info@openweathermap.org" }, -#] -#maintainers = [ -# { name = "OpenWeather", email = "info@openweathermap.org" }, -#] -#description = "Multidimensional arrays storage engine" -#license = { text = "GPL-3.0-only" } -#classifiers = [ -# "Development Status :: 4 - Beta", -# "Intended Audience :: Developers", -# "Intended Audience :: Information Technology", -# "Intended Audience :: Science/Research", -# "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", -# "Topic :: Software Development :: Libraries :: Python Modules", -# "Operating System :: Unix", -# "Operating System :: POSIX :: Linux", -# "Operating System :: MacOS :: MacOS X", -# "Programming Language :: Python", -# "Programming Language :: Python :: 3", -# "Programming Language :: Python :: 3.9", -# "Programming Language :: Python :: 3.10", -# "Programming Language :: Python :: 3.11", -#] -[project.optional-dependencies] -xarray = ["xarray>=2023.5.0"] - -[project.urls] -'Homepage' = 'https://deker.io/' -'Documentation' = 'https://docs.deker.io/' -'Repository' = 'https://github.com/openweathermap/deker' - -[tool.setuptools.dynamic] -readme = { file = ["README.md"], content-type = 'text/markdown' } -dependencies = { file = ["requirements.txt"] } - -[tool.setuptools] -packages = ["deker"] -license-files = ["LICENSE"] - -[tool.setuptools_scm] - -[tool.poetry.dependencies] -numpy = "^1.18" -attrs = "^23.1.0" -typing-extensions = "^4.4.0" -tqdm = "^4.64.1" -psutil = "^5.9.5" -deker-local-adapters = { version = "1.0.1b", source = "test" } - -[tool.poetry.group.dev.dependencies] -black = "23.1.0" -coverage = "7.1.0" -darglint = "1.8.1" -flake8 = "5.0.4" -flake8-bugbear = "23.1.20" -flake8-docstrings = "1.7.0" -flake8-import-order = "0.18.2" -flake8-pytest-style = "1.7.0" -isort = "5.12.0" -mypy = "1.0.0" -mypy-extensions = "1.0.0" -pep8-naming = "0.13.3" -pre-commit = "3.0.4" -pycln = "2.1.3" -pytest = "7.2.1" -pytest-cov = "4.0.0" -pytest-sugar = "0.9.6" -pytest-random-order = "1.1.0" -ssort = "0.11.6" -deepdiff = "6.3.0" -pytest-mock = "3.10.0" -xarray = "^2023.5.0" -bandit = "1.7.5" -tox = "4.6.3" - -[tool.poetry.group.docs.dependencies] -docutils = "0.17" -m2r2 = "0.3.2" -sphinx-rtd-theme = "1.2.2" -enum_tools = "0.10.0" -sphinx_toolbox = "3.5.0" -doc8 = "0.11.2" - -[too.poetry] -name = "deker" From a0dabc3f1f8ac635dc669b66764ad77c09aa53b0 Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 11:34:09 +0200 Subject: [PATCH 28/79] testing poetry builds --- .github/workflows/on_push.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 0e35b2a..5700e83 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -25,7 +25,8 @@ jobs: - name: Install dependencies run: | pipx install poetry - poetry install --without docs + poetry config virtualenvs.in-project true + poetry install - name: Cache virtual environment uses: actions/cache@v2 From 108efe857bc1e9725e8d17f9b012425073bcdbbb Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 15:54:14 +0600 Subject: [PATCH 29/79] changelog --- .github/workflows/changelog.yml | 8 +++++--- docs/deker/collection_schema.rst | 3 +++ 2 files changed, 8 insertions(+), 3 deletions(-) diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml index 5392d15..ac8b802 100644 --- a/.github/workflows/changelog.yml +++ b/.github/workflows/changelog.yml @@ -3,7 +3,10 @@ name: changelog on: push: workflow_dispatch: - + inputs: + release_version: + description: 'Set Release Version' + required: true jobs: changelog: runs-on: ubuntu-latest @@ -36,7 +39,6 @@ jobs: # In this example `release_version` is fetched from `workflow_dispatch` events input. # You can use any other method to fetch the release version # such as environment variable or from output of another action -# release_version: ${{ github.event.inputs.release_version }} - release_version: v1.1.0 + release_version: ${{ github.event.inputs.release_version }} # Optional github_token: ${{ secrets.GITHUB_TOKEN }} diff --git a/docs/deker/collection_schema.rst b/docs/deker/collection_schema.rst index 2ea5f91..00bed2f 100755 --- a/docs/deker/collection_schema.rst +++ b/docs/deker/collection_schema.rst @@ -578,6 +578,8 @@ And schema of ``Collection`` of ``VArray``:: VArray Grid ~~~~~~~~~~~ +.. note:: ``arrays_shape`` parameter added in v1.1.0 + Perhaps it is one of the most obscure issues. ``VArray`` shall be split into files, but it cannot decide itself how it shall be done. It's up to you, how you are going to split your data. There are two ways: ``vgrid`` and ``arrays_shape`` parameters. You can choose any of them, @@ -626,6 +628,7 @@ time to all new ``VArrays``. ``arrays_shape`` +++++++++++++++++ +`(added in v1.1.0)` Sometimes it is easier to decide on the shape of the final ``Arrays`` than on a ``vgrid``. In this case you can use ``arrays_shape`` parameter. From dabc6934aa1472236d38e0d4eaab9fdf2a7be903 Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 11:56:17 +0200 Subject: [PATCH 30/79] testing poetry builds --- .github/workflows/on_push.yml | 15 ++++++++------- .github/workflows/on_test_release.yml | 2 +- 2 files changed, 9 insertions(+), 8 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 5700e83..60e8488 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -26,12 +26,13 @@ jobs: run: | pipx install poetry poetry config virtualenvs.in-project true + poetry config virtualenvs.path venv poetry install - name: Cache virtual environment uses: actions/cache@v2 with: - path: .venv + path: venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} linters: @@ -49,12 +50,12 @@ jobs: - name: Load virtual environment uses: actions/cache@v2 with: - path: .venv + path: venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Run linters and checks run: | - source .venv/bin/activate + source venv/bin/activate isort ./${{ env.PYTHON_PACKAGE_NAME }} black ./${{ env.PYTHON_PACKAGE_NAME }} flake8 ./${{ env.PYTHON_PACKAGE_NAME }} @@ -85,12 +86,12 @@ jobs: - name: Load virtual environment uses: actions/cache@v2 with: - path: .venv + path: venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Run shuffled tests run: | - source .venv/bin/activate + source venv/bin/activate pytest --random-order --junitxml=tests.xml env: PIP_DISABLE_PIP_VERSION_CHECK: 1 @@ -117,12 +118,12 @@ jobs: - name: Load virtual environment uses: actions/cache@v2 with: - path: .venv + path: venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Run coverage run: | - source .venv/bin/activate + source venv/bin/activate coverage run -m pytest --junitxml=report.xml coverage report coverage xml diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index 08dffe6..da9ff8b 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -54,7 +54,7 @@ jobs: key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Make Sphinx docs run: | - source .venv/bin/activate + source venv/bin/activate doc8 --config pyproject.toml docs/deker cd ./docs make html From 2efc97457baa6298df8ceb7824046dedd4391264 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 15:58:09 +0600 Subject: [PATCH 31/79] changelog --- .github/workflows/changelog.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml index ac8b802..03c0705 100644 --- a/.github/workflows/changelog.yml +++ b/.github/workflows/changelog.yml @@ -1,7 +1,6 @@ name: changelog on: - push: workflow_dispatch: inputs: release_version: From b349f7805f1b68fbb7f5859584130ce1c59d8a8a Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 11:59:23 +0200 Subject: [PATCH 32/79] testing poetry builds --- .github/workflows/on_push.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 60e8488..680f34e 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -25,10 +25,10 @@ jobs: - name: Install dependencies run: | pipx install poetry - poetry config virtualenvs.in-project true poetry config virtualenvs.path venv + poetry config virtualenvs.in-project true poetry install - + ls - name: Cache virtual environment uses: actions/cache@v2 with: From 00c5e4c637a30afa993293fecc0995275341fd0e Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 16:06:15 +0600 Subject: [PATCH 33/79] changelog --- .github/workflows/changelog.yml | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml index 03c0705..e7e47db 100644 --- a/.github/workflows/changelog.yml +++ b/.github/workflows/changelog.yml @@ -1,11 +1,10 @@ name: changelog on: - workflow_dispatch: - inputs: - release_version: - description: 'Set Release Version' - required: true + push: + tags: + - 'v*' + - '!v[1-9]+.[0-9]+.[0-9]+' jobs: changelog: runs-on: ubuntu-latest From 9a5c816a2430d10c468e877ef301c226ce9427a7 Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 12:13:55 +0200 Subject: [PATCH 34/79] testing poetry builds --- .github/workflows/on_push.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 680f34e..5cbd778 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -28,11 +28,11 @@ jobs: poetry config virtualenvs.path venv poetry config virtualenvs.in-project true poetry install - ls + ls -la - name: Cache virtual environment uses: actions/cache@v2 with: - path: venv + path: .venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} linters: From bd963a6bd6b8fd9c8d229efc2f63d02ab5d221f8 Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 12:47:57 +0200 Subject: [PATCH 35/79] testing poetry builds --- .github/workflows/on_push.yml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 5cbd778..fed83dc 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -25,14 +25,13 @@ jobs: - name: Install dependencies run: | pipx install poetry - poetry config virtualenvs.path venv poetry config virtualenvs.in-project true poetry install - ls -la + mv .venv venv - name: Cache virtual environment uses: actions/cache@v2 with: - path: .venv + path: venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} linters: From e571cd55f22e0534f31d4ca9133b110199b33ae5 Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 14:03:01 +0200 Subject: [PATCH 36/79] testing poetry builds --- .github/workflows/on_push.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index fed83dc..8d9ac64 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -22,12 +22,12 @@ jobs: with: python-version: ${{ env.PYTHON_IMAGE }} - - name: Install dependencies - run: | - pipx install poetry - poetry config virtualenvs.in-project true - poetry install - mv .venv venv + - name: Install poetry + uses: snok/install-poetry@v1.3.4 + with: + virtualenvs-create: true + virtualenvs-in-project: true + - name: Cache virtual environment uses: actions/cache@v2 with: From de050ef9b7bd8dbda1e4a3822223bfbf7062586a Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 14:10:56 +0200 Subject: [PATCH 37/79] testing poetry builds --- .github/workflows/on_push.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 8d9ac64..72a421c 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -28,10 +28,13 @@ jobs: virtualenvs-create: true virtualenvs-in-project: true + - name: Install dependencies + run: poetry install + - name: Cache virtual environment uses: actions/cache@v2 with: - path: venv + path: .venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} linters: From 1afa7ca6773922624561098ca0c517d8a377e2d4 Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 14:16:43 +0200 Subject: [PATCH 38/79] testing poetry builds --- .github/workflows/on_push.yml | 6 +++--- .github/workflows/on_test_release.yml | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 72a421c..570513b 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -52,7 +52,7 @@ jobs: - name: Load virtual environment uses: actions/cache@v2 with: - path: venv + path: .venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Run linters and checks @@ -88,7 +88,7 @@ jobs: - name: Load virtual environment uses: actions/cache@v2 with: - path: venv + path: .venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Run shuffled tests @@ -120,7 +120,7 @@ jobs: - name: Load virtual environment uses: actions/cache@v2 with: - path: venv + path: .venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Run coverage diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index da9ff8b..7f6444b 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -50,7 +50,7 @@ jobs: - name: Load virtual environment uses: actions/cache@v2 with: - path: venv + path: .venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Make Sphinx docs run: | From 6be58ee810f676a54899bf64cd2262dd36d5528b Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 14:20:06 +0200 Subject: [PATCH 39/79] testing poetry builds --- .github/workflows/on_push.yml | 4 ++-- .github/workflows/on_test_release.yml | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 570513b..7a3e098 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -57,7 +57,7 @@ jobs: - name: Run linters and checks run: | - source venv/bin/activate + source .venv/bin/activate isort ./${{ env.PYTHON_PACKAGE_NAME }} black ./${{ env.PYTHON_PACKAGE_NAME }} flake8 ./${{ env.PYTHON_PACKAGE_NAME }} @@ -93,7 +93,7 @@ jobs: - name: Run shuffled tests run: | - source venv/bin/activate + source .venv/bin/activate pytest --random-order --junitxml=tests.xml env: PIP_DISABLE_PIP_VERSION_CHECK: 1 diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index 7f6444b..e96abc1 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -54,7 +54,7 @@ jobs: key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - name: Make Sphinx docs run: | - source venv/bin/activate + source .venv/bin/activate doc8 --config pyproject.toml docs/deker cd ./docs make html From 360925178a01e0f5f8fc09478fd1d89ec44ef750 Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 10 Aug 2023 14:39:24 +0200 Subject: [PATCH 40/79] testing poetry builds --- .github/workflows/on_push.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 7a3e098..7afbc41 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -7,6 +7,7 @@ on: env: PYTHON_IMAGE: 3.9 + PYTHON_PACKAGE_NAME: deker jobs: setup: @@ -125,7 +126,7 @@ jobs: - name: Run coverage run: | - source venv/bin/activate + source .venv/bin/activate coverage run -m pytest --junitxml=report.xml coverage report coverage xml From 91099fd0615340a497999b147c82a5e9c4d349cc Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 22:19:59 +0600 Subject: [PATCH 41/79] all configs in pyproject --- .github/workflows/on_test_release.yml | 5 +- poetry.lock | 22 ++- pyproject.toml | 218 ++++++++++++++++++++++---- setup.cfg | 100 ------------ tox.ini | 48 ------ 5 files changed, 213 insertions(+), 180 deletions(-) delete mode 100644 setup.cfg delete mode 100644 tox.ini diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index e96abc1..d53ff68 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -28,7 +28,10 @@ jobs: - name: Install tools run: | env - pipx install tox poetry + pip install tox poetry + poetry self add "poetry-dynamic-versioning[plugin]" + poetry source add pypi + poetry dynamic-versioning enable env: PIP_DISABLE_PIP_VERSION_CHECK: 1 - name: Make requirements file diff --git a/poetry.lock b/poetry.lock index 3e82b89..7cfffc0 100644 --- a/poetry.lock +++ b/poetry.lock @@ -694,6 +694,23 @@ files = [ {file = "flake8_plugin_utils-1.3.3-py3-none-any.whl", hash = "sha256:e4848c57d9d50f19100c2d75fa794b72df068666a9041b4b0409be923356a3ed"}, ] +[[package]] +name = "flake8-pyproject" +version = "1.2.3" +description = "Flake8 plug-in loading the configuration from pyproject.toml" +optional = false +python-versions = ">= 3.6" +files = [ + {file = "flake8_pyproject-1.2.3-py3-none-any.whl", hash = "sha256:6249fe53545205af5e76837644dc80b4c10037e73a0e5db87ff562d75fb5bd4a"}, +] + +[package.dependencies] +Flake8 = ">=5" +TOMLi = {version = "*", markers = "python_version < \"3.11\""} + +[package.extras] +dev = ["pyTest", "pyTest-cov"] + [[package]] name = "flake8-pytest-style" version = "1.7.0" @@ -2454,7 +2471,10 @@ files = [ docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] +[extras] +xarray = ["xarray"] + [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "81473ef02313750389fd21db7f276de438f96f279fd52609b1f33bb73831dc81" +content-hash = "9f4ca3e5cab659bc63ab1c1f501f10adc41fd036bcff2562e6ce1d1dca5a6c54" diff --git a/pyproject.toml b/pyproject.toml index bcde110..8e710ef 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,10 +1,28 @@ +### PROJECT ### +[build-system] +requires = ["setuptools>=45", "setuptools_scm[toml]>=6.2", "poetry-core>=1.0.0", "poetry-dynamic-versioning"] +build-backend = "poetry_dynamic_versioning.backend" + +[tool.setuptools.dynamic] +readme = {file = ["README.md"], content-type='text/markdown'} +dependencies = {file = ["requirements.txt"]} + +[tool.setuptools] +packages = ["deker"] +license-files=["LICENSE"] + +[tool.setuptools_scm] + [tool.poetry] +version = "0.0.0" name = "deker" -version = "0.1.0" description = "Multidimensional arrays storage engine" authors = ["OpenWeather "] license = "GPL-3.0-only" readme = "README.md" +documentation = 'https://docs.deker.io/' +homepage = 'https://deker.io/' +repository = 'https://github.com/openweathermap/deker' classifiers = [ "Development Status :: 4 - Beta", "Intended Audience :: Developers", @@ -21,9 +39,23 @@ classifiers = [ "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", ] -documentation = 'https://docs.deker.io/' -homepage = 'https://deker.io/' -repository = 'https://github.com/openweathermap/deker' + +[tool.poetry.extras] +xarray = ["xarray"] + +[tool.poetry-dynamic-versioning] +enable = true + +[[tool.poetry.source]] +name = "PyPI" +priority = "primary" + +[[tool.poetry.source]] +name = "testpypi" +url = "https://test.pypi.org/simple/" +priority = "supplemental" + +### DEPENDENCIES ### [tool.poetry.dependencies] python = "^3.9" @@ -32,13 +64,15 @@ attrs = "^23.1.0" typing-extensions = "^4.4.0" tqdm = "^4.64.1" psutil = "^5.9.5" +xarray = {version = "^2023.5.0", optional = true} +#deker-local-adapters = "1.0.1" deker-local-adapters = { version = "1.0.1b", source = "testpypi" } - [tool.poetry.group.dev.dependencies] black = "23.1.0" coverage = "7.1.0" darglint = "1.8.1" +Flake8-pyproject = "1.2.3" flake8 = "5.0.4" flake8-bugbear = "23.1.20" flake8-docstrings = "1.7.0" @@ -69,33 +103,15 @@ enum_tools = "0.10.0" sphinx_toolbox = "3.5.0" doc8 = "0.11.2" - -[[tool.poetry.source]] -name = "testpypi" -url = "https://test.pypi.org/simple/" -priority = "supplemental" - -[build-system] -requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"] -build-backend = "poetry_dynamic_versioning.backend" - -[tool.poetry-dynamic-versioning] -enable = true +### TOOLS ### [tool.black] -line-length = 100 target-version = ['py39'] -include = '\.pyi?$' -extend-exclude = ''' -# A regex preceded with ^/ will apply only to files and ctx -# in the root of the project. -^/foo.py # exclude a file named foo.py in the root of the project (in addition to the defaults) -examples/ -''' +line-length = 100 +[tool.mypy] # https://mypy.readthedocs.io/en/stable/ # https://pypi.org/project/mypy-extensions/ -[tool.mypy] python_version = "3.9" ignore_missing_imports = true scripts_are_modules = true @@ -112,6 +128,7 @@ exclude = [ '^setup\.py$', '^tmp\.py$', '^venv/', + '^.venv/', '^test+\.py$', '^conftest\.py$', '^tmp/', @@ -123,8 +140,8 @@ disable_error_code = "misc,no-redef,override,union-attr,index,assignment" module = "tests/*" disallow_untyped_defs = false -# https://pycqa.github.io/isort/ [tool.isort] +# https://pycqa.github.io/isort/ py_version = 39 sections = ['FUTURE', 'STDLIB', 'THIRDPARTY', 'FIRSTPARTY', 'LOCALFOLDER'] profile = "black" @@ -140,17 +157,18 @@ known_third_party = ["deker_tools"] extra_standard_library = ["zoneinfo"] use_parentheses = true -# https://hadialqattan.github.io/pycln/#/README [tool.pycln] +# https://hadialqattan.github.io/pycln/#/README all = true diff = true -exclude = "venv/*,.git/*,__pycache__/*,examples/*" - +exclude = "venv/*,.venv/*,.git/*,__pycache__/*,examples/*" [tool.bandit] +# https://github.com/PyCQA/bandit skips = ["B324"] [tool.ruff] +# https://github.com/astral-sh/ruff target-version = "py39" line-length = 120 select = ["ALL"] @@ -207,6 +225,7 @@ ignore = [ ] exclude = [ "venv/*", + ".venv/*", ".git/*", "__pycache__/*", ".mypy_cache/*", @@ -258,5 +277,144 @@ known-third-party = ["deker_tools"] extra-standard-library = ["zoneinfo"] [tool.doc8] +# https://github.com/PyCQA/doc8 max-line-length = 99 +[tool.pytest.ini_options] +# https://docs.pytest.org +# https://pypi.org/project/pytest-asyncio/ +# https://pytest-cov.readthedocs.io/en/latest/ +# https://pypi.org/project/pytest-pythonpath/ +# https://pypi.org/project/pytest-sugar/ +minversion = 7.0 +asyncio_mode = "auto" +addopts = ["--ignore=tmp.py"] +norecursedirs = "data" +testpaths = "./tests" + +#log_cli = true +#log_cli_level = "DEBUG" + +pythonpath = ["./deker", "./.venv", "./venv"] +filterwarnings = ["ignore::UserWarning", 'ignore::DeprecationWarning', "ignore::ResourceWarning"] + +[tool.flake8] +# https://flake8.pycqa.org/en/latest/ +# https://pypi.org/project/flake8-bugbear +# https://pypi.org/project/flake8-docstrings/ +# https://pypi.org/project/flake8-import-order/ +# https://pypi.org/project/flake8-pytest-style/ +# https://pypi.org/project/pep8-naming/ +min_python_version = 3.9 +max-complexity = 15 +max-doc-length = 120 +max-line-length = 120 +strictness = "full" +docstring_style = "sphinx" +docstring-convention = "pep257" +application_import_names = "deker" +import-order-style = "pycharm" +exclude = [ + "venv/*", + ".venv/*", + ".git/*", + "__pycache__/*", + ".mypy_cache/*", + ".pytest_cache/*", + ".idea/*", + "examples/*", + "tmp/*", + "tests/*", + "tmp.py" +] + +extend-select = ["D417"] +per-file-ignores = [ + "__init__.py: D104, F401, F403, F405, I100", + "deker/integrity.py: E501", + "deker/private/types/shell.py: D205, D400", + "deker/collection.py: D401", + "deker/subset.py: DAR101, E203", +] +ignore = [ + "B012", + "B019", + "D100", + "D104", + "D105", + "D106", + "D107", + "D203", + "D401", + "D403", + "D404", + "DAR002", + "DAR003", + "DAR104", + "DAR105", + "DAR201", + "DAR301", + "DAR401", + "DAR501", + "I101", + "I201", + "I202", + "N807", + "N813", + "W503", + "W504", +] + +[tool.tox] +legacy_tox_ini = """ +[tox] +requires = + tox>=4 +env_list = {py39,py310,py311}-lint, py{39,310,311}-test + +[testenv:{py39,py310,py311}-test] +description = run unit tests +deps = + deepdiff==6.3.0 + coverage==7.1.0 + pytest>=7 + pytest-sugar + pytest-mock==3.10.0 + xarray>=2023.5.0 + +commands = + pytest {posargs:tests} + +set_env = + PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} + +[testenv:{py39,py310,py311}-lint] +ignore_base_python_conflict = true +description = run linters +deps = black==23.1.0 + Flake8-pyproject==1.2.3 + darglint==1.8.1 + flake8==5.0.4 + flake8-bugbear==23.1.20 + flake8-docstrings==1.7.0 + flake8-import-order==0.18.2 + flake8-pytest-style==1.7.0 + isort==5.12.0 + mypy==1.0.0 + mypy-extensions==1.0.0 + pep8-naming==0.13.3 + bandit==1.7.5 + ssort==0.11.6 + deepdiff==6.3.0 + xarray>=2023.5.0 + +commands = ssort {posargs:deker} + isort {posargs:deker} + black {posargs:deker} + flake8 {posargs:deker} + bandit -r {posargs:deker} -c pyproject.toml + mypy {posargs:deker} --install-types --non-interactive --config-file pyproject.toml + +set_env = + PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} +""" diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index 81bcb6b..0000000 --- a/setup.cfg +++ /dev/null @@ -1,100 +0,0 @@ -; https://flake8.pycqa.org/en/latest/ -; https://pypi.org/project/flake8-bugbear -; https://pypi.org/project/flake8-docstrings/ -; https://pypi.org/project/flake8-import-order/ -; https://pypi.org/project/flake8-pytest-style/ -; https://pypi.org/project/pep8-naming/ -[flake8] -min_python_version = 3.9 -max-complexity = 15 -max-doc-length = 120 -max-line-length = 120 -strictness = full -docstring_style = sphinx -docstring-convention = pep257 -application_import_names = deker -import-order-style = pycharm -exclude = - venv/*, - .git/*, - __pycache__/*, - .mypy_cache/*, - .pytest_cache/*, - .idea/*, - examples/*, - tmp/*, - tests/*, - tmp.py - -extend-select = D417 -per-file-ignores = - __init__.py: D104, F401, F403, F405, I100 - deker/integrity.py: E501 - deker/private/types/shell.py: D205, D400 - deker/collection.py: D401 - deker/subset.py: DAR101, E203 - -ignore = - B012, - B019, - D100, - D104, - D105, - D106, - D107, - D203, - D401, - D403, - D404, - DAR002, - DAR003, - DAR104, - DAR105, - DAR201, - DAR301, - DAR401, - DAR501, - I101 - I201, - I202, - N807, - N813, - W503, - W504, - -; https://pypi.org/project/darglint -[darglint] -strictness = full -docstring_style = sphinx -ignore = - DAR003, - DAR104, - DAR105, - DAR201, - DAR401 - -; https://docs.pytest.org -; https://pypi.org/project/pytest-asyncio/ -; https://pytest-cov.readthedocs.io/en/latest/ -; https://pypi.org/project/pytest-pythonpath/ -; https://pypi.org/project/pytest-sugar/ -[tool:pytest] -minversion = 7.0 -asyncio_mode = auto -addopts = --ignore=tmp.py -norecursedirs = data -testpaths = ./tests - -;log_cli = true -;log_cli_level = DEBUG - - -; for pytest < 7.0 -;python_paths = ./deker ./venv -; for pytest >= 7.0 -pythonpath = ./deker ./venv - -filterwarnings = - ignore::UserWarning - ignore::DeprecationWarning - ignore::ResourceWarning diff --git a/tox.ini b/tox.ini deleted file mode 100644 index da607d7..0000000 --- a/tox.ini +++ /dev/null @@ -1,48 +0,0 @@ -[tox] -requires = - tox>=4 -env_list = {py39,py310,py311}-lint, py{39,310,311}-test - -[testenv:{py39,py310,py311}-test] -description = run unit tests -deps = - deepdiff==6.3.0 - pytest>=7 - pytest-sugar - pytest-mock==3.10.0 - xarray>=2023.5.0 - -commands = - pytest {posargs:tests} - -set_env = - PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} - -[testenv:{py39,py310,py311}-lint] -ignore_base_python_conflict = true -description = run linters -deps = black==23.1.0 - coverage==7.1.0 - darglint==1.8.1 - flake8==5.0.4 - flake8-bugbear==23.1.20 - flake8-docstrings==1.7.0 - flake8-import-order==0.18.2 - flake8-pytest-style==1.7.0 - isort==5.12.0 - mypy==1.0.0 - mypy-extensions==1.0.0 - pep8-naming==0.13.3 - bandit==1.7.5 - ssort==0.11.6 - deepdiff==6.3.0 - xarray>=2023.5.0 - -commands = isort {posargs:deker} - black {posargs:deker} - flake8 {posargs:deker} - bandit -r {posargs:deker} -c pyproject.toml - mypy {posargs:deker} --install-types --non-interactive --config-file pyproject.toml - -set_env = - PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} From 17b236da0b282c89d3b11ead1162187874e92697 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 22:26:30 +0600 Subject: [PATCH 42/79] configs fix --- .pre-commit-config.yaml | 3 ++- pyproject.toml | 4 ---- 2 files changed, 2 insertions(+), 5 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 19bad54..c2a1c40 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -96,9 +96,10 @@ repos: name: flake8 files: ^deker/ always_run: false - args: [ --config, setup.cfg, deker] + args: [ deker] verbose: true additional_dependencies: + - Flake8-pyproject - flake8-bugbear - flake8-pytest-style - flake8-docstrings diff --git a/pyproject.toml b/pyproject.toml index 8e710ef..9ea9052 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -46,10 +46,6 @@ xarray = ["xarray"] [tool.poetry-dynamic-versioning] enable = true -[[tool.poetry.source]] -name = "PyPI" -priority = "primary" - [[tool.poetry.source]] name = "testpypi" url = "https://test.pypi.org/simple/" From 79be576bce1ad5801fca4a24f3fe94b795d0e2c1 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 22:44:16 +0600 Subject: [PATCH 43/79] poetry dynamic version enabling --- .github/workflows/on_release.yml | 2 +- .github/workflows/on_test_release.yml | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/on_release.yml b/.github/workflows/on_release.yml index 0e09bfb..eb3ed33 100644 --- a/.github/workflows/on_release.yml +++ b/.github/workflows/on_release.yml @@ -133,7 +133,7 @@ jobs: - name: Build sdist run: | - pipx install poetry + pip install poetry poetry build -f sdist - uses: actions/upload-artifact@v3 diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index d53ff68..e7215de 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -30,7 +30,6 @@ jobs: env pip install tox poetry poetry self add "poetry-dynamic-versioning[plugin]" - poetry source add pypi poetry dynamic-versioning enable env: PIP_DISABLE_PIP_VERSION_CHECK: 1 @@ -75,7 +74,8 @@ jobs: - name: Build sdist run: | - pipx install poetry + pip install poetry + poetry self add "poetry-dynamic-versioning[plugin]" poetry build -f sdist - uses: actions/upload-artifact@v3 From 3d4c7651daa7236a710548e2e0a468cd922b770a Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 22:54:34 +0600 Subject: [PATCH 44/79] poetry dynamic version enabling --- .github/workflows/on_test_release.yml | 17 ++++++++++++++--- 1 file changed, 14 insertions(+), 3 deletions(-) diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index e7215de..0e00180 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -24,17 +24,20 @@ jobs: run: pyenv global 3.9 3.10 3.11 - name: Checkout code - uses: actions/checkout@v2 + uses: actions/checkout@v3 + with: + fetch-depth: 0 + - name: Install tools run: | env pip install tox poetry - poetry self add "poetry-dynamic-versioning[plugin]" - poetry dynamic-versioning enable env: PIP_DISABLE_PIP_VERSION_CHECK: 1 + - name: Make requirements file run: poetry export --without-hashes > requirements.txt + - name: Run tox tests run: | export PIP_EXTRA_INDEX_URL=https://test.pypi.org/simple @@ -49,17 +52,22 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 + with: + fetch-depth: 0 + - name: Load virtual environment uses: actions/cache@v2 with: path: .venv key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} + - name: Make Sphinx docs run: | source .venv/bin/activate doc8 --config pyproject.toml docs/deker cd ./docs make html + - name: Upload artifact uses: actions/upload-pages-artifact@v2 with: @@ -71,11 +79,14 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 + with: + fetch-depth: 0 - name: Build sdist run: | pip install poetry poetry self add "poetry-dynamic-versioning[plugin]" + poetry dynamic-versioning enable poetry build -f sdist - uses: actions/upload-artifact@v3 From df7b50056e5b343d871558c78636b1fd67a0be07 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 23:28:19 +0600 Subject: [PATCH 45/79] poetry dynamic version enabling --- .github/workflows/on_test_release.yml | 6 +----- pyproject.toml | 22 ++++++++-------------- 2 files changed, 9 insertions(+), 19 deletions(-) diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index 0e00180..4efdf3d 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -25,8 +25,6 @@ jobs: - name: Checkout code uses: actions/checkout@v3 - with: - fetch-depth: 0 - name: Install tools run: | @@ -52,8 +50,6 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 - with: - fetch-depth: 0 - name: Load virtual environment uses: actions/cache@v2 @@ -84,8 +80,8 @@ jobs: - name: Build sdist run: | + pip install poetry-dynamic-versioning pip install poetry - poetry self add "poetry-dynamic-versioning[plugin]" poetry dynamic-versioning enable poetry build -f sdist diff --git a/pyproject.toml b/pyproject.toml index 9ea9052..5ed3373 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,25 +1,17 @@ ### PROJECT ### [build-system] -requires = ["setuptools>=45", "setuptools_scm[toml]>=6.2", "poetry-core>=1.0.0", "poetry-dynamic-versioning"] -build-backend = "poetry_dynamic_versioning.backend" - -[tool.setuptools.dynamic] -readme = {file = ["README.md"], content-type='text/markdown'} -dependencies = {file = ["requirements.txt"]} - -[tool.setuptools] -packages = ["deker"] -license-files=["LICENSE"] - -[tool.setuptools_scm] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" [tool.poetry] version = "0.0.0" name = "deker" +packages = [{ include = "deker" }] description = "Multidimensional arrays storage engine" authors = ["OpenWeather "] license = "GPL-3.0-only" -readme = "README.md" +license-files=["LICENSE"] +readme = {file = ["README.md"], content-type='text/markdown'} documentation = 'https://docs.deker.io/' homepage = 'https://deker.io/' repository = 'https://github.com/openweathermap/deker' @@ -44,7 +36,9 @@ classifiers = [ xarray = ["xarray"] [tool.poetry-dynamic-versioning] -enable = true +vcs = "git" +style = "semver" +metadata = false [[tool.poetry.source]] name = "testpypi" From fa452f98c480064a3c19262a9859c81621eed76c Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 10 Aug 2023 23:33:07 +0600 Subject: [PATCH 46/79] poetry config fix --- pyproject.toml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 5ed3373..8154808 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,8 +10,7 @@ packages = [{ include = "deker" }] description = "Multidimensional arrays storage engine" authors = ["OpenWeather "] license = "GPL-3.0-only" -license-files=["LICENSE"] -readme = {file = ["README.md"], content-type='text/markdown'} +readme = "README.md" documentation = 'https://docs.deker.io/' homepage = 'https://deker.io/' repository = 'https://github.com/openweathermap/deker' From b68610bc58193a8b24ab368e2c99426f62b96095 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 11 Aug 2023 00:16:45 +0600 Subject: [PATCH 47/79] docs build fix --- .github/github-actions.yml | 281 -------------------------- .github/workflows/on_push.yml | 8 +- .github/workflows/on_release.yml | 73 ++----- .github/workflows/on_test_release.yml | 54 +---- 4 files changed, 37 insertions(+), 379 deletions(-) delete mode 100644 .github/github-actions.yml diff --git a/.github/github-actions.yml b/.github/github-actions.yml deleted file mode 100644 index 0a9782f..0000000 --- a/.github/github-actions.yml +++ /dev/null @@ -1,281 +0,0 @@ -name: pipeline - -on: - push: - -env: - PYTHON_IMAGE: 3.9 - -jobs: - setup: - runs-on: ubuntu-latest - timeout-minutes: 60 - - steps: - - name: Checkout code - uses: actions/checkout@v2 - - - name: Set up Python - uses: actions/setup-python@v3 - with: - python-version: ${{ env.PYTHON_IMAGE }} - - - name: Install dependencies - run: | - pip install --upgrade pip - pip install virtualenv - virtualenv venv - source venv/bin/activate - pip install -r requirements.txt - pip install -r requirements_dev.txt - pip list - - - name: Cache virtual environment - uses: actions/cache@v2 - with: - path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} - - linters: - needs: setup - runs-on: ubuntu-latest - if: ${{ !startsWith(github.ref, 'refs/tags/v') }} - - steps: - - name: Checkout code - uses: actions/checkout@v2 - - - name: Set up Python - uses: actions/setup-python@v3 - with: - python-version: ${{ env.PYTHON_IMAGE }} - - - name: Load virtual environment - uses: actions/cache@v2 - with: - path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} - - - name: Run linters and checks - run: | - source venv/bin/activate - isort ./${{ env.PYTHON_PACKAGE_NAME }} - black ./${{ env.PYTHON_PACKAGE_NAME }} - flake8 ./${{ env.PYTHON_PACKAGE_NAME }} - mypy ./${{ env.PYTHON_PACKAGE_NAME }} --install-types --non-interactive --config-file pyproject.toml - doc8 --config pyproject.toml ./docs/deker - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - - - name: Save linter reports - if: always() - uses: actions/upload-artifact@v2 - with: - name: linter-reports - path: report.xml - - tests: - needs: setup - runs-on: ubuntu-latest - if: ${{ !startsWith(github.ref, 'refs/tags/v') }} - steps: - - name: Checkout code - uses: actions/checkout@v2 - - - name: Set up Python - uses: actions/setup-python@v2 - with: - python-version: ${{ env.PYTHON_IMAGE }} - - - name: Load virtual environment - uses: actions/cache@v2 - with: - path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} - - - name: Run shuffled tests - run: | - source venv/bin/activate - pytest --random-order --junitxml=tests.xml - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - - - name: Save test reports - if: always() - uses: actions/upload-artifact@v2 - with: - name: test-reports - path: tests.xml - - coverage: - needs: setup - runs-on: ubuntu-latest - if: ${{ !startsWith(github.ref, 'refs/tags/v') }} - steps: - - name: Checkout code - uses: actions/checkout@v2 - - - name: Set up Python - uses: actions/setup-python@v2 - with: - python-version: ${{ env.PYTHON_IMAGE }} - - - name: Load virtual environment - uses: actions/cache@v2 - with: - path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} - - - name: Run coverage - run: | - source venv/bin/activate - coverage run -m pytest --junitxml=report.xml - coverage report - coverage xml - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - - - name: Save coverage reports - if: always() - uses: actions/upload-artifact@v2 - with: - name: coverage-reports - path: coverage.xml - - tox_tests: - needs: setup - runs-on: ubuntu-latest - if: startsWith(github.ref, 'refs/tags/v') - container: - image: ghcr.io/openweathermap/deker/deker-embedded/tox:latest - env: - PACKAGE_VERSION: ${{ github.REF_NAME }} - PIP_EXTRA_INDEX_URL: https://test.pypi.org/simple/ - credentials: - username: ${{ github.actor }} - password: ${{ secrets.GITHUB_TOKEN }} - steps: - - name: Set python versions - run: pyenv global 3.9 3.10 3.11 - - - name: Checkout code - uses: actions/checkout@v2 - - name: Install tox - run: | - env - pip install tox - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - PIP_EXTRA_INDEX_URL: https://test.pypi.org/simple/ - - name: Run tox tests - run: | - env - tox - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - PACKAGE_VERSION: ${{ github.REF_NAME }} - PIP_EXTRA_INDEX_URL: https://test.pypi.org/simple/ - - build_wheels: - name: Build wheels on ${{ matrix.os }} - needs: tox_tests - if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') - runs-on: ${{ matrix.os }} - strategy: - matrix: - os: [ubuntu-22.04] - - steps: - - uses: actions/checkout@v3 - - - name: Build wheels - run: | - pip wheel -w ./wheelhouse . - - - build_sdist: - needs: tox_tests - name: Build source distribution - if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - - - name: Build sdist - run: pipx run build --sdist - - - uses: actions/upload-artifact@v3 - with: - path: dist/*.tar.gz - - build_docs: - needs: setup - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - - name: Load virtual environment - uses: actions/cache@v2 - with: - path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} - - name: Make Sphinx docs - run: | - source venv/bin/activate - cd ./docs - make html - ls -la _build/html - - name: Upload artifact - uses: actions/upload-pages-artifact@v2 - with: - path: docs/_build/html - - publish_docs: - needs: build_docs - if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') - runs-on: ubuntu-latest - permissions: - contents: read - pages: write - id-token: write - concurrency: - group: "pages" - cancel-in-progress: false - environment: - name: github-pages - url: ${{ steps.deployment.outputs.page_url }} - steps: - - name: Deploy to GitHub Pages - uses: actions/deploy-pages@v2 - with: - github_token: ${{ secrets.GITHUB_TOKEN }} - branch: gh-pages - force: true - directory: docs/_build/html - - upload_pypi: - needs: [build_wheels, build_sdist] - runs-on: ubuntu-latest - permissions: - id-token: write - if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') - environment: - # TODO: next is for prod pypi; comment for tests -# name: pypi -# url: https://pypi.org/p/deker - # TODO: next is for test pypi; comment for prod - name: testpypi - url: https://test.pypi.org/p/deker - - steps: - - uses: actions/download-artifact@v3 - with: - # unpacks default artifact into dist/ - # if `name: artifact` is omitted, the action will create extra parent dir - name: artifact - path: dist - - - name: Publish package distributions to PyPI - uses: pypa/gh-action-pypi-publish@release/v1 - # TODO: next is for test pypi; comment for prod - with: - repository-url: https://test.pypi.org/legacy/ diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 7afbc41..97b2292 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -16,7 +16,7 @@ jobs: steps: - name: Checkout code - uses: actions/checkout@v2 + uses: actions/checkout@v3 - name: Set up Python uses: actions/setup-python@v3 @@ -43,7 +43,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout code - uses: actions/checkout@v2 + uses: actions/checkout@v3 - name: Set up Python uses: actions/setup-python@v3 @@ -79,7 +79,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout code - uses: actions/checkout@v2 + uses: actions/checkout@v3 - name: Set up Python uses: actions/setup-python@v2 @@ -111,7 +111,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout code - uses: actions/checkout@v2 + uses: actions/checkout@v3 - name: Set up Python uses: actions/setup-python@v2 diff --git a/.github/workflows/on_release.yml b/.github/workflows/on_release.yml index eb3ed33..85fa946 100644 --- a/.github/workflows/on_release.yml +++ b/.github/workflows/on_release.yml @@ -9,36 +9,7 @@ env: PYTHON_IMAGE: 3.9 jobs: - setup: - runs-on: ubuntu-latest - timeout-minutes: 60 - - steps: - - name: Checkout code - uses: actions/checkout@v2 - - - name: Set up Python - uses: actions/setup-python@v3 - with: - python-version: ${{ env.PYTHON_IMAGE }} - - - name: Install dependencies - run: | - pip install --upgrade pip - pip install virtualenv - virtualenv venv - source venv/bin/activate - pip install -r requirements_dev.txt - pip list - - - name: Cache virtual environment - uses: actions/cache@v2 - with: - path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} - tox_tests: - needs: setup runs-on: ubuntu-latest container: image: ghcr.io/openweathermap/deker/deker-embedded/tox:latest @@ -52,15 +23,21 @@ jobs: run: pyenv global 3.9 3.10 3.11 - name: Checkout code - uses: actions/checkout@v2 - - name: Install tox + uses: actions/checkout@v3 + + - name: Install tools run: | env - pip install tox + pip install tox poetry env: PIP_DISABLE_PIP_VERSION_CHECK: 1 + + - name: Make requirements file + run: poetry export --without-hashes > requirements.txt + - name: Run tox tests run: | + export PIP_EXTRA_INDEX_URL=https://test.pypi.org/simple env tox env: @@ -72,22 +49,26 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 + - name: Load virtual environment uses: actions/cache@v2 with: - path: venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('requirements.txt', 'requirements_dev.txt') }} + path: .venv + key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} + - name: Make Sphinx docs run: | - source venv/bin/activate + source .venv/bin/activate doc8 --config pyproject.toml docs/deker cd ./docs make html + - name: Upload artifact uses: actions/upload-pages-artifact@v2 with: path: docs/_build/html + publish_docs: needs: build_docs runs-on: ubuntu-latest @@ -110,30 +91,20 @@ jobs: force: true directory: docs/_build/html - build_wheels: - name: Build wheels on ${{ matrix.os }} - needs: tox_tests - runs-on: ${{ matrix.os }} - strategy: - matrix: - os: [ubuntu-22.04] - - steps: - - uses: actions/checkout@v3 - - name: Build wheels - run: | - pip wheel -w ./wheelhouse . - build_sdist: - needs: tox_tests + needs: build_docs name: Build source distribution runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 + with: + fetch-depth: 0 - name: Build sdist run: | + pip install poetry-dynamic-versioning pip install poetry + poetry dynamic-versioning enable poetry build -f sdist - uses: actions/upload-artifact@v3 @@ -141,7 +112,7 @@ jobs: path: dist/*.tar.gz upload_pypi: - needs: [build_sdist] + needs: [build_sdist, publish_docs] runs-on: ubuntu-latest permissions: id-token: write diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index 4efdf3d..375b97e 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -10,56 +10,25 @@ env: PYTHON_IMAGE: 3.9 jobs: - tox_tests: - runs-on: ubuntu-latest - container: - image: ghcr.io/openweathermap/deker/deker-embedded/tox:latest - env: - PACKAGE_VERSION: ${{ github.REF_NAME }} - credentials: - username: ${{ github.actor }} - password: ${{ secrets.GITHUB_TOKEN }} - steps: - - name: Set python versions - run: pyenv global 3.9 3.10 3.11 - - - name: Checkout code - uses: actions/checkout@v3 - - - name: Install tools - run: | - env - pip install tox poetry - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - - - name: Make requirements file - run: poetry export --without-hashes > requirements.txt - - - name: Run tox tests - run: | - export PIP_EXTRA_INDEX_URL=https://test.pypi.org/simple - env - tox - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - PACKAGE_VERSION: ${{ github.REF_NAME }} - build_docs: - needs: tox_tests runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 - - name: Load virtual environment - uses: actions/cache@v2 + - name: Set up Python + uses: actions/setup-python@v3 with: - path: .venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} + python-version: ${{ env.PYTHON_IMAGE }} - - name: Make Sphinx docs + - name: Install poetry + uses: snok/install-poetry@v1.3.4 + with: + virtualenvs-create: true + virtualenvs-in-project: true + + - name: Install dependencies run: | - source .venv/bin/activate + poetry install doc8 --config pyproject.toml docs/deker cd ./docs make html @@ -69,7 +38,6 @@ jobs: with: path: docs/_build/html - build_sdist: name: Build source distribution runs-on: ubuntu-latest From da7cd6775bc7f4b0cdff290ea3c00c88ad9ceda0 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 11 Aug 2023 00:28:02 +0600 Subject: [PATCH 48/79] docs build fix --- .github/workflows/on_test_release.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index 375b97e..ee738f7 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -29,7 +29,7 @@ jobs: - name: Install dependencies run: | poetry install - doc8 --config pyproject.toml docs/deker + poetry run doc8 --config pyproject.toml docs/deker cd ./docs make html From 66866c042fa2373496b8c230731de6d6cd618813 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 11 Aug 2023 00:31:53 +0600 Subject: [PATCH 49/79] docs build fix --- .github/workflows/on_test_release.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index ee738f7..955e0bc 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -29,7 +29,8 @@ jobs: - name: Install dependencies run: | poetry install - poetry run doc8 --config pyproject.toml docs/deker + poetry shell + doc8 --config pyproject.toml docs/deker cd ./docs make html From 54e3c3a0fefc6975721b6bd1cda7b38c1d73c9e0 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 11 Aug 2023 00:37:17 +0600 Subject: [PATCH 50/79] docs build fix --- .github/workflows/on_test_release.yml | 2 +- .gitignore | 2 +- CNAME | 2 +- docs/deker/installation.rst | 1 - docs/deker/shell.rst | 1 - docs/index.rst | 1 - 6 files changed, 3 insertions(+), 6 deletions(-) diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index 955e0bc..cf5b58a 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -29,7 +29,7 @@ jobs: - name: Install dependencies run: | poetry install - poetry shell + source .venv/bin/activate doc8 --config pyproject.toml docs/deker cd ./docs make html diff --git a/.gitignore b/.gitignore index 446900c..9a40230 100644 --- a/.gitignore +++ b/.gitignore @@ -154,4 +154,4 @@ tmp/ .python-version build .ruff_cache/ -dist/ \ No newline at end of file +dist/ diff --git a/CNAME b/CNAME index 23dfcfd..dac007c 100644 --- a/CNAME +++ b/CNAME @@ -1 +1 @@ -docs.deker.io \ No newline at end of file +docs.deker.io diff --git a/docs/deker/installation.rst b/docs/deker/installation.rst index dd1634c..2c2410f 100755 --- a/docs/deker/installation.rst +++ b/docs/deker/installation.rst @@ -84,4 +84,3 @@ Deker. To install Deker tools package:: pip install deker-tools - diff --git a/docs/deker/shell.rst b/docs/deker/shell.rst index 60c4513..bce5989 100644 --- a/docs/deker/shell.rst +++ b/docs/deker/shell.rst @@ -91,4 +91,3 @@ Functions * ``use("collection_name")``: gets collection from client and saves it to ``collection`` variable * ``get_global_coll_variable()``: returns ``collection`` global variable - diff --git a/docs/index.rst b/docs/index.rst index 7c889c5..8ecee72 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -81,4 +81,3 @@ Open source implementation of Deker storage engine is published at API documentation and tutorials for the current release could be found at * https://docs.deker.io - From 14d9c769d87764df683fd2dadb2ca485dbd0be41 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 11 Aug 2023 01:05:34 +0600 Subject: [PATCH 51/79] coverage config in pyproject, CI workflows ready --- .coveragerc | 29 --------------------- .github/workflows/on_release.yml | 17 +++++++----- .github/workflows/on_test_release.yml | 32 ----------------------- pyproject.toml | 37 ++++++++++++++++++++++++--- 4 files changed, 45 insertions(+), 70 deletions(-) delete mode 100644 .coveragerc diff --git a/.coveragerc b/.coveragerc deleted file mode 100644 index d207a33..0000000 --- a/.coveragerc +++ /dev/null @@ -1,29 +0,0 @@ -[run] -branch = True -omit = - examples/* - tests/* - tmp.py - setup.py - deker/typings.py - deker/app_types/shell.py - deker/tools/profiling.py - deker/tools/data.py - profiling/* - -[html] -directory = tests/code_coverage - -[report] -fail_under=95 -exclude_lines = - no cov - pragma: no cover - if typing.TYPE_CHECKING: - if TYPE_CHECKING: - if __name__ == .__main__.: - pass - raise NotImplementedError - except ImportError - except ModuleNotFoundError - except Exception diff --git a/.github/workflows/on_release.yml b/.github/workflows/on_release.yml index 85fa946..7d0eae7 100644 --- a/.github/workflows/on_release.yml +++ b/.github/workflows/on_release.yml @@ -50,14 +50,20 @@ jobs: steps: - uses: actions/checkout@v3 - - name: Load virtual environment - uses: actions/cache@v2 + - name: Set up Python + uses: actions/setup-python@v3 with: - path: .venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} + python-version: ${{ env.PYTHON_IMAGE }} - - name: Make Sphinx docs + - name: Install poetry + uses: snok/install-poetry@v1.3.4 + with: + virtualenvs-create: true + virtualenvs-in-project: true + + - name: Install dependencies run: | + poetry install source .venv/bin/activate doc8 --config pyproject.toml docs/deker cd ./docs @@ -68,7 +74,6 @@ jobs: with: path: docs/_build/html - publish_docs: needs: build_docs runs-on: ubuntu-latest diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index cf5b58a..4faf428 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -6,39 +6,7 @@ on: - 'v*' - '!v[1-9]+.[0-9]+.[0-9]+' -env: - PYTHON_IMAGE: 3.9 - jobs: - build_docs: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - - - name: Set up Python - uses: actions/setup-python@v3 - with: - python-version: ${{ env.PYTHON_IMAGE }} - - - name: Install poetry - uses: snok/install-poetry@v1.3.4 - with: - virtualenvs-create: true - virtualenvs-in-project: true - - - name: Install dependencies - run: | - poetry install - source .venv/bin/activate - doc8 --config pyproject.toml docs/deker - cd ./docs - make html - - - name: Upload artifact - uses: actions/upload-pages-artifact@v2 - with: - path: docs/_build/html - build_sdist: name: Build source distribution runs-on: ubuntu-latest diff --git a/pyproject.toml b/pyproject.toml index 8154808..69f6947 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -287,6 +287,33 @@ testpaths = "./tests" pythonpath = ["./deker", "./.venv", "./venv"] filterwarnings = ["ignore::UserWarning", 'ignore::DeprecationWarning', "ignore::ResourceWarning"] +[tool.coverage.run] +branch = true +omit = [ + "tests/*", + "tmp.py", + "setup.py", + "deker/types/private/shell.py", +] + +[tool.coverage.html] +directory = "tests/code_coverage" + +[tool.coverage.report] +fail_under=96 +exclude_lines = [ + "no cov", + "pragma: no cover", + "if typing.TYPE_CHECKING:", + "if TYPE_CHECKING:", + "if __name__ == .__main__.:", + "pass", + "raise NotImplementedError", + "except ImportError", + "except ModuleNotFoundError", + "except Exception" +] + [tool.flake8] # https://flake8.pycqa.org/en/latest/ # https://pypi.org/project/flake8-bugbear @@ -366,13 +393,15 @@ description = run unit tests deps = deepdiff==6.3.0 coverage==7.1.0 - pytest>=7 - pytest-sugar + pytest==7.2.1 + pytest-sugar==0.9.6 pytest-mock==3.10.0 + pytest-random-order==1.1.0 xarray>=2023.5.0 commands = - pytest {posargs:tests} + coverage run -m pytest {posargs:tests} --random-order + coverage report set_env = PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} @@ -383,6 +412,7 @@ description = run linters deps = black==23.1.0 Flake8-pyproject==1.2.3 darglint==1.8.1 + doc8==0.11.2 flake8==5.0.4 flake8-bugbear==23.1.20 flake8-docstrings==1.7.0 @@ -403,6 +433,7 @@ commands = ssort {posargs:deker} flake8 {posargs:deker} bandit -r {posargs:deker} -c pyproject.toml mypy {posargs:deker} --install-types --non-interactive --config-file pyproject.toml + doc8 {posargs:docs/deker} --config=pyproject.toml set_env = PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} From eaf39d93dbd4f107f565f1e9f995dc067abea979 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 11 Aug 2023 20:02:49 +0600 Subject: [PATCH 52/79] README fix --- README.md | 1 - 1 file changed, 1 deletion(-) diff --git a/README.md b/README.md index e7e563f..0d54380 100644 --- a/README.md +++ b/README.md @@ -65,7 +65,6 @@ Python using [Rosetta](https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment) x86_64 to arm64 dynamic binary translator. - You may use the following [guide](https://sixty-north.com/blog/pyenv-apple-silicon.html) to install x86_64 version of Python an then switch to that version in your Deker project using ``pyenv`` and install Deker package as usual. From a4a72a3d03e4f4b6a63e4c6964265ba101085b50 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov <64586748+SerGeRybakov@users.noreply.github.com> Date: Fri, 11 Aug 2023 20:07:35 +0600 Subject: [PATCH 53/79] Update README.md --- README.md | 25 ++++++++++++------------- 1 file changed, 12 insertions(+), 13 deletions(-) diff --git a/README.md b/README.md index 0d54380..3847483 100644 --- a/README.md +++ b/README.md @@ -56,19 +56,18 @@ API documentation and tutorials for the current release could be found at ## Installation ---- -**Apple Silicon (M series CPU)** - -Deker uses NumPy, and some NumPy types are unsupported on current NumPy arm64 version. So if you -want to use Deker library on Apple Silicon (M series CPU), you have to install x86_64 version of -Python using -[Rosetta](https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment) -x86_64 to arm64 dynamic binary translator. - -You may use the following [guide](https://sixty-north.com/blog/pyenv-apple-silicon.html) to install -x86_64 version of Python an then switch to that version in your Deker project using ``pyenv`` and -install Deker package as usual. ---- +> **Apple Silicon (M series CPU)** +> +> Deker uses NumPy, and some NumPy types are unsupported on current NumPy arm64 version. So if you +> want to use Deker library on Apple Silicon (M series CPU), you have to install x86_64 version of +> Python using +> [Rosetta](https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment) +> x86_64 to arm64 dynamic binary translator. +> +> You may use the following [guide](https://sixty-north.com/blog/pyenv-apple-silicon.html) to install +> x86_64 version of Python an then switch to that version in your Deker project using ``pyenv`` and +> install Deker package as usual. + ### Deker ``` From b22e99468ab3ec4ec6761c576e52873a90f20e88 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 11 Aug 2023 20:13:02 +0600 Subject: [PATCH 54/79] MANIFEST.in removed --- MANIFEST.in | 1 - 1 file changed, 1 deletion(-) delete mode 100644 MANIFEST.in diff --git a/MANIFEST.in b/MANIFEST.in deleted file mode 100644 index f9bd145..0000000 --- a/MANIFEST.in +++ /dev/null @@ -1 +0,0 @@ -include requirements.txt From 06383205979f05d1c050d077573ec69115b81501 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 11 Aug 2023 22:53:24 +0600 Subject: [PATCH 55/79] coverage --fail-under added to tox and coverage tests --- .github/workflows/on_push.yml | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 494bed5..bbe5182 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -128,7 +128,7 @@ jobs: run: | source .venv/bin/activate coverage run -m pytest --junitxml=report.xml - coverage report + coverage report --fail-under=96 coverage xml env: PIP_DISABLE_PIP_VERSION_CHECK: 1 diff --git a/pyproject.toml b/pyproject.toml index b53af97..bc997cf 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -421,7 +421,7 @@ deps = commands = coverage run -m pytest {posargs:tests} --random-order - coverage report + coverage report --fail-under=96 set_env = PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} From 770b679662c5e4ee6adcbe616d947a03423e7589 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Tue, 15 Aug 2023 12:06:34 +0600 Subject: [PATCH 56/79] CI refactored --- .github/workflows/on_push.yml | 138 +------------------------- .github/workflows/on_release.yml | 111 ++------------------- .github/workflows/on_test_release.yml | 27 ++--- docs/conf.py | 2 +- pyproject.toml | 59 ----------- 5 files changed, 25 insertions(+), 312 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index bbe5182..a20c5c5 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -5,137 +5,9 @@ on: branches-ignore: - 'refs/tags/v' -env: - PYTHON_IMAGE: 3.9 - PYTHON_PACKAGE_NAME: deker - jobs: - setup: - runs-on: ubuntu-latest - timeout-minutes: 60 - - steps: - - name: Checkout code - uses: actions/checkout@v3 - - - name: Set up Python - uses: actions/setup-python@v3 - with: - python-version: ${{ env.PYTHON_IMAGE }} - - - name: Install poetry - uses: snok/install-poetry@v1.3.4 - with: - virtualenvs-create: true - virtualenvs-in-project: true - - - name: Install dependencies - run: poetry install - - - name: Cache virtual environment - uses: actions/cache@v2 - with: - path: .venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - - linters: - needs: setup - runs-on: ubuntu-latest - steps: - - name: Checkout code - uses: actions/checkout@v3 - - - name: Set up Python - uses: actions/setup-python@v3 - with: - python-version: ${{ env.PYTHON_IMAGE }} - - - name: Load virtual environment - uses: actions/cache@v2 - with: - path: .venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - - - name: Run linters and checks - run: | - source .venv/bin/activate - isort ./${{ env.PYTHON_PACKAGE_NAME }} - black ./${{ env.PYTHON_PACKAGE_NAME }} - flake8 ./${{ env.PYTHON_PACKAGE_NAME }} - mypy ./${{ env.PYTHON_PACKAGE_NAME }} --install-types --non-interactive --config-file pyproject.toml - doc8 --config pyproject.toml ./docs/deker - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - - - name: Save linter reports - if: always() - uses: actions/upload-artifact@v2 - with: - name: linter-reports - path: report.xml - - tests: - needs: setup - runs-on: ubuntu-latest - steps: - - name: Checkout code - uses: actions/checkout@v3 - - - name: Set up Python - uses: actions/setup-python@v2 - with: - python-version: ${{ env.PYTHON_IMAGE }} - - - name: Load virtual environment - uses: actions/cache@v2 - with: - path: .venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - - - name: Run shuffled tests - run: | - source .venv/bin/activate - pytest --random-order --junitxml=tests.xml - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - - - name: Save test reports - if: always() - uses: actions/upload-artifact@v2 - with: - name: test-reports - path: tests.xml - - coverage: - needs: setup - runs-on: ubuntu-latest - steps: - - name: Checkout code - uses: actions/checkout@v3 - - - name: Set up Python - uses: actions/setup-python@v2 - with: - python-version: ${{ env.PYTHON_IMAGE }} - - - name: Load virtual environment - uses: actions/cache@v2 - with: - path: .venv - key: ${{ runner.os }}-venv-${{ env.PYTHON_IMAGE }}-${{ hashFiles('pyproject.toml', 'poetry.lock') }} - - - name: Run coverage - run: | - source .venv/bin/activate - coverage run -m pytest --junitxml=report.xml - coverage report --fail-under=96 - coverage xml - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - - - name: Save coverage reports - if: always() - uses: actions/upload-artifact@v2 - with: - name: coverage-reports - path: coverage.xml + checks: + uses: openweathermap/deker-actions/.github/workflows/checks.yml@master + with: + package-name: deker + python-version: '3.9' diff --git a/.github/workflows/on_release.yml b/.github/workflows/on_release.yml index ea6286a..d487ca4 100644 --- a/.github/workflows/on_release.yml +++ b/.github/workflows/on_release.yml @@ -6,125 +6,36 @@ on: - 'v[1-9]+.[0-9]+.[0-9]+' env: - PYTHON_IMAGE: 3.9 + PACKAGE_NAME: deker jobs: tox_tests: - runs-on: ubuntu-latest - container: - image: ghcr.io/openweathermap/deker/deker-embedded/tox:latest - env: - PACKAGE_VERSION: ${{ github.REF_NAME }} - credentials: - username: ${{ github.actor }} - password: ${{ secrets.GITHUB_TOKEN }} - steps: - - name: Set python versions - run: pyenv global 3.9 3.10 3.11 - - - name: Checkout code - uses: actions/checkout@v3 - - - name: Install tools - run: | - env - pip install tox poetry - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - - - name: Make requirements file - run: poetry export --without-hashes > requirements.txt - - - name: Run tox tests - run: | - export PIP_EXTRA_INDEX_URL=https://test.pypi.org/simple - env - tox - env: - PIP_DISABLE_PIP_VERSION_CHECK: 1 - PACKAGE_VERSION: ${{ github.REF_NAME }} + uses: openweathermap/deker-actions/.github/workflows/tox.yml@master + with: + package-name: $PACKAGE_NAME build_docs: needs: tox_tests - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - - - name: Set up Python - uses: actions/setup-python@v3 - with: - python-version: ${{ env.PYTHON_IMAGE }} - - - name: Install poetry - uses: snok/install-poetry@v1.3.4 - with: - virtualenvs-create: true - virtualenvs-in-project: true - - - name: Install dependencies - run: | - poetry install - source .venv/bin/activate - doc8 --config pyproject.toml docs/deker - cd ./docs - make html - awk 'NR >= 35 && NR <= 40' _build/html/index.html - - - name: Upload artifact - uses: actions/upload-pages-artifact@v2 - with: - path: docs/_build/html + uses: openweathermap/deker-actions/.github/workflows/docs_build.yml@master publish_docs: needs: build_docs - runs-on: ubuntu-latest - permissions: - contents: read - pages: write - id-token: write - concurrency: - group: "pages" - cancel-in-progress: false - environment: - name: github-pages - url: ${{ steps.deployment.outputs.page_url }} - steps: - - name: Deploy to GitHub Pages - uses: actions/deploy-pages@v2 - with: - github_token: ${{ secrets.GITHUB_TOKEN }} - branch: gh-pages - force: true - directory: docs/_build/html + uses: openweathermap/deker-actions/.github/workflows/docs_publish.yml@master build_sdist: - needs: build_docs + needs: [tox_tests, build_docs] name: Build source distribution - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - with: - fetch-depth: 0 - - - name: Build sdist - run: | - pip install poetry-dynamic-versioning - pip install poetry - poetry dynamic-versioning enable - poetry build -f sdist - - - uses: actions/upload-artifact@v3 - with: - path: dist/*.tar.gz + uses: openweathermap/deker-actions/.github/workflows/build.yml@master upload_pypi: - needs: [build_sdist, publish_docs] + name: Publish source distribution + needs: build_sdist runs-on: ubuntu-latest permissions: id-token: write environment: name: pypi - url: https://pypi.org/p/deker + url: https://pypi.org/p/$PACKAGE_NAME steps: - uses: actions/download-artifact@v3 diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index 9481737..715fee7 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -5,34 +5,23 @@ on: tags-ignore: - 'v[1-9]+.[0-9]+.[0-9]+' +env: + PACKAGE_NAME: deker + jobs: build_sdist: - name: Build source distribution - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - with: - fetch-depth: 0 - - - name: Build sdist - run: | - pip install poetry-dynamic-versioning - pip install poetry - poetry dynamic-versioning enable - poetry build -f sdist - - - uses: actions/upload-artifact@v3 - with: - path: dist/*.tar.gz + name: Build test source distribution + uses: openweathermap/deker-actions/.github/workflows/build.yml@master upload_test_pypi: + name: Upload test source distribution needs: build_sdist runs-on: ubuntu-latest permissions: id-token: write environment: name: testpypi - url: https://test.pypi.org/p/deker + url: https://test.pypi.org/p/$PACKAGE_NAME steps: - uses: actions/download-artifact@v3 @@ -42,7 +31,7 @@ jobs: name: artifact path: dist - - name: Publish package distributions to PyPI + - name: Publish test source distributions to Test-PyPI uses: pypa/gh-action-pypi-publish@release/v1 with: repository-url: https://test.pypi.org/legacy/ diff --git a/docs/conf.py b/docs/conf.py index a307f8c..99b6144 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -94,7 +94,7 @@ # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. -htmlhelp_basename = "Dekerdoc" +htmlhelp_basename = "deker-doc" # -- Custom Settings ------------------------------------------------------- diff --git a/pyproject.toml b/pyproject.toml index bc997cf..32f5e97 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -88,7 +88,6 @@ deepdiff = "6.3.0" pytest-mock = "3.10.0" xarray = "^2023.5.0" bandit = "1.7.5" -tox = "4.6.3" [tool.poetry.group.docs.dependencies] docutils = "0.17" @@ -400,61 +399,3 @@ exclude_lines = [ "except ModuleNotFoundError", "except Exception" ] - -[tool.tox] # tox -legacy_tox_ini = """ -[tox] -requires = - tox>=4 -env_list = {py39,py310,py311}-lint, py{39,310,311}-test - -[testenv:{py39,py310,py311}-test] -description = run unit tests -deps = - deepdiff==6.3.0 - coverage==7.1.0 - pytest==7.2.1 - pytest-sugar==0.9.6 - pytest-mock==3.10.0 - pytest-random-order==1.1.0 - xarray>=2023.5.0 - -commands = - coverage run -m pytest {posargs:tests} --random-order - coverage report --fail-under=96 - -set_env = - PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} - -[testenv:{py39,py310,py311}-lint] -ignore_base_python_conflict = true -description = run linters -deps = black==23.1.0 - Flake8-pyproject==1.2.3 - darglint==1.8.1 - doc8==0.11.2 - flake8==5.0.4 - flake8-bugbear==23.1.20 - flake8-docstrings==1.7.0 - flake8-import-order==0.18.2 - flake8-pytest-style==1.7.0 - isort==5.12.0 - mypy==1.0.0 - mypy-extensions==1.0.0 - pep8-naming==0.13.3 - bandit==1.7.5 - ssort==0.11.6 - deepdiff==6.3.0 - xarray>=2023.5.0 - -commands = ssort {posargs:deker} - isort {posargs:deker} - black {posargs:deker} - flake8 {posargs:deker} - bandit -r {posargs:deker} -c pyproject.toml - mypy {posargs:deker} --install-types --non-interactive --config-file pyproject.toml - doc8 {posargs:docs/deker} --config=pyproject.toml - -set_env = - PIP_EXTRA_INDEX_URL = {env:PIP_EXTRA_INDEX_URL} -""" From f0f34288aaac686cc61af86029b51c1fe19d062c Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Tue, 15 Aug 2023 12:07:39 +0600 Subject: [PATCH 57/79] poetry locked --- poetry.lock | 70 +---------------------------------------------------- 1 file changed, 1 insertion(+), 69 deletions(-) diff --git a/poetry.lock b/poetry.lock index 78af6ac..4f3183f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -201,17 +201,6 @@ dev = ["CacheControl[filecache,redis]", "black", "build", "cherrypy", "mypy", "p filecache = ["filelock (>=3.8.0)"] redis = ["redis (>=2.10.5)"] -[[package]] -name = "cachetools" -version = "5.3.1" -description = "Extensible memoizing collections and decorators" -optional = false -python-versions = ">=3.7" -files = [ - {file = "cachetools-5.3.1-py3-none-any.whl", hash = "sha256:95ef631eeaea14ba2e36f06437f36463aac3a096799e876ee55e5cdccb102590"}, - {file = "cachetools-5.3.1.tar.gz", hash = "sha256:dce83f2d9b4e1f732a8cd44af8e8fab2dbe46201467fc98b3ef8f269092bf62b"}, -] - [[package]] name = "certifi" version = "2023.7.22" @@ -234,17 +223,6 @@ files = [ {file = "cfgv-3.3.1.tar.gz", hash = "sha256:f5a830efb9ce7a445376bb66ec94c638a9787422f96264c98edc6bdeed8ab736"}, ] -[[package]] -name = "chardet" -version = "5.2.0" -description = "Universal encoding detector for Python 3" -optional = false -python-versions = ">=3.7" -files = [ - {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"}, - {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"}, -] - [[package]] name = "charset-normalizer" version = "3.2.0" @@ -1571,25 +1549,6 @@ files = [ [package.extras] plugins = ["importlib-metadata"] -[[package]] -name = "pyproject-api" -version = "1.5.3" -description = "API to interact with the python pyproject.toml based projects" -optional = false -python-versions = ">=3.7" -files = [ - {file = "pyproject_api-1.5.3-py3-none-any.whl", hash = "sha256:14cf09828670c7b08842249c1f28c8ee6581b872e893f81b62d5465bec41502f"}, - {file = "pyproject_api-1.5.3.tar.gz", hash = "sha256:ffb5b2d7cad43f5b2688ab490de7c4d3f6f15e0b819cb588c4b771567c9729eb"}, -] - -[package.dependencies] -packaging = ">=23.1" -tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""} - -[package.extras] -docs = ["furo (>=2023.5.20)", "sphinx (>=7.0.1)", "sphinx-autodoc-typehints (>=1.23,!=1.23.4)"] -testing = ["covdefaults (>=2.3)", "importlib-metadata (>=6.6)", "pytest (>=7.3.1)", "pytest-cov (>=4.1)", "pytest-mock (>=3.10)", "setuptools (>=67.8)", "wheel (>=0.40)"] - [[package]] name = "pytest" version = "7.2.1" @@ -2280,33 +2239,6 @@ files = [ {file = "tomlkit-0.11.8.tar.gz", hash = "sha256:9330fc7faa1db67b541b28e62018c17d20be733177d290a13b24c62d1614e0c3"}, ] -[[package]] -name = "tox" -version = "4.6.3" -description = "tox is a generic virtualenv management and test command line tool" -optional = false -python-versions = ">=3.7" -files = [ - {file = "tox-4.6.3-py3-none-any.whl", hash = "sha256:2946a0bb38924c3a9f9575c7fb4ca1f4c11a7c69c61592f176778892155cb50c"}, - {file = "tox-4.6.3.tar.gz", hash = "sha256:9e2c5091a117d03b583c57c4c40aecd068099c17d40520e7b165e85c19334534"}, -] - -[package.dependencies] -cachetools = ">=5.3.1" -chardet = ">=5.1" -colorama = ">=0.4.6" -filelock = ">=3.12.2" -packaging = ">=23.1" -platformdirs = ">=3.5.3" -pluggy = ">=1" -pyproject-api = ">=1.5.2" -tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""} -virtualenv = ">=20.23.1" - -[package.extras] -docs = ["furo (>=2023.5.20)", "sphinx (>=7.0.1)", "sphinx-argparse-cli (>=1.11.1)", "sphinx-autodoc-typehints (>=1.23.2,!=1.23.4)", "sphinx-copybutton (>=0.5.2)", "sphinx-inline-tabs (>=2023.4.21)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"] -testing = ["build[virtualenv] (>=0.10)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.1.1)", "devpi-process (>=0.3.1)", "diff-cover (>=7.6)", "distlib (>=0.3.6)", "flaky (>=3.7)", "hatch-vcs (>=0.3)", "hatchling (>=1.17.1)", "psutil (>=5.9.5)", "pytest (>=7.3.2)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)", "pytest-xdist (>=3.3.1)", "re-assert (>=1.1)", "time-machine (>=2.10)", "wheel (>=0.40)"] - [[package]] name = "tqdm" version = "4.66.0" @@ -2477,4 +2409,4 @@ xarray = ["xarray"] [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "cc73f98471f387b716e0aada48b265864e094b86ec35abfbbfe8214bfbf8d4a1" +content-hash = "aff954a808fa756325c0c6839788d90591777b63a89615615ff57e3fd8c49a16" From ab086bb08eec5e67549e9fc804eee2eff6d600eb Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Tue, 15 Aug 2023 14:16:30 +0600 Subject: [PATCH 58/79] min-coverage added --- .github/workflows/on_push.yml | 1 + .github/workflows/on_release.yml | 1 + 2 files changed, 2 insertions(+) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index a20c5c5..55b0e5f 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -11,3 +11,4 @@ jobs: with: package-name: deker python-version: '3.9' + min-coverage: 96 diff --git a/.github/workflows/on_release.yml b/.github/workflows/on_release.yml index d487ca4..ca9fe36 100644 --- a/.github/workflows/on_release.yml +++ b/.github/workflows/on_release.yml @@ -13,6 +13,7 @@ jobs: uses: openweathermap/deker-actions/.github/workflows/tox.yml@master with: package-name: $PACKAGE_NAME + min-coverage: 96 build_docs: needs: tox_tests From b962b9028a78813f2b2e998327c25a34c936beaa Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Tue, 15 Aug 2023 18:21:35 +0600 Subject: [PATCH 59/79] release flow fix --- .github/workflows/on_release.yml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/on_release.yml b/.github/workflows/on_release.yml index ca9fe36..5de87d5 100644 --- a/.github/workflows/on_release.yml +++ b/.github/workflows/on_release.yml @@ -19,18 +19,18 @@ jobs: needs: tox_tests uses: openweathermap/deker-actions/.github/workflows/docs_build.yml@master - publish_docs: - needs: build_docs - uses: openweathermap/deker-actions/.github/workflows/docs_publish.yml@master - build_sdist: needs: [tox_tests, build_docs] name: Build source distribution uses: openweathermap/deker-actions/.github/workflows/build.yml@master + publish_docs: + needs: [build_docs, build_sdist] + uses: openweathermap/deker-actions/.github/workflows/docs_publish.yml@master + upload_pypi: name: Publish source distribution - needs: build_sdist + needs: [build_docs, build_sdist] runs-on: ubuntu-latest permissions: id-token: write From 3fb694493a9f4a36cbf0bc034fe9f33308a11f84 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 17 Aug 2023 19:28:59 +0600 Subject: [PATCH 60/79] README refactored + codecov badge --- README.md | 117 +++++++++++++++++++++--------------------------------- 1 file changed, 45 insertions(+), 72 deletions(-) diff --git a/README.md b/README.md index 3847483..635ef70 100644 --- a/README.md +++ b/README.md @@ -1,26 +1,24 @@ # Deker + ![image](docs/deker/images/logo_50.png) -[![made-with-python](https://img.shields.io/badge/Made%20with-Python-1f425f.svg)](https://www.python.org/) -[![made-with-sphinx-doc](https://img.shields.io/badge/Made%20with-Sphinx-1f425f.svg)](https://www.sphinx-doc.org/) -[![PRs Welcome](https://img.shields.io/badge/PRs-welcome-brightgreen.svg?style=flat-square)](http://makeapullrequest.com) +[![PyPI version shields.io](https://img.shields.io/pypi/v/deker.svg?color=0)](https://pypi.python.org/pypi/deker/) +[![PyPI pyversions](https://img.shields.io/pypi/pyversions/deker.svg)](https://pypi.python.org/pypi/deker/) +[![GitHub license](https://badgen.net/github/license/openweathermap/deker)](https://github.com/openweathermap/deker/blob/main/LICENSE) +[![codecov](https://codecov.io/gh/openweathermap/deker/branch/main/graph/badge.svg?token=Z5PA8JKSXW)](https://codecov.io/gh/openweathermap/deker) +[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) -[![PyPI pyversions](https://img.shields.io/pypi/pyversions/deker.svg)](https://pypi.python.org/pypi/deker/) -[![PyPI version shields.io](https://img.shields.io/pypi/v/deker.svg)](https://pypi.python.org/pypi/deker/) -[![GitHub license](https://badgen.net/github/license/openweathermap/deker)](https://github.com/openweathermap/deker/blob/main/LICENSE) -[![pipeline](https://github.com/openweathermap/deker/actions/workflows/on_release.yml/badge.svg)](https://github.com/openweathermap/deker/actions/workflows/on_release.yml) -[![docs](https://github.com/openweathermap/deker/actions/workflows/on_release.yml/badge.svg)](https://github.com/openweathermap/deker/actions/workflows/on_release.yml) -**Deker** is pure Python implementation of petabyte-scale highly parallel data storage engine for +Deker is pure Python implementation of petabyte-scale highly parallel data storage engine for multidimensional arrays. Deker name comes from term *dekeract*, the [10-cube](https://en.wikipedia.org/wiki/10-cube). Deker was made with the following major goals in mind: - * provide intuitive interface for storing and accessing **huge data arrays** - * support **arbitrary number of data dimensions** - * be **thread and process safe** and as **lean on RAM** use as possible +* provide intuitive interface for storing and accessing **huge data arrays** +* support **arbitrary number of data dimensions** +* be **thread and process safe** and as **lean on RAM** use as possible Deker empowers users to store and access a wide range of data types, virtually anything that can be represented as arrays, like **geospacial data**, **satellite images**, **machine learning models**, @@ -33,85 +31,60 @@ dimensions and provides under the hood mechanisms to **partition** huge amounts ## Features * **Open source** under GPL 3.0 -* Scalable storage of huge virtual arrays via **tiling** +* Scalabale storage of huge virtual arrays via **tiling** * **Parallel processing** of virtual array tiles -* Own **locking** mechanism enabling arrays parallel read and write +* Own **locking** mechanism enabling virtual arrays parallel read and write * Array level **metadata attributes** * **Fancy data slicing** using timestamps and named labels -* Support for industry standard [NumPy](https://numpy.org/doc/stable/), [pandas](https://pandas.pydata.org/docs/) and -[Xarray](https://docs.xarray.dev/en/stable/) +* Support for industry standard [NumPy](https://numpy.org/doc/stable/), + [pandas](https://pandas.pydata.org/docs/) and [Xarray](https://docs.xarray.dev/en/stable/) * Storage level data **compression and chunking** (via HDF5) - ## Code and Documentation Open source implementation of Deker storage engine is published at - * https://github.com/openweathermap/deker +* https://github.com/openweathermap/deker API documentation and tutorials for the current release could be found at - * https://docs.deker.io - - -## Installation +* https://docs.deker.io -> **Apple Silicon (M series CPU)** -> -> Deker uses NumPy, and some NumPy types are unsupported on current NumPy arm64 version. So if you -> want to use Deker library on Apple Silicon (M series CPU), you have to install x86_64 version of -> Python using -> [Rosetta](https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment) -> x86_64 to arm64 dynamic binary translator. -> -> You may use the following [guide](https://sixty-north.com/blog/pyenv-apple-silicon.html) to install -> x86_64 version of Python an then switch to that version in your Deker project using ``pyenv`` and -> install Deker package as usual. - - -### Deker -``` -pip install deker -``` +## Quick Start +### Dependencies -If you wish to convert your data into [Xarray](https://docs.xarray.dev/en/stable/getting-started-guide/installing.html) -or pandas *(or even some other)* objects: +Minimal Python version for Deker is 3.9. -``` -pip install deker[xarray] -``` +Deker depends on the following third-party packages: -Or you can install them separately:: -``` -pip install deker -pip install xarray -``` +* `numpy` >= 1.18 +* `attrs` >= 23.1.0 +* `tqdm` >= 4.64.1 +* `psutil` >= 5.9.5 +* `h5py` >= 3.8.0 +* `hdf5plugin` >= 4.0.1 -### Interactive Shell +Also please not that for flexibility few internal Deker components are published as separate +packages: -``deker-shell`` is an interactive environment that enables you to manage and access Deker storage -in a convenient way. It requires ``deker`` package to be installed manually before use as described -above. +* [`deker-local-adapters`](https://github.com/openweathermap/deker-local-adapters) +* [`deker-tools`](https://github.com/openweathermap/deker-tools) -To install interactive shell package -``` -pip install deker deker-shell -``` +### Install -### Deker Tools +To install Deker run: -``deker-tools`` is an out-of-box battery which provides several useful tools and utilities to work -with Deker data. You may find this package useful in projects, even if they are not related to -Deker. + ```bash + pip install deker + ``` +Please refer to documentation for advanced topics such as running on Apple silicone or using Xarray +with Deker API. -To install Deker tools package: -``` -pip install deker-tools -``` +### First Steps +Now you can write simple script to jump into Deker development: -## Usage ```python from deker import Client, ArraySchema, DimensionSchema, TimeDimensionSchema from datetime import datetime, timedelta, timezone @@ -120,7 +93,7 @@ import numpy as np # Where all data will be kept DEKER_URI = "file:///tmp/deker" -# Define dimension schemas +# Define 3-dimensional schema with to numeric and one time dimension dimensions = [ DimensionSchema(name="y", size=128), DimensionSchema(name="x", size=128), @@ -132,20 +105,20 @@ dimensions = [ ) ] -# Define array schema with dtype and dimensions +# Define array schema with float dtype and dimensions array_schema = ArraySchema(dtype=float, dimensions=dimensions) # Instantiate client using context manager with Client(DEKER_URI) as client: # Create collection - collection = client.create_collection("FIRST COLLECTION", array_schema) + collection = client.create_collection("my_collection", array_schema) - # Create array (You can pass primary and/or custom attributes defined in schema here) + # Create array array = collection.create() - # Write data + # Write some data array[:].update(np.ones(shape=array.shape)) - # Read data + # And read the data back data = array[:].read() ``` From 8e0ccde745eb3b0edb6a331ef7d4bb5d44513304 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 17 Aug 2023 19:47:15 +0600 Subject: [PATCH 61/79] codecov badge for main brunch --- README.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/README.md b/README.md index 635ef70..40c5a2b 100644 --- a/README.md +++ b/README.md @@ -5,10 +5,9 @@ [![PyPI version shields.io](https://img.shields.io/pypi/v/deker.svg?color=0)](https://pypi.python.org/pypi/deker/) [![PyPI pyversions](https://img.shields.io/pypi/pyversions/deker.svg)](https://pypi.python.org/pypi/deker/) [![GitHub license](https://badgen.net/github/license/openweathermap/deker)](https://github.com/openweathermap/deker/blob/main/LICENSE) -[![codecov](https://codecov.io/gh/openweathermap/deker/branch/main/graph/badge.svg?token=Z5PA8JKSXW)](https://codecov.io/gh/openweathermap/deker) +[![codecov](https://codecov.io/gh/openweathermap/deker/branch/main/graph/badge.svg?token=Z040BQWIOR)](https://codecov.io/gh/openweathermap/deker) [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) - Deker is pure Python implementation of petabyte-scale highly parallel data storage engine for multidimensional arrays. 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@@ -36,6 +36,9 @@ classifiers = [ [tool.poetry.extras] xarray = ["xarray"] +server-adapters = ["deker-server-adapters"] +shell = ["deker-shell"] +all = ["deker-shell", "deker-server-adapters", "xarray"] [tool.poetry-dynamic-versioning] vcs = "git" @@ -43,15 +46,15 @@ style = "semver" metadata = false [[tool.poetry.source]] -name = "testpypi" +name = "PyPI" +priority = "primary" + +[[tool.poetry.source]] +name = "TestPyPI" url = "https://test.pypi.org/simple/" priority = "supplemental" - #################### - ### DEPENDENCIES ### - #################### - [tool.poetry.dependencies] python = "^3.9" numpy = "^1.18" @@ -61,7 +64,10 @@ tqdm = "^4.64.1" psutil = "^5.9.5" xarray = {version = "^2023.5.0", optional = true} #deker-local-adapters = "1.0.1" -deker-local-adapters = { version = "1.0.1b", source = "testpypi" } +deker-local-adapters = {version = "^1.0.1b2", source = "TestPyPI"} +#deker-server-adapters = "^1.0.0" +deker-server-adapters = {version = "^1.0.0rc0", source = "TestPyPI"} +deker-shell = { version = "^1.0.0", optional = true } [tool.poetry.group.dev.dependencies] black = "23.1.0" @@ -86,8 +92,9 @@ pytest-random-order = "1.1.0" ssort = "0.11.6" deepdiff = "6.3.0" pytest-mock = "3.10.0" -xarray = "^2023.5.0" bandit = "1.7.5" +xarray = "^2023.5.0" + [tool.poetry.group.docs.dependencies] docutils = "0.17" From 847f4666e2be8f7ac83809e37d707493da4e0ce5 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 17 Aug 2023 21:56:32 +0600 Subject: [PATCH 64/79] poetry lock --- poetry.lock | 2662 +++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 2662 insertions(+) create mode 100644 poetry.lock diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..7f84b62 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,2662 @@ +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. + +[[package]] +name = "alabaster" +version = "0.7.13" +description = "A configurable sidebar-enabled Sphinx theme" +optional = false 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(>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] + +[extras] +all = ["deker-server-adapters", "deker-shell", "xarray"] +server-adapters = ["deker-server-adapters"] +shell = ["deker-shell"] +xarray = ["xarray"] + +[metadata] +lock-version = "2.0" +python-versions = "^3.9" +content-hash = "73502e8943bbc765ed8084ab21542194196a28c56982eac29524d38e41df6c4a" From d732025f26ccfbb31790a3c35f69b816e7798640 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 17 Aug 2023 22:09:25 +0600 Subject: [PATCH 65/79] deps fixed --- pyproject.toml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 573cb7f..161342b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -65,8 +65,8 @@ psutil = "^5.9.5" xarray = {version = "^2023.5.0", optional = true} #deker-local-adapters = "1.0.1" deker-local-adapters = {version = "^1.0.1b2", source = "TestPyPI"} -#deker-server-adapters = "^1.0.0" -deker-server-adapters = {version = "^1.0.0rc0", source = "TestPyPI"} +#deker-server-adapters = {version = "^1.0.0r", optional = true} +deker-server-adapters = {version = "^1.0.0rc0", optional = true, source = "TestPyPI"} deker-shell = { version = "^1.0.0", optional = true } [tool.poetry.group.dev.dependencies] From 36cacb1daee1623b9d7b3aa489cbd368418cd68b Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 17 Aug 2023 22:10:11 +0600 Subject: [PATCH 66/79] deps fixed --- poetry.lock | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/poetry.lock b/poetry.lock index 7f84b62..72d70d1 100644 --- a/poetry.lock +++ b/poetry.lock @@ -15,7 +15,7 @@ files = [ name = "anyio" version = "3.7.1" description = "High level compatibility layer for multiple asynchronous event loop implementations" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "anyio-3.7.1-py3-none-any.whl", hash = "sha256:91dee416e570e92c64041bd18b900d1d6fa78dff7048769ce5ac5ddad004fbb5"}, @@ -499,7 +499,7 @@ reference = "TestPyPI" name = "deker-server-adapters" version = "1.0.0rc0" description = "Plugin with server adapters for Deker" -optional = false +optional = true python-versions = ">=3.9,<4.0" files = [ {file = "deker_server_adapters-1.0.0rc0.tar.gz", hash = "sha256:cfa5bc35524475ffc2cc7ff6e44c0ad9677e707372ba4cdad2c0aa86bcf8ca7c"}, @@ -798,7 +798,7 @@ gitdb = ">=4.0.1,<5" name = "h11" version = "0.14.0" description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "h11-0.14.0-py3-none-any.whl", hash = "sha256:e3fe4ac4b851c468cc8363d500db52c2ead036020723024a109d37346efaa761"}, @@ -809,7 +809,7 @@ files = [ name = "h2" version = "4.1.0" description = "HTTP/2 State-Machine based protocol implementation" -optional = false +optional = true python-versions = ">=3.6.1" files = [ {file = "h2-4.1.0-py3-none-any.whl", hash = "sha256:03a46bcf682256c95b5fd9e9a99c1323584c3eec6440d379b9903d709476bc6d"}, @@ -878,7 +878,7 @@ dev = ["sphinx", "sphinx-rtd-theme"] name = "hpack" version = "4.0.0" description = "Pure-Python HPACK header compression" -optional = false +optional = true python-versions = ">=3.6.1" files = [ {file = "hpack-4.0.0-py3-none-any.whl", hash = "sha256:84a076fad3dc9a9f8063ccb8041ef100867b1878b25ef0ee63847a5d53818a6c"}, @@ -910,7 +910,7 @@ lxml = ["lxml"] name = "httpcore" version = "0.17.3" description = "A minimal low-level HTTP client." -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "httpcore-0.17.3-py3-none-any.whl", hash = "sha256:c2789b767ddddfa2a5782e3199b2b7f6894540b17b16ec26b2c4d8e103510b87"}, @@ -931,7 +931,7 @@ socks = ["socksio (==1.*)"] name = "httpx" version = "0.24.1" description = "The next generation HTTP client." -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "httpx-0.24.1-py3-none-any.whl", hash = "sha256:06781eb9ac53cde990577af654bd990a4949de37a28bdb4a230d434f3a30b9bd"}, @@ -955,7 +955,7 @@ socks = ["socksio (==1.*)"] name = "hyperframe" version = "6.0.1" description = "HTTP/2 framing layer for Python" -optional = false +optional = true python-versions = ">=3.6.1" files = [ {file = "hyperframe-6.0.1-py3-none-any.whl", hash = "sha256:0ec6bafd80d8ad2195c4f03aacba3a8265e57bc4cff261e802bf39970ed02a15"}, @@ -2094,7 +2094,7 @@ files = [ name = "sniffio" version = "1.3.0" description = "Sniff out which async library your code is running under" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "sniffio-1.3.0-py3-none-any.whl", hash = "sha256:eecefdce1e5bbfb7ad2eeaabf7c1eeb404d7757c379bd1f7e5cce9d8bf425384"}, @@ -2659,4 +2659,4 @@ xarray = ["xarray"] [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "73502e8943bbc765ed8084ab21542194196a28c56982eac29524d38e41df6c4a" +content-hash = "ec256f9a05df6736329b9e8c836d5a8739519e5a6366b8876b78d52d9c1ec7dc" From 67aab57efc6afc056e733cb27c15804a107bfe98 Mon Sep 17 00:00:00 2001 From: matveyvarg Date: Thu, 17 Aug 2023 18:22:22 +0200 Subject: [PATCH 67/79] server adapters docs --- docs/deker/connecting_to_server.rst | 110 ++++++++++++++++++++++++++++ docs/deker/installation.rst | 19 +++++ docs/index.rst | 2 + 3 files changed, 131 insertions(+) create mode 100644 docs/deker/connecting_to_server.rst diff --git a/docs/deker/connecting_to_server.rst b/docs/deker/connecting_to_server.rst new file mode 100644 index 0000000..0e50f6d --- /dev/null +++ b/docs/deker/connecting_to_server.rst @@ -0,0 +1,110 @@ +******************** +Connecting to Server +******************** + +To access data remotely stored on [OpenWeather](https://openweathermap.org) managed Deker server infrastructure, you need to use server adapters + +It is an original OpenWeather plugin, based on `httpx `_ +with HTTP 2.0 support that allows your local client to communicate with remote server instances of Deker. + +Deker will automatically find and initialize this plugin if it is installed in current environment. + +.. attention:: + You must install ``deker-server-adapters`` package , for details refer to the `Installation page`_ + + +Usage +========= +To use server version, you have to initialize Deker's Client with an uri which contains ``http/https`` schema. + +.. code-block:: python + + from deker import Client + client = Client("http://{url-to-deker-server}") # As simple as that + +And now the client will communicate with Deker server + +If authentication is enabled on the Deker server, you can provide credentials by adding it yo the url like this: + +.. code-block:: python + + from deker import client + client = Client("https://{username}:{password}@{url-to-deker-server}") + +Configuration +============= +Server adapters use ``httpx client`` under the hood. You can configure its behaviour by passing +keyword arguments to the ``httpx_conf`` argument of the Deker's Client + +.. code-block:: python + + import httpx + from deker import Client + + limits = httpx.Limits(max_keepalive_connections=5, max_connections=10) + client = Client("http://{url-to-deker-server}", httpx_conf={'http2': False, 'timeout': 10, 'limits': limits}) + +Full list of available config you can find at `httpx website `_ + +By default, adapters' ``httpx client`` has following settings: + +.. list-table:: + :header-rows: 1 + + * - Key + - Type + - Default Value + * - verify + - bool + - True + * - http2 + - bool + - True + * - timeout + - Optional[float] + - None + +Errors +========= + +.. py:exception:: DekerServerError(response: Response, message: str) + + Bases: :class:`DekerBaseApplicationError` + + Server error, which is raised on any non-specific ocasion (like 5xx status from server) + + :param response: Httpx Response + :param message: Message of exception + +.. py:exception:: DekerTimeoutServer + + Bases: :class:`DekerServerError` + + This exception is raised on any timeout (Httpx's Timeout exception or 504 status ) + +.. py:exception:: DekerBaseRateLimitError(message: str, limit: Optional[int], remaining: Optional[int], reset: Optional[int]) + + Bases: :class:`DekerBaseApplicationError` + + + + :param message: Exception message + :param limit: What is the limit for the user (requests per second) + :param remaining: How much is left (requests per second) + :param reset: When limits will be reset + +.. py:exception:: DekerRateLimitError + + Bases: :class:`DekerBaseRateLimitError` + + + If user's limit is exceeded + +.. py:exception:: DekerDataPointsLimitError + + Bases: :class:`DekerBaseRateLimitError` + + If requested subset exceeds quota + +.. _Installation page: installation.html + diff --git a/docs/deker/installation.rst b/docs/deker/installation.rst index 2c2410f..cf5d2bd 100755 --- a/docs/deker/installation.rst +++ b/docs/deker/installation.rst @@ -84,3 +84,22 @@ Deker. To install Deker tools package:: pip install deker-tools + +Server Adapters +=============== + +It is an original OpenWeather plugin, based on `httpx `_ +with HTTP 2.0 support that allows to your local client communicate with remote server instances of Deker. + +If you don't have Deker yet + +.. code-block:: bash + + pip install deker[server-adapters] + +If you already have installed Deker, you can simply install plugin to use it. + +.. code-block:: bash + + pip install deker-server-adapters + diff --git a/docs/index.rst b/docs/index.rst index 8ecee72..3397cab 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -8,6 +8,8 @@ Fine Tuning Interactive Shell Deker Tools + Connecting to Server + .. toctree:: :hidden: From ed29260e0b6b5dcc1c513f8606189364fce0af82 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 17 Aug 2023 22:44:07 +0600 Subject: [PATCH 68/79] readme fix --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index 40c5a2b..f309ff4 100644 --- a/README.md +++ b/README.md @@ -68,6 +68,7 @@ Also please not that for flexibility few internal Deker components are published packages: * [`deker-local-adapters`](https://github.com/openweathermap/deker-local-adapters) +* [`deker-server-adapters`](https://github.com/openweathermap/deker-server-adapters) * [`deker-tools`](https://github.com/openweathermap/deker-tools) ### Install From a8ef14d4b1199f09fe34eeac79c5092a446e7257 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 17 Aug 2023 23:28:25 +0600 Subject: [PATCH 69/79] docs and readme fixed --- docs/deker/connecting_to_server.rst | 54 ++++++++++++++------------ docs/deker/installation.rst | 60 ++++++++++++++++++++--------- 2 files changed, 72 insertions(+), 42 deletions(-) diff --git a/docs/deker/connecting_to_server.rst b/docs/deker/connecting_to_server.rst index 0e50f6d..04ea105 100644 --- a/docs/deker/connecting_to_server.rst +++ b/docs/deker/connecting_to_server.rst @@ -2,10 +2,15 @@ Connecting to Server ******************** -To access data remotely stored on [OpenWeather](https://openweathermap.org) managed Deker server infrastructure, you need to use server adapters +.. _OpenWeather: https://openweathermap.org +.. _Installation page: installation.html + +To access remotely the data stored on OpenWeather_ managed Deker server infrastructure, you need +to use server adapters. It is an original OpenWeather plugin, based on `httpx `_ -with HTTP 2.0 support that allows your local client to communicate with remote server instances of Deker. +with HTTP 2.0 support, that allows your local client to communicate with remote OpenWeather +public server instances of Deker. Deker will automatically find and initialize this plugin if it is installed in current environment. @@ -15,26 +20,28 @@ Deker will automatically find and initialize this plugin if it is installed in c Usage ========= -To use server version, you have to initialize Deker's Client with an uri which contains ``http/https`` schema. +To use server version, you have to initialize Deker's Client with an uri which contains +``http/https`` scheme. .. code-block:: python from deker import Client client = Client("http://{url-to-deker-server}") # As simple as that -And now the client will communicate with Deker server +And now the client will communicate with Deker server. -If authentication is enabled on the Deker server, you can provide credentials by adding it yo the url like this: +If authentication is enabled on the Deker server, you can provide credentials by adding it +to the url like this: .. code-block:: python - + from deker import client client = Client("https://{username}:{password}@{url-to-deker-server}") Configuration ============= Server adapters use ``httpx client`` under the hood. You can configure its behaviour by passing -keyword arguments to the ``httpx_conf`` argument of the Deker's Client +keyword arguments to the ``httpx_conf`` parameter of the Deker's Client: .. code-block:: python @@ -42,9 +49,10 @@ keyword arguments to the ``httpx_conf`` argument of the Deker's Client from deker import Client limits = httpx.Limits(max_keepalive_connections=5, max_connections=10) - client = Client("http://{url-to-deker-server}", httpx_conf={'http2': False, 'timeout': 10, 'limits': limits}) - -Full list of available config you can find at `httpx website `_ + client = Client( + "http://{url-to-deker-server}", + httpx_conf={'http2': False, 'timeout': 10, 'limits': limits} + ) By default, adapters' ``httpx client`` has following settings: @@ -64,15 +72,19 @@ By default, adapters' ``httpx client`` has following settings: - Optional[float] - None +The full list of ``httpx`` configuration parameters you can find at `the official website`_. + +.. _the official website: https://www.python-httpx.org/api/#client + Errors ========= .. py:exception:: DekerServerError(response: Response, message: str) - + Bases: :class:`DekerBaseApplicationError` - - Server error, which is raised on any non-specific ocasion (like 5xx status from server) - + + Server error, which is raised on any non-specific occasion (like 5xx status from server) + :param response: Httpx Response :param message: Message of exception @@ -80,31 +92,25 @@ Errors Bases: :class:`DekerServerError` - This exception is raised on any timeout (Httpx's Timeout exception or 504 status ) + This exception is raised on any timeout (Httpx's Timeout exception or 504 status) .. py:exception:: DekerBaseRateLimitError(message: str, limit: Optional[int], remaining: Optional[int], reset: Optional[int]) Bases: :class:`DekerBaseApplicationError` - - :param message: Exception message - :param limit: What is the limit for the user (requests per second) - :param remaining: How much is left (requests per second) + :param limit: Requests per second limit for the user + :param remaining: How many requests per second are left :param reset: When limits will be reset .. py:exception:: DekerRateLimitError Bases: :class:`DekerBaseRateLimitError` - - If user's limit is exceeded + If user's rate limit is exceeded .. py:exception:: DekerDataPointsLimitError Bases: :class:`DekerBaseRateLimitError` If requested subset exceeds quota - -.. _Installation page: installation.html - diff --git a/docs/deker/installation.rst b/docs/deker/installation.rst index cf5d2bd..4873e82 100755 --- a/docs/deker/installation.rst +++ b/docs/deker/installation.rst @@ -40,9 +40,12 @@ Also please not that for flexibility few internal Deker components are published packages: * ``deker-local-adapters`` + * ``deker-server-adapters`` * ``deker-tools`` -To install Deker with all the previously mentioned dependencies, run:: +To install Deker run: + +.. code-block:: bash pip install deker @@ -50,56 +53,77 @@ To install Deker with all the previously mentioned dependencies, run:: Optional Packages ----------------- -Deker also supports output of its data as pandas_ or Xarray_ via the following package: +Deker also supports output of its data as Xarray_ via the following package: * ``xarray`` >= 2023.5.0 -To install it with ``xarray`` optional dependency:: +To install it with ``xarray`` optional dependency: + +.. code-block:: bash pip install deker[xarray] .. _Xarray: https://docs.xarray.dev/en/stable/getting-started-guide/installing.html -.. _pandas: https://pandas.pydata.org/getting_started.html + +Deker Tools +=========== + +``deker-tools`` is an out-of-box battery which provides several useful tools and utilities to work +with Deker data. You may find this package useful in your projects, even if they are not related to +Deker. + +To install Deker tools package, run: + +.. code-block:: bash + + pip install deker-tools Interactive Shell ================= ``deker-shell`` is an interactive environment that enables you to manage and access Deker storage -in a convenient way. It requires ``deker`` package to be installed manually before use as described +in a convenient way. It requires ``deker`` package to be installed **manually** before use as described above. -To install interactive shell package:: +To install interactive shell package, run: - pip install deker deker-shell +.. code-block:: bash + pip install deker deker-shell -Deker Tools -=========== +Or you can install it alongside with Deker by: -``deker-tools`` is an out-of-box battery which provides several useful tools and utilities to work -with Deker data. You may find this package useful in projects, even if they are not related to -Deker. +.. code-block:: bash -To install Deker tools package:: + pip install deker[shell] - pip install deker-tools Server Adapters =============== +.. _plugin: connecting_to_server.html -It is an original OpenWeather plugin, based on `httpx `_ -with HTTP 2.0 support that allows to your local client communicate with remote server instances of Deker. +It is an original OpenWeather plugin_, based on `httpx `_ +with HTTP 2.0 support, that allows your local client to communicate with remote OpenWeather +public server instances of Deker. -If you don't have Deker yet +If you don't have Deker yet, run .. code-block:: bash pip install deker[server-adapters] -If you already have installed Deker, you can simply install plugin to use it. +If you have already installed Deker, you can simply install plugin to use it by: .. code-block:: bash pip install deker-server-adapters + +Install all the options at once +================================= +You can install all the above mentioned options at once by: + +.. code-block:: bash + + pip install deker[all] From ff92db265e045a9e70e3b470f96f7f3bc1efe29f Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Thu, 17 Aug 2023 23:29:34 +0600 Subject: [PATCH 70/79] docs line length fixes --- docs/deker/installation.rst | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/deker/installation.rst b/docs/deker/installation.rst index 4873e82..80098b6 100755 --- a/docs/deker/installation.rst +++ b/docs/deker/installation.rst @@ -83,8 +83,8 @@ Interactive Shell ================= ``deker-shell`` is an interactive environment that enables you to manage and access Deker storage -in a convenient way. It requires ``deker`` package to be installed **manually** before use as described -above. +in a convenient way. It requires ``deker`` package to be installed **manually** before use as +described above. To install interactive shell package, run: From a536992b99d03d746f57f4a464e90784135aac8e Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 18 Aug 2023 04:06:06 +0600 Subject: [PATCH 71/79] readme fix --- README.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/README.md b/README.md index f309ff4..86ccedb 100644 --- a/README.md +++ b/README.md @@ -35,8 +35,7 @@ dimensions and provides under the hood mechanisms to **partition** huge amounts * Own **locking** mechanism enabling virtual arrays parallel read and write * Array level **metadata attributes** * **Fancy data slicing** using timestamps and named labels -* Support for industry standard [NumPy](https://numpy.org/doc/stable/), - [pandas](https://pandas.pydata.org/docs/) and [Xarray](https://docs.xarray.dev/en/stable/) +* Support for industry standard [NumPy](https://numpy.org/doc/stable/), [Xarray](https://docs.xarray.dev/en/stable/) * Storage level data **compression and chunking** (via HDF5) ## Code and Documentation From 154edce7528fa9c7dd6c1b985a88d0428c04ca51 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 18 Aug 2023 15:32:21 +0600 Subject: [PATCH 72/79] installation docs fix --- docs/deker/installation.rst | 2 +- docs/index.rst | 3 +-- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/docs/deker/installation.rst b/docs/deker/installation.rst index 80098b6..7141f92 100755 --- a/docs/deker/installation.rst +++ b/docs/deker/installation.rst @@ -120,7 +120,7 @@ If you have already installed Deker, you can simply install plugin to use it by: pip install deker-server-adapters -Install all the options at once +Install All at Once ================================= You can install all the above mentioned options at once by: diff --git a/docs/index.rst b/docs/index.rst index 3397cab..6161289 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -65,11 +65,10 @@ Features * Own **locking** mechanism enabling arrays parallel read and write * Array level **metadata attributes** * **Fancy data slicing** using timestamps and named labels -* Support for industry standard NumPy_, pandas_ and Xarray_ +* Support for industry standard NumPy_ and Xarray_ * Storage level data **compression and chunking** (via HDF5) .. _NumPy: https://numpy.org/doc/stable/ -.. _pandas: https://pandas.pydata.org/docs/ .. _Xarray: https://docs.xarray.dev/en/stable/ From 45d16deef16fea72cc0722589042947e3ace2460 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 18 Aug 2023 18:49:00 +0600 Subject: [PATCH 73/79] test coverage and docs --- .github/workflows/on_push.yml | 5 +++- .github/workflows/on_release.yml | 7 ++--- .github/workflows/on_test_release.yml | 5 +--- poetry.lock | 40 ++++++++++----------------- pyproject.toml | 8 ++---- 5 files changed, 25 insertions(+), 40 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 55b0e5f..0db01cb 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -6,9 +6,12 @@ on: - 'refs/tags/v' jobs: + build_docs: + uses: openweathermap/deker-actions/.github/workflows/docs_build.yml@master + checks: uses: openweathermap/deker-actions/.github/workflows/checks.yml@master with: - package-name: deker + package-name: ${{ vars.PACKAGE_NAME }} python-version: '3.9' min-coverage: 96 diff --git a/.github/workflows/on_release.yml b/.github/workflows/on_release.yml index 5de87d5..f7ab302 100644 --- a/.github/workflows/on_release.yml +++ b/.github/workflows/on_release.yml @@ -5,14 +5,11 @@ on: tags: - 'v[1-9]+.[0-9]+.[0-9]+' -env: - PACKAGE_NAME: deker - jobs: tox_tests: uses: openweathermap/deker-actions/.github/workflows/tox.yml@master with: - package-name: $PACKAGE_NAME + package-name: ${{ vars.PACKAGE_NAME }} min-coverage: 96 build_docs: @@ -36,7 +33,7 @@ jobs: id-token: write environment: name: pypi - url: https://pypi.org/p/$PACKAGE_NAME + url: https://pypi.org/p/${{ vars.PACKAGE_NAME }} steps: - uses: actions/download-artifact@v3 diff --git a/.github/workflows/on_test_release.yml b/.github/workflows/on_test_release.yml index 715fee7..7472e6c 100644 --- a/.github/workflows/on_test_release.yml +++ b/.github/workflows/on_test_release.yml @@ -5,9 +5,6 @@ on: tags-ignore: - 'v[1-9]+.[0-9]+.[0-9]+' -env: - PACKAGE_NAME: deker - jobs: build_sdist: name: Build test source distribution @@ -21,7 +18,7 @@ jobs: id-token: write environment: name: testpypi - url: https://test.pypi.org/p/$PACKAGE_NAME + url: https://test.pypi.org/p/${{ vars.PACKAGE_NAME }} steps: - uses: actions/download-artifact@v3 diff --git a/poetry.lock b/poetry.lock index 72d70d1..9883b12 100644 --- a/poetry.lock +++ b/poetry.lock @@ -341,13 +341,13 @@ files = [ [[package]] name = "click" -version = "8.1.6" +version = "8.1.7" description = "Composable command line interface toolkit" optional = false python-versions = ">=3.7" files = [ - {file = "click-8.1.6-py3-none-any.whl", hash = "sha256:fa244bb30b3b5ee2cae3da8f55c9e5e0c0e86093306301fb418eb9dc40fbded5"}, - {file = "click-8.1.6.tar.gz", hash = "sha256:48ee849951919527a045bfe3bf7baa8a959c423134e1a5b98c05c20ba75a1cbd"}, + {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"}, + {file = "click-8.1.7.tar.gz", hash = "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de"}, ] [package.dependencies] @@ -476,12 +476,12 @@ optimize = ["orjson"] [[package]] name = "deker-local-adapters" -version = "1.0.1b2" +version = "1.0.1" description = "Plugin with local adapters for deker" optional = false python-versions = ">=3.9,<4.0" files = [ - {file = "deker_local_adapters-1.0.1b2.tar.gz", hash = "sha256:ba6d5f803bb0b766b36ee7b67ecb8e369d52e31ba0a4624fd86a6ac1ec884814"}, + {file = "deker_local_adapters-1.0.1.tar.gz", hash = "sha256:d7ed69c122a132e79b557e96fdaccd554e57eacaa2feb42ac1f9a064905023c1"}, ] [package.dependencies] @@ -490,37 +490,27 @@ h5py = ">=3.8.0,<4.0.0" hdf5plugin = ">=4.0.1,<5.0.0" numpy = ">=1.18,<2.0" -[package.source] -type = "legacy" -url = "https://test.pypi.org/simple" -reference = "TestPyPI" - [[package]] name = "deker-server-adapters" -version = "1.0.0rc0" +version = "1.0.0" description = "Plugin with server adapters for Deker" optional = true python-versions = ">=3.9,<4.0" files = [ - {file = "deker_server_adapters-1.0.0rc0.tar.gz", hash = "sha256:cfa5bc35524475ffc2cc7ff6e44c0ad9677e707372ba4cdad2c0aa86bcf8ca7c"}, + {file = "deker_server_adapters-1.0.0.tar.gz", hash = "sha256:54b4929c0944a6feb84806902ea07a5136802aaca1445e354c57134ad1460b93"}, ] [package.dependencies] httpx = {version = ">=0.24.1,<0.25.0", extras = ["http2"]} -[package.source] -type = "legacy" -url = "https://test.pypi.org/simple" -reference = "TestPyPI" - [[package]] name = "deker-shell" -version = "1.0.0" +version = "1.0.1" description = "Interactive shell for Deker" optional = true -python-versions = ">=3.9" +python-versions = ">=3.9,<4.0" files = [ - {file = "deker_shell-1.0.0.tar.gz", hash = "sha256:1e913def4dea93c5ff6002fae8d9b1020b92dd7b9fade8120a697f0b5ceb75a6"}, + {file = "deker_shell-1.0.1.tar.gz", hash = "sha256:663a9557e3eaac093ace1f5e375d6188de66de0f3075cd7086e5d7058ce43cbf"}, ] [package.dependencies] @@ -2054,17 +2044,17 @@ files = [ [[package]] name = "setuptools" -version = "68.1.0" +version = "68.1.2" description = "Easily download, build, install, upgrade, and uninstall Python packages" optional = false python-versions = ">=3.8" files = [ - {file = "setuptools-68.1.0-py3-none-any.whl", hash = "sha256:e13e1b0bc760e9b0127eda042845999b2f913e12437046e663b833aa96d89715"}, - {file = "setuptools-68.1.0.tar.gz", hash = "sha256:d59c97e7b774979a5ccb96388efc9eb65518004537e85d52e81eaee89ab6dd91"}, + {file = "setuptools-68.1.2-py3-none-any.whl", hash = "sha256:3d8083eed2d13afc9426f227b24fd1659489ec107c0e86cec2ffdde5c92e790b"}, + {file = "setuptools-68.1.2.tar.gz", hash = "sha256:3d4dfa6d95f1b101d695a6160a7626e15583af71a5f52176efa5d39a054d475d"}, ] [package.extras] -docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5,<=7.1.2)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"] testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] @@ -2659,4 +2649,4 @@ xarray = ["xarray"] [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "ec256f9a05df6736329b9e8c836d5a8739519e5a6366b8876b78d52d9c1ec7dc" +content-hash = "cc04888b1ce4e0b1006ea10357b4de564d6c90de47fed8a6b92c52b47c62ae52" diff --git a/pyproject.toml b/pyproject.toml index 161342b..c288ac5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -62,12 +62,10 @@ attrs = "^23.1.0" typing-extensions = "^4.4.0" tqdm = "^4.64.1" psutil = "^5.9.5" -xarray = {version = "^2023.5.0", optional = true} -#deker-local-adapters = "1.0.1" -deker-local-adapters = {version = "^1.0.1b2", source = "TestPyPI"} -#deker-server-adapters = {version = "^1.0.0r", optional = true} -deker-server-adapters = {version = "^1.0.0rc0", optional = true, source = "TestPyPI"} +deker-local-adapters = "1.0.1" +deker-server-adapters = {version = "^1.0.0", optional = true} deker-shell = { version = "^1.0.0", optional = true } +xarray = {version = "^2023.5.0", optional = true} [tool.poetry.group.dev.dependencies] black = "23.1.0" From 42dedc276d2ee0fe1ec6a11f874f0ab9f1c6c416 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 18 Aug 2023 18:52:36 +0600 Subject: [PATCH 74/79] test coverage and docs --- .github/workflows/on_push.yml | 2 ++ pyproject.toml | 2 +- 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 0db01cb..c0735cb 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -8,6 +8,8 @@ on: jobs: build_docs: uses: openweathermap/deker-actions/.github/workflows/docs_build.yml@master + with: + python-version: '3.9' checks: uses: openweathermap/deker-actions/.github/workflows/checks.yml@master diff --git a/pyproject.toml b/pyproject.toml index c288ac5..86ef1ef 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -50,7 +50,7 @@ name = "PyPI" priority = "primary" [[tool.poetry.source]] -name = "TestPyPI" +name = "testpypi" url = "https://test.pypi.org/simple/" priority = "supplemental" From ef845d9cb3bd6ddbb61e69c64c25b035f4dc908c Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 18 Aug 2023 18:53:47 +0600 Subject: [PATCH 75/79] test coverage and docs --- .github/workflows/on_push.yml | 11 ++++++----- .github/workflows/on_release.yml | 2 ++ 2 files changed, 8 insertions(+), 5 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index c0735cb..fd082b5 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -6,14 +6,15 @@ on: - 'refs/tags/v' jobs: - build_docs: - uses: openweathermap/deker-actions/.github/workflows/docs_build.yml@master - with: - python-version: '3.9' - checks: uses: openweathermap/deker-actions/.github/workflows/checks.yml@master with: package-name: ${{ vars.PACKAGE_NAME }} python-version: '3.9' min-coverage: 96 + + build_docs: + needs: checks + uses: openweathermap/deker-actions/.github/workflows/docs_build.yml@master + with: + python-version: '3.9' diff --git a/.github/workflows/on_release.yml b/.github/workflows/on_release.yml index f7ab302..5efecad 100644 --- a/.github/workflows/on_release.yml +++ b/.github/workflows/on_release.yml @@ -15,6 +15,8 @@ jobs: build_docs: needs: tox_tests uses: openweathermap/deker-actions/.github/workflows/docs_build.yml@master + with: + python-version: '3.9' build_sdist: needs: [tox_tests, build_docs] From 71428471379c0424a7e420a0f8330a746c7ca8da Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 18 Aug 2023 19:03:42 +0600 Subject: [PATCH 76/79] test coverage and docs --- .github/workflows/on_push.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index fd082b5..3c2cb24 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -13,6 +13,7 @@ jobs: python-version: '3.9' min-coverage: 96 + build_docs: needs: checks uses: openweathermap/deker-actions/.github/workflows/docs_build.yml@master From f4a21e0e080e880b574793de7e19b36f86a6e9c0 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 18 Aug 2023 19:07:03 +0600 Subject: [PATCH 77/79] lock updated --- poetry.lock | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/poetry.lock b/poetry.lock index 9883b12..3d2cfa1 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2649,4 +2649,4 @@ xarray = ["xarray"] [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "cc04888b1ce4e0b1006ea10357b4de564d6c90de47fed8a6b92c52b47c62ae52" +content-hash = "c6e89a1f69e312422c8099412c661af19d485b9249877824c4b0dc3057503011" From 6c744ac4d24e1feb1a03b2b786c11fd7a2ed1835 Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 18 Aug 2023 19:21:38 +0600 Subject: [PATCH 78/79] build docs --- .github/workflows/on_push.yml | 16 ++++++++++------ 1 file changed, 10 insertions(+), 6 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index 3c2cb24..f720988 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -6,16 +6,20 @@ on: - 'refs/tags/v' jobs: - checks: - uses: openweathermap/deker-actions/.github/workflows/checks.yml@master +# checks: +# uses: openweathermap/deker-actions/.github/workflows/checks.yml@master +# with: +# package-name: ${{ vars.PACKAGE_NAME }} +# python-version: '3.9' +# min-coverage: 96 + + setup: + uses: openweathermap/deker-actions/.github/workflows/setup.yml@master with: - package-name: ${{ vars.PACKAGE_NAME }} python-version: '3.9' - min-coverage: 96 - build_docs: - needs: checks + needs: setup uses: openweathermap/deker-actions/.github/workflows/docs_build.yml@master with: python-version: '3.9' From 71def0f00aa78ba964b0d51e9bfe4fe6c61a8e2b Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Fri, 18 Aug 2023 19:30:44 +0600 Subject: [PATCH 79/79] ppush restored --- .github/workflows/on_push.yml | 19 ++++--------------- 1 file changed, 4 insertions(+), 15 deletions(-) diff --git a/.github/workflows/on_push.yml b/.github/workflows/on_push.yml index f720988..71bf041 100644 --- a/.github/workflows/on_push.yml +++ b/.github/workflows/on_push.yml @@ -6,20 +6,9 @@ on: - 'refs/tags/v' jobs: -# checks: -# uses: openweathermap/deker-actions/.github/workflows/checks.yml@master -# with: -# package-name: ${{ vars.PACKAGE_NAME }} -# python-version: '3.9' -# min-coverage: 96 - - setup: - uses: openweathermap/deker-actions/.github/workflows/setup.yml@master - with: - python-version: '3.9' - - build_docs: - needs: setup - uses: openweathermap/deker-actions/.github/workflows/docs_build.yml@master + checks: + uses: openweathermap/deker-actions/.github/workflows/checks.yml@master with: + package-name: ${{ vars.PACKAGE_NAME }} python-version: '3.9' + min-coverage: 96