From f2bbfbe066bf340c03ca4c3747864482435138cf Mon Sep 17 00:00:00 2001 From: Sergey Rybakov Date: Tue, 24 Sep 2024 13:31:58 +0300 Subject: [PATCH] process pool executor --- deker/subset.py | 132 +++++---- poetry.lock | 671 +++++++++++++++++++++++++--------------------- pyproject.toml | 5 +- tests/conftest.py | 3 +- 4 files changed, 429 insertions(+), 382 deletions(-) diff --git a/deker/subset.py b/deker/subset.py index 1bd2ba4..22b94c1 100644 --- a/deker/subset.py +++ b/deker/subset.py @@ -511,22 +511,21 @@ def _create_array_from_vposition(self, vpos: Tuple[int, ...]) -> Optional["Array self.logger.debug(f"Created Array from meta for v_position {vpos}: {array.id}") return array # type: ignore[return-value] + def _clear(self, array_pos: ArrayPosition) -> None: + array = self._create_array_from_vposition(array_pos.vposition) + if array: + subset = array[array_pos.bounds] + if subset.shape == array.shape: + array.delete() + else: + subset.clear() + @not_deleted @WriteVarrayLock() def clear(self) -> None: """Clear data in ``VArray`` by slice.""" - - def _clear(array_pos: ArrayPosition) -> None: - array = self._create_array_from_vposition(array_pos.vposition) - if array: - subset = array[array_pos.bounds] - if subset.shape == array.shape: - array.delete() - else: - subset.clear() - self.logger.debug(f"Trying to clear data for {self.__str__()}") - results = self.__adapter.executor.map(_clear, self.__arrays) + results = self.__adapter.executor.map(self._clear, self.__arrays) list(results) self.logger.info(f"{self!s} data cleared") @@ -542,31 +541,67 @@ def __sum_results(self, arrays_data: Iterator) -> np.ndarray: results[position] = data return results + def _read_data(self, array_pos: ArrayPosition) -> Tuple[Slice, Union[Numeric, ndarray, None]]: + array: "Array" = self._create_array_from_vposition(array_pos.vposition) + if array: + subset: Subset = array[array_pos.bounds] + result = subset.read() + else: + result = np.empty( + shape=create_shape_from_slice( + self.__array.arrays_shape, array_pos.bounds # type: ignore[attr-defined] + ), + dtype=self.__array.dtype, + ) + result.fill(self.__array.fill_value) + return array_pos.data_slice, result + @not_deleted def read(self) -> Union[Numeric, np.ndarray]: """Read data from ``VArray`` slice.""" - - def _read_data(array_pos: ArrayPosition) -> Tuple[Slice, Union[Numeric, ndarray, None]]: - array: "Array" = self._create_array_from_vposition(array_pos.vposition) - if array: - subset: Subset = array[array_pos.bounds] - result = subset.read() - else: - result = np.empty( - shape=create_shape_from_slice( - self.__array.arrays_shape, array_pos.bounds # type: ignore[attr-defined] - ), - dtype=self.__array.dtype, - ) - result.fill(self.__array.fill_value) - return array_pos.data_slice, result - self.logger.debug(f"Trying to read data from {self!s}") - arrays_data = self.__adapter.executor.map(_read_data, self.__arrays) + arrays_data = self.__adapter.executor.map(self._read_data, self.__arrays) data = self.__sum_results(arrays_data) self.logger.info(f"{self!s} data read") return data + def _update(self, array_data: ArrayPositionedData) -> None: + """If there is a need in the future to calculate Array's time dimension start value. # noqa: DAR101, D400 + + ATD - Array time dimension + VATD - VArray time dimension + vpos - v_position + + start_value = VATD.step * ATD.size * vpos[vpos.index(ATD)] + VATD.start_value + """ + from deker.arrays import Array + + array = self._create_array_from_vposition(array_data.vposition) + if not array: + custom_attributes = {} + for n, dim_schema in enumerate(self.__collection.array_schema.dimensions): + if isinstance(dim_schema, TimeDimensionSchema) and isinstance( + dim_schema.start_value, str + ): + attr_name = dim_schema.start_value[1:] + dim: TimeDimension = self.__array.dimensions[n] + pos = array_data.vposition[n] + custom_attributes[attr_name] = dim.start_value + dim.step * pos # type: ignore[operator] + + kwargs = { + "collection": self.__collection, + "adapter": self.__array_adapter, + "primary_attributes": { + "vid": self.__array.id, + "v_position": array_data.vposition, + }, + "custom_attributes": custom_attributes, + } + array = Array(**kwargs) # type: ignore[arg-type] + self.__array_adapter.create(array) + subset = array[array_data.bounds] + subset.update(array_data.data) + @not_deleted @WriteVarrayLock() def update(self, data: Data) -> None: @@ -578,43 +613,6 @@ def update(self, data: Data) -> None: :param data: new data which shall match subset slicing """ - from deker.arrays import Array - - def _update(array_data: ArrayPositionedData) -> None: - """If there is a need in the future to calculate Array's time dimension start value. # noqa: DAR101, D400 - - ATD - Array time dimension - VATD - VArray time dimension - vpos - v_position - - start_value = VATD.step * ATD.size * vpos[vpos.index(ATD)] + VATD.start_value - """ - array = self._create_array_from_vposition(array_data.vposition) - if not array: - custom_attributes = {} - for n, dim_schema in enumerate(self.__collection.array_schema.dimensions): - if isinstance(dim_schema, TimeDimensionSchema) and isinstance( - dim_schema.start_value, str - ): - attr_name = dim_schema.start_value[1:] - dim: TimeDimension = self.__array.dimensions[n] - pos = array_data.vposition[n] - custom_attributes[attr_name] = dim.start_value + dim.step * pos # type: ignore[operator] - - kwargs = { - "collection": self.__collection, - "adapter": self.__array_adapter, - "primary_attributes": { - "vid": self.__array.id, - "v_position": array_data.vposition, - }, - "custom_attributes": custom_attributes, - } - array = Array(**kwargs) # type: ignore[arg-type] - self.__array_adapter.create(array) - subset = array[array_data.bounds] - subset.update(array_data.data) - self.logger.debug(f"Trying to update data for {self!s}") if data is None: raise DekerArrayError("Updating data shall not be None") @@ -627,14 +625,14 @@ def _update(array_data: ArrayPositionedData) -> None: ArrayPositionedData(vpos, array_bounds, data[data_bounds]) for vpos, array_bounds, data_bounds in self.__arrays ] - futures = [self.__adapter.executor.submit(_update, position) for position in positions] + futures = [self.__adapter.executor.submit(self._update, position) for position in positions] exceptions = [] for future in futures: try: future.result() except Exception as e: - exceptions.append(repr(e) + "\n" + traceback.format_exc(-1)) + exceptions.append(repr(e) + "\n" + traceback.format_exc()) if exceptions: raise DekerVSubsetError( diff --git a/poetry.lock b/poetry.lock index c744ef9..f11e483 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.0 and should not be changed by hand. [[package]] name = "alabaster" @@ -13,13 +13,13 @@ files = [ [[package]] name = "anyio" -version = "4.4.0" +version = "4.6.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = true -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "anyio-4.4.0-py3-none-any.whl", hash = "sha256:c1b2d8f46a8a812513012e1107cb0e68c17159a7a594208005a57dc776e1bdc7"}, - {file = "anyio-4.4.0.tar.gz", hash = "sha256:5aadc6a1bbb7cdb0bede386cac5e2940f5e2ff3aa20277e991cf028e0585ce94"}, + {file = "anyio-4.6.0-py3-none-any.whl", hash = "sha256:c7d2e9d63e31599eeb636c8c5c03a7e108d73b345f064f1c19fdc87b79036a9a"}, + {file = "anyio-4.6.0.tar.gz", hash = "sha256:137b4559cbb034c477165047febb6ff83f390fc3b20bf181c1fc0a728cb8beeb"}, ] [package.dependencies] @@ -29,9 +29,9 @@ sniffio = ">=1.1" typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""} [package.extras] -doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] -test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] -trio = ["trio (>=0.23)"] +doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] +test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.21.0b1)"] +trio = ["trio (>=0.26.1)"] [[package]] name = "apeye" @@ -101,27 +101,27 @@ tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "p [[package]] name = "autodocsumm" -version = "0.2.12" +version = "0.2.13" description = "Extended sphinx autodoc including automatic autosummaries" optional = false python-versions = ">=3.7" files = [ - {file = "autodocsumm-0.2.12-py3-none-any.whl", hash = "sha256:b842b53c686c07a4f174721ca4e729b027367703dbf42e2508863a3c6d6c049c"}, - {file = "autodocsumm-0.2.12.tar.gz", hash = "sha256:848fe8c38df433c6635489499b969cb47cc389ed3d7b6e75c8ccbc94d4b3bf9e"}, + {file = "autodocsumm-0.2.13-py3-none-any.whl", hash = "sha256:bf4d82ea7acb3e7d9a3ad8c135e097eca1d3f0bd00800d7804127e848e66741d"}, + {file = "autodocsumm-0.2.13.tar.gz", hash = "sha256:ac5f0cf1adbe957acb136fe0d9e16c38fb74fcaefb45c148204aba26dbb12ee2"}, ] [package.dependencies] -Sphinx = ">=2.2,<8.0" +Sphinx = ">=2.2,<9.0" [[package]] name = "babel" -version = "2.15.0" +version = "2.16.0" description = "Internationalization utilities" optional = false python-versions = ">=3.8" files = [ - {file = "Babel-2.15.0-py3-none-any.whl", hash = "sha256:08706bdad8d0a3413266ab61bd6c34d0c28d6e1e7badf40a2cebe67644e2e1fb"}, - {file = "babel-2.15.0.tar.gz", hash = "sha256:8daf0e265d05768bc6c7a314cf1321e9a123afc328cc635c18622a2f30a04413"}, + {file = "babel-2.16.0-py3-none-any.whl", hash = "sha256:368b5b98b37c06b7daf6696391c3240c938b37767d4584413e8438c5c435fa8b"}, + {file = "babel-2.16.0.tar.gz", hash = "sha256:d1f3554ca26605fe173f3de0c65f750f5a42f924499bf134de6423582298e316"}, ] [package.extras] @@ -243,13 +243,13 @@ redis = ["redis (>=2.10.5)"] [[package]] name = "certifi" -version = "2024.6.2" +version = "2024.8.30" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.6" files = [ - {file = "certifi-2024.6.2-py3-none-any.whl", hash = "sha256:ddc6c8ce995e6987e7faf5e3f1b02b302836a0e5d98ece18392cb1a36c72ad56"}, - {file = "certifi-2024.6.2.tar.gz", hash = "sha256:3cd43f1c6fa7dedc5899d69d3ad0398fd018ad1a17fba83ddaf78aa46c747516"}, + {file = "certifi-2024.8.30-py3-none-any.whl", hash = "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8"}, + {file = "certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"}, ] [[package]] @@ -502,37 +502,38 @@ optimize = ["orjson"] [[package]] name = "deker-local-adapters" -version = "1.1.2b2" +version = "0.0.0" description = "Plugin with local adapters for deker" optional = false -python-versions = ">=3.9,<4.0" -files = [ - {file = "deker_local_adapters-1.1.2b2.tar.gz", hash = "sha256:8b9d78d6331483720dcc59c6df0f5ebca85e5db954caf14e8691703b27012e49"}, -] +python-versions = "^3.9" +files = [] +develop = false [package.dependencies] -deker-tools = ">=1.0.0,<2.0.0" -h5py = ">=3.8.0,<4.0.0" -hdf5plugin = ">=4.0.1,<5.0.0" -numpy = ">=1.18,<2.0" +deker-tools = "^1.0.0" +h5py = "^3.8.0" +hdf5plugin = "^4.0.1" +numpy = "^1.18" [package.source] -type = "legacy" -url = "https://test.pypi.org/simple" -reference = "testpypi" +type = "git" +url = "https://github.com/openweathermap/deker-local-adapters.git" +reference = "feature/process-pool" +resolved_reference = "446b2191ec08a84eb55f520f3f79c7669434e80b" [[package]] name = "deker-server-adapters" -version = "1.0.6" +version = "1.0.8" description = "Plugin with server adapters for Deker" optional = true python-versions = "<4.0,>=3.9" files = [ - {file = "deker_server_adapters-1.0.6.tar.gz", hash = "sha256:6de91dea92451e76176e2799bb89d7d46bdc209699169a3ee5876aa76909f70b"}, + {file = "deker_server_adapters-1.0.8.tar.gz", hash = "sha256:098c4261322d2bd300ff496ba6eeb5458f83dc9da58b2545c72bcf5f87582f95"}, ] [package.dependencies] -httpx = {version = ">=0.24.1,<0.25.0", extras = ["http2"]} +httpx = ">=0.27.0,<0.28.0" +pytest-httpx = ">=0.30.0,<0.31.0" [[package]] name = "deker-shell" @@ -617,13 +618,13 @@ files = [ [[package]] name = "domdf-python-tools" -version = "3.8.1" +version = "3.9.0" description = "Helpful functions for Python 🐍 🛠️" optional = false python-versions = ">=3.6" files = [ - {file = "domdf_python_tools-3.8.1-py3-none-any.whl", hash = "sha256:9821d76505e16c0fab60b37be90b8acf401c9604f7119cf6bce314f848461c7e"}, - {file = "domdf_python_tools-3.8.1.tar.gz", hash = "sha256:f45e34cf4d3363af59c32da28a9de9480ed916eff06bd0cf9a1644b6b460fb88"}, + {file = "domdf_python_tools-3.9.0-py3-none-any.whl", hash = "sha256:4e1ef365cbc24627d6d1e90cf7d46d8ab8df967e1237f4a26885f6986c78872e"}, + {file = "domdf_python_tools-3.9.0.tar.gz", hash = "sha256:1f8a96971178333a55e083e35610d7688cd7620ad2b99790164e1fc1a3614c18"}, ] [package.dependencies] @@ -655,13 +656,13 @@ sphinx = ["sphinx (>=3.2.0)", "sphinx-jinja2-compat (>=0.1.1)", "sphinx-toolbox [[package]] name = "exceptiongroup" -version = "1.2.1" +version = "1.2.2" description = "Backport of PEP 654 (exception groups)" optional = false python-versions = ">=3.7" files = [ - {file = "exceptiongroup-1.2.1-py3-none-any.whl", hash = "sha256:5258b9ed329c5bbdd31a309f53cbfb0b155341807f6ff7606a1e801a891b29ad"}, - {file = "exceptiongroup-1.2.1.tar.gz", hash = "sha256:a4785e48b045528f5bfe627b6ad554ff32def154f42372786903b7abcfe1aa16"}, + {file = "exceptiongroup-1.2.2-py3-none-any.whl", hash = "sha256:3111b9d131c238bec2f8f516e123e14ba243563fb135d3fe885990585aa7795b"}, + {file = "exceptiongroup-1.2.2.tar.gz", hash = "sha256:47c2edf7c6738fafb49fd34290706d1a1a2f4d1c6df275526b62cbb4aa5393cc"}, ] [package.extras] @@ -669,19 +670,19 @@ test = ["pytest (>=6)"] [[package]] name = "filelock" -version = "3.14.0" +version = "3.16.1" description = "A platform independent file lock." optional = false python-versions = ">=3.8" files = [ - {file = "filelock-3.14.0-py3-none-any.whl", hash = "sha256:43339835842f110ca7ae60f1e1c160714c5a6afd15a2873419ab185334975c0f"}, - {file = "filelock-3.14.0.tar.gz", hash = "sha256:6ea72da3be9b8c82afd3edcf99f2fffbb5076335a5ae4d03248bb5b6c3eae78a"}, + {file = "filelock-3.16.1-py3-none-any.whl", hash = "sha256:2082e5703d51fbf98ea75855d9d5527e33d8ff23099bec374a134febee6946b0"}, + {file = "filelock-3.16.1.tar.gz", hash = "sha256:c249fbfcd5db47e5e2d6d62198e565475ee65e4831e2561c8e313fa7eb961435"}, ] [package.extras] -docs = ["furo (>=2023.9.10)", "sphinx 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hash = "sha256:03a46bcf682256c95b5fd9e9a99c1323584c3eec6440d379b9903d709476bc6d"}, - {file = "h2-4.1.0.tar.gz", hash = "sha256:a83aca08fbe7aacb79fec788c9c0bac936343560ed9ec18b82a13a12c28d2abb"}, -] - -[package.dependencies] -hpack = ">=4.0,<5" -hyperframe = ">=6.0,<7" - [[package]] name = "h5py" version = "3.11.0" @@ -902,17 +888,6 @@ h5py = "*" dev = ["sphinx", "sphinx-rtd-theme"] test = ["blosc2 (>=2.5.1)", "blosc2-grok (>=0.2.2)"] -[[package]] -name = "hpack" -version = "4.0.0" -description = "Pure-Python HPACK header compression" -optional = true -python-versions = ">=3.6.1" -files = [ - {file = "hpack-4.0.0-py3-none-any.whl", hash = "sha256:84a076fad3dc9a9f8063ccb8041ef100867b1878b25ef0ee63847a5d53818a6c"}, - {file = "hpack-4.0.0.tar.gz", hash = "sha256:fc41de0c63e687ebffde81187a948221294896f6bdc0ae2312708df339430095"}, -] - [[package]] name = "html5lib" version = "1.1" @@ -936,40 +911,40 @@ lxml = ["lxml"] [[package]] name = "httpcore" -version = "0.17.3" +version = "1.0.5" 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description = "Backport of pathlib-compatible object wrapper for zip files" optional = false python-versions = ">=3.8" files = [ - {file = "zipp-3.19.2-py3-none-any.whl", hash = "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"}, - {file = "zipp-3.19.2.tar.gz", hash = "sha256:bf1dcf6450f873a13e952a29504887c89e6de7506209e5b1bcc3460135d4de19"}, + {file = "zipp-3.20.2-py3-none-any.whl", hash = "sha256:a817ac80d6cf4b23bf7f2828b7cabf326f15a001bea8b1f9b49631780ba28350"}, + {file = "zipp-3.20.2.tar.gz", hash = "sha256:bc9eb26f4506fda01b81bcde0ca78103b6e62f991b381fec825435c836edbc29"}, ] [package.extras] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"] +cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] -test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs 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-deker-local-adapters = { version = "^1.1.2b-2", source = "testpypi", allow-prereleases = true } +#deker-local-adapters = { version = "^1.1.2b-2", source = "testpypi", allow-prereleases = true } +#deker-local-adapters = {path = "/home/serge/owm/deker/deker-local-adapters", develop = false} + +deker-local-adapters = {git = "https://github.com/openweathermap/deker-local-adapters.git", branch="feature/process-pool"} [tool.poetry.group.dev.dependencies] black = "23.1.0" diff --git a/tests/conftest.py b/tests/conftest.py index a7a2f4a..de64db9 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -3,7 +3,7 @@ import platform import shutil -from concurrent.futures import ThreadPoolExecutor +from concurrent.futures import ProcessPoolExecutor, ThreadPoolExecutor from multiprocessing import cpu_count from pathlib import Path from random import choices @@ -114,6 +114,7 @@ def client( :param workers: Number of workers for pool """ with Client( + # executor=ProcessPoolExecutor(), uri=str(embedded_uri(root_path)), workers=workers, loglevel="ERROR",