Repositories list

• protein_set_transformer

  Public
  Protein Set Transformer (PST) framework for training protein-language-model-based genome language models. Inference is possible for viral genomes using our pretrained viral foundation model.

  Jupyter Notebook

  •

  MIT License

  •3•5•1•0•Updated Jan 24, 2025Jan 24, 2025

• V-Score-Search

  Public
  Searchable Database for V-Scores from VOG, PHROG, KEGG, eggNOG, and Pfam

  JavaScript

  •1•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• Prophage-DB

  Public
  Prophage-DB scripts for generating figures

  Jupyter Notebook

  •1•3•0•0•Updated Nov 15, 2024Nov 15, 2024

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •3.4k•0•0•0•Updated Sep 22, 2021Sep 22, 2021