Repositories list

• Lectures

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Feb 27, 2025Feb 27, 2025

• variant_calling

  Public
  Python

  •0•1•0•1•Updated Jan 14, 2025Jan 14, 2025

• euler_profiles

  Public
  Python

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• RNA_variant_calling

  Public
  Calling variants from DNA- and RNA-seq

  Python

  •0•1•0•0•Updated Aug 15, 2024Aug 15, 2024

• pangenome_KIT

  Public
  Python

  •0•3•0•0•Updated Jul 25, 2024Jul 25, 2024

• pangenome_molQTL

  Public
  Python

  •0•4•0•0•Updated Dec 14, 2023Dec 14, 2023

• superpangenome_construction

  Public
  Python

  •

  MIT License

  •4•13•2•0•Updated May 3, 2023May 3, 2023

• .github

  Public
  Learn more about the work we do

  0•0•0•0•Updated Apr 28, 2023Apr 28, 2023

• Low_pass_imputation

  Public
  Repository including scripts and workflows for "Size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle"

  Python

  •1•1•0•0•Updated Mar 7, 2023Mar 7, 2023

• bovine-assembly

  Public
  bovine assembly central repo

  Jupyter Notebook

  •

  MIT License

  •1•8•1•0•Updated Jul 29, 2022Jul 29, 2022

• bovine-graphs

  Public
  Integrate multiple genome assemblies into a pangenome graph

  bioinformaticsgenomicsgraphs+ 2pangenometranscriptomic

  Python

  •

  MIT License

  •6•32•2•0•Updated Jun 9, 2022Jun 9, 2022

• Reference_assembly_choice

  Public
  Repository including scripts and workflows for "Investigating the impact of reference assembly choice on genomic analyses in a cattle breed"

  bioinformaticsgenomicsreference-genome

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated May 3, 2021May 3, 2021