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@BioinformaticsToolsmith The Bioinformatics Toolsmith Laboratory

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    15 repositories

    • Look4LTRs

      Public
      Long Terminal Repeat Retrotransposon detection tool capable of finding recently nested LTR RTs de novo.
      C++
      •
      Other
      •1•3•2•0•Updated Nov 18, 2024Nov 18, 2024

    • Red

      Public
      Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
      C++
      •8•15•3•1•Updated Apr 24, 2024Apr 24, 2024

    • Identity

      Public
      C++
      •
      Other
      •3•34•20•1•Updated Feb 12, 2024Feb 12, 2024

    • EnhancerTracker

      Public
      A computation tool for assessing the similarity among three sequences taking into account their enhancer activities
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Dec 27, 2023Dec 27, 2023

    • MetricLearning

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 13, 2023Jun 13, 2023

    • LtrDetector

      Public
      C++
      •4•17•4•1•Updated Jun 21, 2022Jun 21, 2022

    • IdentityData

      Public
      Data for Identity and MeShClust v3.0
      Other
      •0•0•0•0•Updated May 5, 2022May 5, 2022

    • MeShClust2

      Public
      MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
      bioinformaticssequence-clusteringalignment-freealignment-free-algorithmbioinformatics-tool
      C++
      •1•14•0•0•Updated Jan 14, 2022Jan 14, 2022

    • MeShClust

      Public
      MeShClust: an intelligent tool for clustering DNA sequences
      bioinformaticsclusteringsequence-clustering
      C++
      •12•37•8•1•Updated Jan 14, 2022Jan 14, 2022

    • MsDetector

      Public
      This is a tool for finding micro satellites in a chromosome.
      bioinformaticscpprepeatstoolsatellite
      0•0•0•0•Updated Jun 28, 2019Jun 28, 2019

    • RedPipeline

      Public
      A pipeline for detecting and classifying repeats
      Python
      •0•0•0•0•Updated Jun 14, 2019Jun 14, 2019

    • FASTCAR

      Public
      Fast and Accurate Search Tool for Classification And Regression in global sequence similarity
      bioinformaticsalignment-free
      C++
      •2•3•1•0•Updated May 14, 2019May 14, 2019

    • Look4TRs

      Public
      Look4TRs: A de-novo tool for detecting simple tandem repeats using self-supervised hidden Markov models
      C++
      •1•2•0•0•Updated May 6, 2019May 6, 2019

    • HebbPlot

      Public
      Perl
      •0•1•1•0•Updated Apr 15, 2018Apr 15, 2018

    • Alignment-Free-Kmer-Statistics

      Public
      Supplementary data for "A survey and evaluations of histogram-based statistics in alignment-free sequence comparison"
      bioinformaticsalignment-free
      C++
      •1•4•0•0•Updated Oct 13, 2017Oct 13, 2017