Repositories list

• cellxgene-cell-reporter

  Public
  Reports Cell Ontology terms referenced within CellxGene

  Python

  •0•0•0•0•Updated Jan 5, 2025Jan 5, 2025

• human-neocortex-cge-derived-interneurons

  Public
  Taxonomy of cge derived interneurons in the human neocortex, facilitated by Taxonomy Development Tools.

  HTML

  •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

• human-neocortex-deep-layer-excitatory-neurons

  Public
  Taxonomy of deep layer excitatory neurons in the human neocortex, facilitated by Taxonomy Development Tools.

  HTML

  •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

• human-neocortex-it-projecting-excitatory-neurons

  Public
  Taxonomy of IT projecting excitatory neurons in the human neocortex, facilitated by Taxonomy Development Tools.

  HTML

  •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

• human-neocortex-mge-derived-interneurons

  Public
  Taxonomy of MGE derived interneurons in the human neocortex, facilitated by Taxonomy Development Tools.

  HTML

  •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

• human-neocortex-non-neuronal-cells

  Public
  Taxonomy of non-neuronal cells in the human neocortex, facilitated by Taxonomy Development Tools.

  HTML

  •0•0•0•1•Updated Jan 3, 2025Jan 3, 2025

• tdt_web_portal

  Public
  TDT dashboard

  TypeScript

  •

  MIT License

  •432•0•0•0•Updated Dec 23, 2024Dec 23, 2024

• whole_mouse_brain_ontology

  Public
  A data-driven cell-type ontology of the whole mouse brain.

  Python

  •

  Apache License 2.0

  •0•0•15•0•Updated Dec 20, 2024Dec 20, 2024

• CL_KG

  Public
  Building a Cell Ontology Knowledge-Base from data, and LLMs

  Python

  •

  Apache License 2.0

  •0•0•13•2•Updated Dec 20, 2024Dec 20, 2024

• cl_kg_reporter

  Public
  A utility for generating TSV reports with dataset summaries and statistics from the CL_KG knowledge graph, programmatically accessed and committed to GitHub.

  0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• taxonomy-development-tools-cloud

  Public
  Web hosted taxonomy development tools backend to build and edit Cell Annotation Schema taxonomies.

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

• CellMark

  Public
  Makefile

  •1•1•6•0•Updated Dec 12, 2024Dec 12, 2024

• cl_kg_helper

  Public
  Makefile

  •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

• cell-annotation-schema

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•5•0•Updated Dec 10, 2024Dec 10, 2024

• CellMetaFinder

  Public
  0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• Cellular-Semantics.github.io

  Public
  Cellular Semantics organisation web page

  HTML

  •

  MIT License

  •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• .github

  Public
  0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

• cas_linkml_notebooks

  Public
  A set of notebooks for experiments

  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• LLM_Markers

  Public
  0•0•2•0•Updated Oct 4, 2024Oct 4, 2024

• obask_demo_pipeline

  Public
  Python

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• lung_demo

  Public
  Python

  •0•0•1•0•Updated Sep 13, 2024Sep 13, 2024

• MapMyCells_scratch

  Public
  scratch repo for working on map may cells to CAS

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 30, 2024Jul 30, 2024

• CL_Markers_Mappings

  Public
  Maps gene markers in CL to various external databases

  Python

  •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• gut_demo

  Public
  Python

  •0•0•0•0•Updated Jun 25, 2024Jun 25, 2024

• OntoGPT-testing

  Public
  0•0•0•0•Updated May 22, 2024May 22, 2024

• whole_human_brain_ontology

  Public
  A data-driven cell-type ontology of the human brain.

  Python

  •

  Apache License 2.0

  •0•0•4•0•Updated May 2, 2024May 2, 2024

• ontology_editor_training

  Public
  A collection of ontology editor training materials

  Makefile

  •6•0•0•0•Updated Apr 13, 2023Apr 13, 2023