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    44 repositories

    • MetaPath_Analysis

      Public
      Tool for finding genes related to a gene set using patterns of connectivity meta path features in heterogeneous networks
      Python
      •
      Other
      •0•1•0•4•Updated Oct 3, 2023Oct 3, 2023

    • platform

      Public
      Web services and client for the KnowEnG platform
      knoweng-platform
      Python
      •
      MIT License
      •1•2•0•10•Updated Aug 11, 2023Aug 11, 2023

    • KN_Builder

      Public
      Fetch and parse source files to construct KnowEnG Knowledge Network
      Python
      •
      Other
      •1•1•0•1•Updated Oct 4, 2022Oct 4, 2022

    • DRaWR

      Public
      Discriminative Random Walk with Restart
      R
      •
      Other
      •4•6•0•0•Updated Mar 30, 2022Mar 30, 2022

    • ProGENI

      Public
      Prioritization of Genes Enhanced with Network Information
      Python
      •
      Other
      •5•5•0•1•Updated May 15, 2021May 15, 2021

    • GeneSet_Characterization_Pipeline

      Public
      Ranks a user supplied gene set against KnowEnG's gene sets collection
      knoweng-platform
      Python
      •
      Other
      •6•3•0•0•Updated Mar 27, 2021Mar 27, 2021

    • Data_Cleanup_Pipeline

      Public
      Maps gene-label row names of a spreadsheet to Ensembl names and checks data formats
      knoweng-platform
      Python
      •
      Other
      •5•1•0•0•Updated Mar 25, 2021Mar 25, 2021

    • TeachEnG

      Public
      A Teaching Engine for Genomics
      JavaScript
      •
      Other
      •4•11•0•2•Updated Mar 21, 2021Mar 21, 2021

    • Genvisage

      Public
      C
      •2•4•0•0•Updated Jul 13, 2020Jul 13, 2020

    • Network_Prepper

      Public
      Prepare a user submitted network for KnowEnG knowledge-guided analysis
      Python
      •
      Other
      •0•1•0•0•Updated Oct 14, 2019Oct 14, 2019

    • quickstart-demos

      Public
      Sample files and readmes for analytics pipelines on KnowEnG platform
      1•2•0•0•Updated Oct 14, 2019Oct 14, 2019

    • Spreadsheets_Transformation

      Public
      Apply various transformations (transpose, merge, ....) on one or more DataFrames
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Oct 9, 2019Oct 9, 2019

    • Samples_Clustering_Pipeline

      Public
      Clusters the sample-based columns of a spreadsheet whose rows correspond to genes
      knoweng-platform
      Python
      •
      Other
      •7•3•0•0•Updated Oct 8, 2019Oct 8, 2019

    • Feature_Prioritization_Pipeline

      Public
      General purpose features prioritization pipeline
      knoweng-platform
      Python
      •
      Other
      •2•1•0•0•Updated Oct 8, 2019Oct 8, 2019

    • KnowEnG_Pipelines_Library

      Public
      Python scripts to support KnowEnG pipelines
      knoweng-platform
      Python
      •
      Other
      •5•1•0•0•Updated Oct 8, 2019Oct 8, 2019

    • General_Clustering_Pipeline

      Public
      Clusters columns of any data frame
      knoweng-platform
      Python
      •
      Other
      •8•5•0•0•Updated Oct 8, 2019Oct 8, 2019

    • Gene_Prioritization_Pipeline

      Public
      Network-based prioritization of genes associated with phenotypes
      knoweng-platform
      Python
      •
      Other
      •6•2•1•0•Updated Oct 5, 2019Oct 5, 2019

    • InPheRNo

      Public
      InPheRNo (Inference of Phenotype-relevant Regulatory Networks) is a computational tool to reconstruct phenotype-relevant transcriptional regulatory networks (TRNs) using transcriptomic and phenotypic data.
      Python
      •
      Other
      •3•5•0•0•Updated Sep 7, 2019Sep 7, 2019

    • Kubernetes_AWS

      Public
      Configuration files and README's for setting up Kubernetes environments on AWS
      Shell
      •0•1•0•0•Updated Jun 21, 2019Jun 21, 2019

    • KnowEnG_CWL

      Public
      CWL for KnowEnG pipelines for cwltool and CGC
      knoweng-platform
      Common Workflow Language
      •
      Other
      •0•1•0•0•Updated Jun 15, 2019Jun 15, 2019

    • pgenmi

      Public
      Probabilistic Gene Expression in the Middle Analysis
      C++
      •
      Other
      •0•4•0•0•Updated Feb 19, 2019Feb 19, 2019

    • KN_Fetcher

      Public
      Download a subnetwork from the KnowEnG Knowledge Network
      Common Workflow Language
      •
      Other
      •0•1•0•0•Updated Feb 1, 2019Feb 1, 2019

    • SequencEnG

      Public
      An interactive learning resource for next-generation sequencing (NGS) techniques
      JavaScript
      •
      MIT License
      •6•26•3•0•Updated Oct 12, 2018Oct 12, 2018

    • KnowEnG_All_Pipelines

      Public
      Jupyter Notebook
      •
      Other
      •1•1•0•0•Updated Aug 23, 2018Aug 23, 2018

    • Simplified_InPheRNo_Pipeline

      Public
      Identifies 'phenotype-relevant' transcriptional regulatory networks
      Python
      •
      Other
      •2•1•0•0•Updated Aug 20, 2018Aug 20, 2018

    • knoweng.github.io

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Aug 17, 2018Aug 17, 2018

    • KN_Mapper

      Public
      Maps names to entity IDs in the KnowEnG Knowledge Network
      Python
      •
      Other
      •0•1•0•0•Updated Aug 8, 2018Aug 8, 2018

    • KnowNet_Pipeline_Tools

      Public
      Setup resources and start KN_Builder
      Makefile
      •
      Other
      •1•1•1•0•Updated Jul 15, 2018Jul 15, 2018

    • Simplified-InPheRNo

      Public
      This is the simplified version of InPheRNo
      Python
      •
      Other
      •0•0•0•0•Updated Jun 7, 2018Jun 7, 2018

    • Signature_Analysis_Pipeline

      Public
      Gene signature similarity analysis
      knoweng-platform
      Python
      •
      Other
      •8•2•0•0•Updated May 31, 2018May 31, 2018