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    374 repositories

    • RummageneXRummaGEO

      Public
      Jupyter Notebook
      •0•0•2•0•Updated Jan 24, 2025Jan 24, 2025

    • DRC-Portals

      Public
      TypeScript
      •0•0•30•6•Updated Jan 23, 2025Jan 23, 2025

    • KnowledgeGraphUIDemo

      Public
      KnowledgeGraph Demo
      Jupyter Notebook
      •11•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • GeneSetCart

      Public
      TypeScript
      •0•0•5•0•Updated Jan 23, 2025Jan 23, 2025

    • prismexp

      Public
      Advanced gene function prediction
      Python
      •
      Apache License 2.0
      •0•6•2•0•Updated Jan 22, 2025Jan 22, 2025

    • archs4dx

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•1•0•Updated Jan 22, 2025Jan 22, 2025

    • datacrosswaysarchs4

      Public
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Jan 21, 2025Jan 21, 2025

    • Playbook-Workflow-Builder

      Public
      A repository for the Playbook Workflow Builder project.
      workflowdata-sciencebioinformaticsgene-setsbiologysystems-biologygene-expressiongene-ontologyproteomicscwl
      TypeScript
      •
      Creative Commons Attribution 4.0 International
      •18•11•39•0•Updated Jan 16, 2025Jan 16, 2025

    • GenesToWordCloud

      Public
      Remake of Genes2WordCloud
      JavaScript
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • ChEA-KG

      Public
      Demo of how to build a transcription factor KG using the KG UI
      Jupyter Notebook
      •11•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • HarmonizomePythonScripts

      Public
      Jupyter Notebook
      •10•23•0•1•Updated Jan 6, 2025Jan 6, 2025

    • hypothesispage

      Public
      Simple hypothesis page, much simpler just to show PrismExp results
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • rummagene

      Public
      Python
      •
      Other
      •3•9•6•0•Updated Dec 18, 2024Dec 18, 2024

    • Gene-Knowledge-Graph

      Public
      JavaScript
      •
      Other
      •11•7•5•1•Updated Dec 16, 2024Dec 16, 2024

    • EnrichrPythonScripts

      Public
      Python Jupyter notebooks for Enrichr species databases
      Jupyter Notebook
      •0•3•0•0•Updated Dec 11, 2024Dec 11, 2024

    • rummageo

      Public
      Jupyter Notebook
      •
      Other
      •3•2•1•0•Updated Dec 11, 2024Dec 11, 2024

    • archs4py

      Public
      Python package to load and query ARCHS4 data
      Python
      •
      Apache License 2.0
      •3•15•2•0•Updated Dec 11, 2024Dec 11, 2024

    • Enrichr-Viz-Appyter

      Public
      Appyter for enrichr canvases, scatter plots, and Manhattan plots
      Jupyter Notebook
      •2•0•3•0•Updated Dec 3, 2024Dec 3, 2024

    • speedrichr

      Public
      Java
      •2•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • postgrest-drs

      Public
      A PostgREST powered DRS server
      PLpgSQL
      •
      Other
      •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • datadistillery-kg

      Public
      Jupyter Notebook
      •0•0•3•0•Updated Nov 19, 2024Nov 19, 2024

    • nbviewer

      Public
      nbconvert as a web service: Render Jupyter Notebooks as static web pages
      Python
      •
      Other
      •555•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • biojupies

      Public
      Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
      cloudbioinformaticsrna-seqjupyterpipelinenotebooksystems-biologydcppc
      HTML
      •
      Other
      •30•111•42•42•Updated Nov 12, 2024Nov 12, 2024

    • lncRNAlyzr-issues

      Public
      A repo to report issues related the lncRNAlyzr app
      0•0•3•0•Updated Nov 10, 2024Nov 10, 2024

    • TargetRanger

      Public
      JavaScript
      •
      Other
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • proxy

      Public
      A convenient and generic proxy image
      Shell
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • D2H2-site

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • appyter-catalog

      Public
      A catalog of appyter notebooks
      Jupyter Notebook
      •
      Other
      •44•35•26•5•Updated Oct 29, 2024Oct 29, 2024

    • PFOCRummage

      Public
      PLpgSQL
      •
      Other
      •3•1•0•0•Updated Oct 29, 2024Oct 29, 2024

    • Multicore-TSNE

      Public
      Parallel t-SNE implementation with Python and Torch wrappers.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •230•0•0•0•Updated Oct 28, 2024Oct 28, 2024