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    16 repositories

    • semiQ

      Public
      semiQ is a software package designed to calculate the five new semi-quantitative quantifiers described in the following article: "Bridging the Gap between Clinical and Quantitative MRI". It contains example data from both phantoms and humans.
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 22, 2024Dec 22, 2024

    • qMRI-age-similarities

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • mrGrad

      Public
      Compute qMRI spatial change along main subcortical ROI axes
      MATLAB
      •
      GNU General Public License v3.0
      •3•2•0•0•Updated Jun 6, 2024Jun 6, 2024

    • MDM_toolbox

      Public
      MDM is a software package designed to calculate the derivative of a qMRI parameter relative to MTV (MDM signature). The software and the sensetivity of MDM measurments to molecular composition are described in the following article: "Disentangling molecular alterations from water-content changes in the aging human brain using quantitative MRI."
      MATLAB
      •
      MIT License
      •3•0•0•0•Updated Feb 6, 2023Feb 6, 2023

    • M0_to_PD

      Public
      Fitting PD using the linear relationship between PD and another image.
      MATLAB
      •1•1•0•0•Updated Feb 1, 2023Feb 1, 2023

    • NisslST

      Public
      Structure tensor analysis to Nissl-stained histological slices
      MATLAB
      •
      GNU General Public License v3.0
      •4•3•0•0•Updated Oct 7, 2021Oct 7, 2021

    • SLF3-separation

      Public
      Separate SLF3 from the SLF complex, based on local MRI parameters,
      Limbo
      •1•0•0•0•Updated Feb 6, 2021Feb 6, 2021

    • age-pred-r1

      Public
      Source code for our Cerebral Cortex manuscript
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 28, 2020Sep 28, 2020

    • ClaustrumSegmentation

      Public
      MATLAB
      •
      MIT License
      •1•1•0•0•Updated Jul 26, 2020Jul 26, 2020

    • MDM_Gen_Figs

      Public
      Code associated with: Filo et. al. (2019). Disentangling molecular alterations from water-content changes in the aging human brain using quantitative MRI.
      MATLAB
      •
      MIT License
      •2•0•0•0•Updated Mar 18, 2020Mar 18, 2020

    • mrQ_Phantoms

      Public
      This code generates T1 and PD maps with B1+ and B1- corrections for phantoms scans
      MATLAB
      •0•0•0•0•Updated Sep 25, 2019Sep 25, 2019

    • VOF-T1

      Public
      Code for tractography identification of the VOF based on its T1 signature
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Sep 9, 2019Sep 9, 2019

    • freesurfer-docker

      Public
      Singularity container for Freesurfer recon-all, thalamus, brainstem, hippocampus/amygdala
      Shell
      •4•0•0•0•Updated Apr 16, 2019Apr 16, 2019

    • MR_ConductionModeling-1

      Public
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Mar 11, 2019Mar 11, 2019

    • mrGratio

      Public
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Mar 11, 2019Mar 11, 2019

    • T1-filtering-OR

      Public
      MATLAB
      •0•0•0•0•Updated Jun 21, 2018Jun 21, 2018