Repositories list

• datastew

  Public
  Python library for intelligent data stewardship using Large Language Model (LLM) embeddings

  data-harmonizationdata-stewardshiplarge-language-models

  Python

  •

  Apache License 2.0

  •0•5•11•1•Updated Mar 31, 2025Mar 31, 2025

• index

  Public
  Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization

  embeddingsdata-harmonizationsemantic-mapping+ 2data-stewardshiplarge-language-models

  TypeScript

  •

  Apache License 2.0

  •1•3•11•2•Updated Mar 31, 2025Mar 31, 2025

• PD-diagnostic-delay

  Public
  Parkinson's disease diagnostic delay analysis

  0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

• cv-extraction

  Public
  Web-Tool for LLM based CV extraction

  text-miningresume-parserllm

  Python

  •

  Apache License 2.0

  •0•1•2•0•Updated Mar 28, 2025Mar 28, 2025

• radar-ad-rmt-analysis

  Public
  Python

  •0•0•0•0•Updated Mar 26, 2025Mar 26, 2025

• ollama-docker

  Public
  Pre-build docker containers for different LLMs using Ollama

  dockerllmollama

  Shell

  •

  Apache License 2.0

  •0•1•0•0•Updated Mar 24, 2025Mar 24, 2025

• PDataViewer

  Public
  Parkinsons Disease cohort landscape visualization

  visualizationparkinsons-diseasecohort-selection+ 1common-data-model

  TypeScript

  •

  Apache License 2.0

  •0•3•4•0•Updated Mar 21, 2025Mar 21, 2025

• causal-npi-effects

  Public
  A causal machine learning framework to assess effects of non-pharmaceutical interventions on pandemic disease spread.

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

• syndat

  Public
  Synthetic data quality evaluation & visualization

  data-visualizationdata-qualitysynthetic-data

  Python

  •

  MIT License

  •0•2•1•0•Updated Mar 17, 2025Mar 17, 2025

• MMPK-SciML

  Public
  Official implementation of the paper Scientific Machine learning for predicting plasma concentrations in anti-cancer therapy

  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

• BiomarkerOntology

  Public
  The Biomarker Ontology

  0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

• psystrata-explainerdashboard

  Public
  Prototype Dashboard explaining Treatment Resistance Models, based on explainerdashboard

  explainable-ai

  Python

  •

  MIT License

  •337•1•0•0•Updated Feb 26, 2025Feb 26, 2025

• tsnepad

  Public
  AD & PD cohort variable distributions

  visualizationt-snealzheimers-disease+ 2parkinsons-diseasedata-harmonization

  HTML

  •

  MIT License

  •0•3•0•0•Updated Feb 17, 2025Feb 17, 2025

• covid-NDD-image-based-information-extraction

  Public
  Extracting structured knowledge from biomedical images using LLMs, focusing on COVID-19 and neurodegeneration. Leverages GPT-4o for image analysis and semantic triple extraction to build a biomedical knowledge graph.

  Jupyter Notebook

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• ExMed-BERT

  Public
  Python

  •1•6•0•0•Updated Feb 3, 2025Feb 3, 2025

• covid-NDD-comorbidity-NLP

  Public
  This work aims to integrate diverse, curated biological databases with a comprehensive analysis of the growing body of literature on the potential long-term neurological consequences of COVID-19 infections, employing advanced natural language processing and text mining techniques.

  Jupyter Notebook

  •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• SEEDS

  Public
  SEEDS (Similarity based Expert Embedding Decision System) is a Retrieval-Augmented Generation (RAG) based agricultural question-answering (QA) system. It is built upon a domain-specific knowledge graph (KG), representing Cedar Apple Rust disease.

  Python

  •

  Apache License 2.0

  •0•2•0•0•Updated Jan 28, 2025Jan 28, 2025

• Dynamic_Ensemble

  Public
  A Dynamic Ensemble Model for short-term Forecasting in Pandemic Situations

  Python

  •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• wasterwater_analysis

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• service-template

  Public
  0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

• mirna-disease-association-detection

  Public
  MiRNA-disease association detection through text mining methods.

  Python

  •

  Apache License 2.0

  •1•1•1•0•Updated Jun 23, 2024Jun 23, 2024

• MultiNODEs

  Public
  Python

  •2•7•0•0•Updated Apr 30, 2024Apr 30, 2024

• MultiNODEs_NewImplementation

  Public
  MultiNODEs New Implementation

  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 30, 2024Apr 30, 2024

• PD-progression-types

  Public
  R

  •

  Other

  •1•1•0•0•Updated Apr 29, 2024Apr 29, 2024

• tau-kg-extension-nlp

  Public
  Extending the Tau subgraph within the pharmacome using NLP.

  Jupyter Notebook

  •0•0•0•0•Updated Mar 27, 2024Mar 27, 2024

• adr-detection-with-knowledge-fusion

  Public
  ADR Deteciton with Knowledge Fusion Approaches

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Feb 12, 2024Feb 12, 2024

• MultiGML

  Public
  MultiGML

  Python

  •

  Apache License 2.0

  •4•9•1•0•Updated Feb 9, 2024Feb 9, 2024

• tau-kg-benchmarking-GPT

  Public
  Benchmarking the performance of GPT-based LLMs against human curated Tau KG from Human Brain Pharmacome (HBP)

  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•0•0•Updated Dec 13, 2023Dec 13, 2023

• helm-upgrade-actions

  Public
  Template to automatically build & deploy services to Kubernetes (k8s) using helm and github actions

  dockerhelmgithub-actions+ 2k8shelm-charts

  HTML

  •

  Apache License 2.0

  •0•1•0•0•Updated Dec 8, 2023Dec 8, 2023

• sam

  Public
  Terminology management service

  terminology-management

  Java

  •

  MIT License

  •0•1•2•0•Updated Dec 5, 2023Dec 5, 2023