SFB ELAINE - ELectrically Active ImplaNts

All

53 repositories

OSS-DBSv2
Public
Open-Source Simulation platform for Deep Brain Stimulation
Python
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GNU General Public License v3.0
•4•7•2•0•Updated Dec 5, 2024Dec 5, 2024
oscilloscopeR
Public
R package to work with oscilloscope recordings.
R
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GNU General Public License v3.0
•0•0•0•0•Updated Nov 5, 2024Nov 5, 2024
SI_Nrf2_NFkB_Signalling_after_Plasma_Stimulation
Public
R script for image analysis
R
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GNU General Public License v3.0
•0•0•0•0•Updated Oct 10, 2024Oct 10, 2024
cellPixels
Public
R package for statistics of fluorescence microscopy images
R
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GNU General Public License v3.0
•0•2•1•0•Updated Oct 2, 2024Oct 2, 2024
SI_lengthOfPrimaryCilia
Public
Supporting infomation to "Influence of cultivation methods on the lengths of primary cilia"
R
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GNU General Public License v3.0
•0•0•0•0•Updated Jul 26, 2024Jul 26, 2024
detectCilia
Public
R package to detect cilia and other colored structures in confocal fluorescence microscopy images
R
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GNU General Public License v3.0
•0•1•0•0•Updated Apr 4, 2024Apr 4, 2024
readCzi
Public
readCzi is an R package to read Carl Zeiss Image (CZI) files, convert them to tifs and store metadata
R
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GNU General Public License v3.0
•1•4•1•0•Updated Mar 25, 2024Mar 25, 2024
OSS-DBS
Public archive
Open-Source Simulation platform for Deep Brain Stimulation
Python
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GNU General Public License v3.0
•5•17•4•3•Updated Nov 28, 2023Nov 28, 2023
SI_Short_Stim_MG63
Public
Supporting information for publication on short-term stimulation of MG-63 cells
electrical-stimulation mg-63
R
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GNU General Public License v3.0
•0•1•0•0•Updated Feb 21, 2023Feb 21, 2023
STELLA
Public
C
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GNU General Public License v3.0
•0•0•1•0•Updated Feb 17, 2023Feb 17, 2023
WebProv
Public
Online Provenance Tool for Simulation Models
Vue
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GNU General Public License v3.0
•4•3•10•16•Updated Nov 13, 2022Nov 13, 2022
INF-Dockerfiles
Public
This is a collection of Dockerfiles used in the CRC ELAINE
Dockerfile
•0•0•0•0•Updated Nov 2, 2022Nov 2, 2022
Ca-imaging-RO-Crate
Public
RO-Crate bundles from Calcium Imaging experiments including research data and their retrospective provenance
HTML
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Creative Commons Attribution 4.0 International
•1•2•0•0•Updated Mar 8, 2022Mar 8, 2022
Structure-based-ELN2LOD
Public
Prototype translating ELN protocols into RO-Crate bundles including the research data and a retrospective provenance representation
Python
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Creative Commons Attribution 4.0 International
•1•0•0•0•Updated Mar 8, 2022Mar 8, 2022
SI_Provenance_Wnt_Family
Public
Supporting information for publication by Budde et al. (2021)
R
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GNU General Public License v3.0
•0•0•0•0•Updated Aug 11, 2021Aug 11, 2021
SI_Short_Stim
Public
Supporting information for publication on short-term stimulation of neural progenitor cells
neural-progenitors electrical-stimulation
R
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GNU General Public License v3.0
•0•1•0•0•Updated Aug 4, 2021Aug 4, 2021
Case-Study-Neurostimulator
Public
Models, generated experiments, and data for the neurostimulator case study of the paper "Making Simulation Experiments Explicit and Accessible using Experiment Schemas"
Python
•0•0•0•0•Updated Apr 13, 2021Apr 13, 2021
Case-Study-Endocytosis
Public
Models, generated experiments, and data for the endocytosis case study of the paper "Making Simulation Experiments Explicit and Accessible using Experiment Schemas""
R
•0•1•0•0•Updated Apr 13, 2021Apr 13, 2021
elabftw
Public
📓 Lab manager, experiment notebook, database for research labs
PHP
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GNU Affero General Public License v3.0
•219•0•0•0•Updated Mar 10, 2021Mar 10, 2021
elabapy
Public
Python package to interact with eLabFTW's API
Python
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GNU General Public License v3.0
•10•0•0•0•Updated Mar 3, 2021Mar 3, 2021
ckan
Public
CKAN is an open-source DMS (data management system) for powering data hubs and data portals. CKAN makes it easy to publish, share and use data. It powers datahub.io, catalog.data.gov and europeandataportal.eu/data/en/dataset among many other sites.
Python
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Other
•2k•0•0•0•Updated Feb 5, 2021Feb 5, 2021
SI_Staehlke_MDPI_Cells
Public
Supporting information for paper by Staehlke et al. 2020
R
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GNU General Public License v3.0
•0•0•0•0•Updated Dec 22, 2020Dec 22, 2020
Semantic-Modelling-CA-Imaging
Public
This repository contains the semantic model of an Electronic Lab Notebook (ELN) protocols of a Calcium Imaging study.
Creative Commons Attribution 4.0 International
•1•0•0•0•Updated Oct 15, 2020Oct 15, 2020
SI_LRP6_Endocytosis_Model
Public
Supporting information for paper by Haack, Budde, Uhrmacher (doi: 10.1242/jcs.243675).
Scala
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GNU General Public License v3.0
•0•1•0•0•Updated Jul 22, 2020Jul 22, 2020
elabimg
Public
elabftw in a docker container
HTML
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GNU Affero General Public License v3.0
•34•0•0•0•Updated May 8, 2020May 8, 2020
ImageJPlugin_Count_and_measure
Public
Plugin for ImageJ to count and measure cells
Java
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GNU General Public License v3.0
•0•0•0•0•Updated Apr 20, 2020Apr 20, 2020
Cartilage_electromechanics
Public
Python script for the manuscript_____Farooqi, A.R.; Bader, R.; van Rienen, U. Numerical Study on Electromechanics in Cartilage Tissue with Respect to Its Electrical Properties. Tissue Eng. Part B Rev. 2019, 25, 152–166. doi:10.1089/ten.teb.2018.0214.
Python
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GNU General Public License v3.0
•1•0•0•0•Updated Mar 9, 2020Mar 9, 2020
Electro-active-hydrogels
Public
Python script for the manuscript_____Farooqi, A.R.; Zimmermann, J.; Bader, R.; van Rienen, U. Numerical simulation of electro-active hydrogels for cartilage tissue engineering. Materials 2019, 12(18), 2913; https://doi.org/10.3390/ma12182913.
Python
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GNU General Public License v3.0
•1•0•0•0•Updated Mar 9, 2020Mar 9, 2020
rdmo
Public
A tool to support the planning, implementation, and organization of research data management.
Python
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Apache License 2.0
•49•0•0•0•Updated Feb 24, 2020Feb 24, 2020
imageInformation
Public
R
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GNU General Public License v3.0
•0•0•0•0•Updated Feb 4, 2020Feb 4, 2020