Repositories list

• RESTfulAPI

  Public archive
  COPaKB database access functions for the RESTful API.

  Java

  •0•0•1•0•Updated Jun 9, 2023Jun 9, 2023

• COPaKB-DB-Updater

  Public
  COPaKB database updater

  Java

  •0•0•0•0•Updated Jun 9, 2023Jun 9, 2023

• Aztec_Curation

  Public
  JavaScript

  •2•1•0•0•Updated Jun 9, 2023Jun 9, 2023

• LoginDemo

  Public
  Java

  •0•0•0•0•Updated Apr 12, 2022Apr 12, 2022

• metaprot

  Public
  JavaScript

  •1•0•0•0•Updated Apr 12, 2022Apr 12, 2022

• bd2kcrawler

  Public archive
  Java

  •0•0•0•0•Updated May 10, 2021May 10, 2021

• bd2kpubmed

  Public
  BD2KPubMed is a tool to identify trends in the literature, quantifying the impact of particular proteins on current and future research.

  Java

  •0•1•1•0•Updated Sep 28, 2020Sep 28, 2020

• OPTM_Occupancy

  Public
  R

  •1•0•0•0•Updated Aug 28, 2020Aug 28, 2020

• CV.Signature.TCP

  Public
  An open source R package to identify temporal molecular signatures from time-course omics data

  R

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated May 12, 2020May 12, 2020

• AztecRetrieval

  Public
  Bioinformatics repository crawler and updater

  JavaScript

  •1•0•3•0•Updated Oct 25, 2019Oct 25, 2019

• OPTM-Analysis

  Public
  R

  •0•0•0•0•Updated Nov 1, 2018Nov 1, 2018

• MACCRs

  Public
  Metadata Acquired from Clinical Case Reports

  Python

  •0•0•0•0•Updated Oct 26, 2018Oct 26, 2018

• Significant-Mapping

  Public
  An R Shiny App for visualizing the geographic distribution of clinical case reports.

  R

  •2•0•0•0•Updated Aug 16, 2018Aug 16, 2018

• heartCases

  Public
  A medical language processing system for case reports, particularly those involving cardiovascular disease.

  Jupyter Notebook

  •2•6•0•0•Updated Aug 15, 2018Aug 15, 2018

• Cubic-Spline-based-Temporal-Analysis-Workflow

  Public
  Our workflow designed to capture the distinct temporal molecular signatures associated with the temporal profile of various types of disease pathogenesis.

  rkmeans-clusteringassociation-analysis+ 1cubic-splines

  R

  •0•1•0•0•Updated May 25, 2018May 25, 2018

• BioComposer

  Public
  A web application to assist scientists in publishing articles to Wikipedia

  JavaScript

  •0•0•4•0•Updated Mar 6, 2018Mar 6, 2018

• aztec-text-analysis-tools

  Public
  Libraries for text analysis (e.g., entry similarity evaluation, text summarization, etc.)

  Java

  •

  Apache License 2.0

  •1•2•0•0•Updated Dec 11, 2017Dec 11, 2017

• Aztec-Duplicate

  Public
  Java

  •0•3•0•0•Updated Nov 6, 2017Nov 6, 2017

• BRAT

  Public
  Python

  •

  Other

  •0•0•0•0•Updated Nov 1, 2017Nov 1, 2017

• Aztec-Db-Expansion

  Public
  To increase the Aztec database from 10,000 to >50,000 database entries while containing up-to-date metadata. This requires scraping text and/or downloading PDFs at scale (just once) and creating a web-crawler to update the metadata for the entries. The web-crawler should run on a weekly basis.

  databaseaztecshashank

  Python

  •0•0•0•0•Updated Oct 14, 2017Oct 14, 2017

• ENABLE-DCPPC

  Public
  HTML

  •0•0•0•0•Updated Jun 28, 2017Jun 28, 2017

• Metadata-Extraction-Service

  Public
  Python scripts including Flask REST app for metadata extraction

  Python

  •0•0•0•0•Updated Jun 16, 2017Jun 16, 2017

• aztec-ir

  Public
  Aztec Information Retrieval libraries

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 17, 2016Dec 17, 2016

• trainingsetbuilder

  Public
  Build a training set for the Aztec tool classification.

  Python

  •0•0•1•0•Updated Oct 10, 2016Oct 10, 2016

• Infrastructure

  Public
  This is a documentation for new developers and developers starting on a new project to set things up

  0•0•0•0•Updated Sep 14, 2016Sep 14, 2016

• AztecArchive

  Public
  JavaScript

  •0•0•0•0•Updated Sep 11, 2016Sep 11, 2016

• VISION

  Public
  HTML

  •0•0•0•0•Updated Aug 31, 2016Aug 31, 2016

• Aztec_Pub_Classifier

  Public
  Python

  •0•0•0•0•Updated Aug 17, 2016Aug 17, 2016

• ProteoSeq-Django

  Public
  ProteoSeq web service rebuilt with Django

  JavaScript

  •0•0•0•0•Updated Aug 3, 2016Aug 3, 2016

• bd2kccc-website-issues

  Public
  Issue tracker for BD2KCCC website

  0•0•4•0•Updated Jul 28, 2016Jul 28, 2016