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@chicagopcdc Pediatric Cancer Data Commons

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    49 repositories

    • gearbox-matching

      Public
      Gearbox backend for matching rules
      Python
      •
      Other
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • fence

      Public
      AuthN/AuthZ OIDC Service
      Python
      •
      Other
      •48•0•0•1•Updated Jan 17, 2025Jan 17, 2025

    • amanuensis

      Public
      Service to handle project request within the GEN3 environment
      Python
      •
      Other
      •3•0•0•4•Updated Jan 17, 2025Jan 17, 2025

    • gen3_etl

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•1•Updated Jan 16, 2025Jan 16, 2025

    • d4cg-modeling

      Public
      0•1•1•0•Updated Jan 15, 2025Jan 15, 2025

    • cloud-automation

      Public
      Automation for standing up Gen3 commons on AWS, GCP, Azure, and on-prem
      Shell
      •
      Other
      •67•0•0•2•Updated Jan 14, 2025Jan 14, 2025

    • datadictionary

      Public
      Gen3 Generic Data dictionary
      Python
      •
      Other
      •37•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • dictionaryutils

      Public
      python wrapper and metaschema for datadictionary
      Python
      •
      Other
      •7•0•0•1•Updated Jan 14, 2025Jan 14, 2025

    • chicagopcdc.github.io

      Public
      Repository of PCDC Documentation
      HTML
      •1•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • arborist

      Public
      Gen3 policy engine
      Go
      •
      Apache License 2.0
      •16•0•0•1•Updated Jan 3, 2025Jan 3, 2025

    • guppy

      Public
      Server that support GraphQL queries on data from elasticsearch
      JavaScript
      •
      Other
      •12•0•0•1•Updated Dec 30, 2024Dec 30, 2024

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      JavaScript
      •
      Other
      •44•0•0•1•Updated Dec 23, 2024Dec 23, 2024

    • c3dc_etl

      Public
      Repository of ETL scripts for the Childhood Cancer Clinical Data Commons (C3DC)
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • userPortalDataModel

      Public
      data model for project request tool, save queries and analytics
      Python
      •
      Other
      •0•0•0•1•Updated Dec 10, 2024Dec 10, 2024

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      •
      Apache License 2.0
      •24•0•0•1•Updated Nov 26, 2024Nov 26, 2024

    • pelican

      Public
      Sower jobs for PFB export & import
      Python
      •
      Apache License 2.0
      •4•0•0•1•Updated Nov 23, 2024Nov 23, 2024

    • sheepdog

      Public
      API for herding data submissions
      Python
      •
      Other
      •17•0•0•1•Updated Nov 23, 2024Nov 23, 2024

    • peregrine

      Public
      GraphQL search API service
      Python
      •
      Other
      •9•0•0•1•Updated Nov 23, 2024Nov 23, 2024

    • gearbox-frontend

      Public
      PedAL GEARBOx web UI app
      TypeScript
      •
      Other
      •5•2•1•1•Updated Nov 7, 2024Nov 7, 2024

    • pcdc_analysis_scripts

      Public
      Repository of scripts to transform PCDC raw data
      R
      •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

    • pcdcutils

      Public
      Misc python utilities for PCDC projects
      Python
      •
      Other
      •1•0•0•0•Updated Nov 1, 2024Nov 1, 2024

    • RedcapCdmExport

      Public
      Python
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • doccano

      Public
      Open source annotation tool for machine learning practitioners.
      Python
      •
      MIT License
      •1.7k•0•0•2•Updated Oct 9, 2024Oct 9, 2024

    • pcdc-aws-client

      Public
      Aws client package
      Python
      •
      Other
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • PcdcAnalysisTools

      Public
      microservice for analysis tools
      Python
      •
      Other
      •1•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • pcdc-poc-tableone-microservice

      Public
      microservice for pcdc poc tableone
      Python
      •
      Other
      •2•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • pcdc-poc-tableone-form

      Public
      react-dynamic-form
      JavaScript
      •
      Other
      •2•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • jenkins

      Public
      Jenkins pipeline for testing
      Shell
      •1•1•0•0•Updated Aug 25, 2024Aug 25, 2024

    • sociome_portal

      Public
      HTML
      •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • cdis-manifest

      Public
      Manifests tracking service versions to release to each environment
      Shell
      •
      Apache License 2.0
      •7•0•0•0•Updated Jul 31, 2024Jul 31, 2024