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    27 repositories

    • visualTools

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 22, 2024Jan 22, 2024

    • FinchScope

      Public
      Single photon tools for Neuroscience
      MATLAB
      •
      MIT License
      •25•35•3•1•Updated Dec 30, 2023Dec 30, 2023

    • uo-printimage

      Public
      UO printimage copy
      MATLAB
      •0•0•0•0•Updated Aug 24, 2021Aug 24, 2021

    • multi-channel-tweetynet

      Public
      Automated annotation of bird song with multi-channel time-frequency input
      deep-learningbirdsongconvolutional-neural-networkspectral-analysisbirdsong-recognitionbirdsong-spectrogram
      Python
      •
      MIT License
      •0•5•0•0•Updated Jul 16, 2021Jul 16, 2021

    • intan-frontend

      Public
      intan_frontend
      MATLAB
      •
      Other
      •3•0•0•0•Updated May 18, 2021May 18, 2021

    • printimage

      Public
      MATLAB
      •1•1•14•0•Updated Feb 6, 2020Feb 6, 2020

    • video-capture

      Public
      Capture and control from the miniature microscopes for near real time analysis.
      Swift
      •
      MIT License
      •2•2•3•1•Updated Jun 22, 2019Jun 22, 2019

    • lab-operations

      Public
      Code and information that is useful for day-to-day lab operations.
      JavaScript
      •1•1•0•0•Updated Feb 5, 2019Feb 5, 2019

    • syllable-detector-swift

      Public
      Using Core Audio to perform STFT and pass the amplitude data into a Matlab trained neural network.
      Swift
      •
      MIT License
      •3•17•2•0•Updated Sep 11, 2018Sep 11, 2018

    • find-audio

      Public
      Dynamic time warping for audio matching and alignment
      MATLAB
      •
      MIT License
      •1•21•0•0•Updated Mar 15, 2018Mar 15, 2018

    • syllable-detector-runtime-labview

      Public
      LabVIEW runtime of Ben's syllable detector
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 22, 2017Mar 22, 2017

    • syllable-detector-matlab

      Public
      MATLAB-based neural network detector.
      MATLAB
      •
      Other
      •2•0•0•0•Updated Mar 22, 2017Mar 22, 2017

    • syllable-detector-learn

      Public
      Matlab offline learner for the neural network syllable detector
      MATLAB
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Mar 22, 2017Mar 22, 2017

    • OperationSleepCode

      Public
      MATLAB
      •0•0•0•1•Updated Dec 5, 2016Dec 5, 2016

    • Calcium

      Public
      Shared calcium imaging code
      MATLAB
      •0•0•0•0•Updated Oct 20, 2016Oct 20, 2016

    • HVC-Stability-Analysis

      Public
      Analysis code for the Manuscript 'Unstable Neurons support a stable behavior'
      0•0•0•0•Updated Oct 9, 2016Oct 9, 2016

    • implant-histology-analysis

      Public
      MATLAB interface for annotating histology images of implants and calculating basic statistics.
      MATLAB
      •
      MIT License
      •0•2•0•0•Updated Sep 20, 2016Sep 20, 2016

    • labpy

      Public
      Utility python scripts people in the Gardner Lab use to speed up their workflow
      Python
      •1•2•2•0•Updated Jul 26, 2016Jul 26, 2016

    • bird-monitoring

      Public
      Software for monitoring the evironment in bird boxes
      HTML
      •1•0•0•0•Updated Jun 17, 2016Jun 17, 2016

    • Data-modeling

      Public
      Here we keep useful data modeling code
      MATLAB
      •0•0•0•0•Updated May 7, 2016May 7, 2016

    • nyedack-s

      Public
      Session-based NiDAQ acquisition in MATLAB
      MATLAB
      •1•0•0•0•Updated Feb 24, 2016Feb 24, 2016

    • zftftb

      Public
      The [Z]ebra [F]inch [T]ime [F]requency [T]ool[b]ox
      MATLAB
      •
      Other
      •3•0•0•0•Updated Jan 29, 2016Jan 29, 2016

    • spikoclust

      Public
      SPIKOsaurus CLUST: A MATLAB toolbox for split-and-merge-expectation-maximization-based spike sorting
      MATLAB
      •
      Other
      •1•0•0•0•Updated Jan 28, 2016Jan 28, 2016

    • acontrast

      Public
      Tools for computing acoustic contrast using auditory contours and amplitude envelope
      MATLAB
      •
      Other
      •1•1•0•0•Updated Jan 18, 2016Jan 18, 2016

    • SM_SeepCode

      Public
      Archived code- original edit
      MATLAB
      •0•0•0•0•Updated Nov 19, 2015Nov 19, 2015

    • nyedack

      Public
      MATLAB based National Instruments acquisition toolbox
      MATLAB
      •1•0•0•0•Updated Jul 6, 2015Jul 6, 2015

    • acontour

      Public
      Library for computing auditory contours
      MATLAB
      •
      Other
      •2•1•0•0•Updated Dec 18, 2014Dec 18, 2014