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    44 repositories

    • goat-data

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•14•0•Updated Feb 22, 2025Feb 22, 2025

    • blobtoolkit

      Public
      Interactive quality assessment of genome assemblies
      JavaScript
      •
      MIT License
      •12•93•40•23•Updated Feb 21, 2025Feb 21, 2025

    • genomehubs

      Public
      Search and explore genomic metadata, Earth BioGenome Project progress and assembly features
      genomicsdockerbioinformatics
      JavaScript
      •
      MIT License
      •6•16•53•35•Updated Feb 21, 2025Feb 21, 2025

    • blobtk

      Public
      Core functionality shared across BlobToolKit tools
      Rust
      •
      MIT License
      •2•3•13•1•Updated Feb 14, 2025Feb 14, 2025

    • goat-ui

      Public
      JavaScript
      •
      MIT License
      •0•0•1•0•Updated Feb 10, 2025Feb 10, 2025

    • goat-nlp

      Public
      Natural language search across the tree of life
      Python
      •
      MIT License
      •4•3•4•6•Updated Jan 11, 2025Jan 11, 2025

    • kinfin

      Public
      Taxon-aware analysis of clustered protein sequences
      Python
      •
      GNU General Public License v3.0
      •12•0•1•2•Updated Oct 21, 2024Oct 21, 2024

    • molluscdb-ui

      Public
      UI configuration for molluscdb.genomehubs.org
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • boat-ui

      Public
      UI customisation for BoaT
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • goat-cli

      Public
      Command Line Interface for Genomes on a Tree.
      Rust
      •
      MIT License
      •1•12•14•0•Updated Aug 13, 2024Aug 13, 2024

    • lepbase-ui

      Public
      UI configuration for lepbase.genomehubs.org
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

    • molluscdb-data

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 21, 2024May 21, 2024

    • lepbase-data

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

    • kinfin-integration

      Public
      Integrating KinFin Proteome Cluster analyses into Genome Browsing environments
      MIT License
      •0•1•0•0•Updated Mar 18, 2024Mar 18, 2024

    • undici

      Public
      An HTTP/1.1 client, written from scratch for Node.js
      JavaScript
      •
      MIT License
      •597•0•0•0•Updated Apr 11, 2023Apr 11, 2023

    • genomehubs-ui

      Public archive
      [Archived] Frontend for Genomes on a Tree
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated May 3, 2022May 3, 2022

    • genomehubs-api

      Public archive
      [Archived] Genomes on a Tree OpenAPI test
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated May 3, 2022May 3, 2022

    • easy-mirror-docker

      Public
      Docker container to install the EnsEMBL API and web code to set up an EnsEMBL mirror (separate mysql host required)
      Shell
      •
      MIT License
      •0•1•1•0•Updated Mar 16, 2022Mar 16, 2022

    • gh-ensembl-plugin

      Public
      Generic Ensembl plugin for genomehubs sites
      JavaScript
      •
      Other
      •0•0•1•0•Updated Mar 16, 2022Mar 16, 2022

    • h5ai-docker

      Public
      Customisable Docker container to set up an h5ai download server
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Feb 10, 2022Feb 10, 2022

    • molluscdb-plugin

      Public
      HTML
      •
      Apache License 2.0
      •1•0•3•0•Updated Dec 17, 2020Dec 17, 2020

    • tolkein

      Public
      Tree of Life kit of evolutionary informatics novelties
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 2, 2020Jul 2, 2020

    • easy-import

      Public
      Code to simplify import of data into Ensembl databases
      Perl
      •
      MIT License
      •2•0•0•0•Updated Feb 12, 2020Feb 12, 2020

    • sequenceserver-docker

      Public
      JavaScript
      •
      MIT License
      •1•0•0•1•Updated Oct 30, 2019Oct 30, 2019

    • compara-docker

      Public
      Genomehubs docker container for making orthogroups, running genetrees, and creating compara db
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Aug 15, 2019Aug 15, 2019

    • search-docker

      Public
      Perl
      •0•0•1•0•Updated Jul 5, 2019Jul 5, 2019

    • template-plugin

      Public
      Template Ensembl plugin for GenomeHubs sites
      Perl
      •
      Apache License 2.0
      •6•0•0•0•Updated May 31, 2019May 31, 2019

    • template

      Public
      generic configuration files for GenomeHubs setup
      HTML
      •
      MIT License
      •1•0•1•0•Updated May 16, 2019May 16, 2019

    • easy-import-docker

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated May 15, 2019May 15, 2019

    • busco-docker

      Public
      Docker contaner to run BUSCO
      Shell
      •
      MIT License
      •1•1•0•0•Updated May 15, 2019May 15, 2019