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@nch-igm Computational Genomics Group

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    17 repositories

    • snvstory

      Public
      Rapid and accurate ancestry inference using SNVs.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•18•7•1•Updated Feb 24, 2025Feb 24, 2025

    • VarRNA

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jan 27, 2025Jan 27, 2025

    • lncCHDNet

      Public
      HTML
      •0•1•0•0•Updated Nov 26, 2024Nov 26, 2024

    • RNAseq_dimensionality_reduction

      Public
      R
      •0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • precisionFDA

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • PatternsInTheSilence

      Public
      Deciphering Synonymous Codon Usage with Information Theory
      Jupyter Notebook
      •0•0•0•0•Updated Mar 25, 2024Mar 25, 2024

    • deidVCF

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 24, 2024Mar 24, 2024

    • CNVoyant

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Mar 15, 2024Mar 15, 2024

    • CAVaLRi

      Public
      The Clinical Assessment of Variant Likelihood Ratios (CAVaLRi) approach assigns likelihoods to potentially pathogenic germline variants via a likelihood ratio (LR) framework.
      Python
      •
      Other
      •1•2•1•0•Updated Jan 2, 2024Jan 2, 2024

    • PBFLIP

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•2•1•0•Updated Nov 11, 2022Nov 11, 2022

    • gaptools

      Public
      dbGaP data validation tool repo
      Shell
      •
      Other
      •11•0•0•0•Updated Mar 8, 2022Mar 8, 2022

    • clin-msi

      Public
      Python
      •1•4•3•0•Updated Nov 5, 2021Nov 5, 2021

    • EnFusion

      Public
      The ENsemble Fusion (EnFusion) repo contains a Dockerfile to build a Docker Image that can overlap outputs from 7 fusion detection algorithms, to identify high confidence fusion events.
      cancer-genomicstranscriptomicsfusion-detection
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•7•0•0•Updated Sep 15, 2021Sep 15, 2021

    • nch-igm-ensemble-fusion-detection

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•0•0•Updated Jun 16, 2021Jun 16, 2021

    • rna-stability

      Public
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •1•6•0•0•Updated Dec 18, 2020Dec 18, 2020

    • AutoFilter

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Apr 15, 2020Apr 15, 2020

    • ViennaRNA

      Public
      Copy of ViennaRNA with updates to not write out temporary .ps files
      C
      •
      Other
      •1•2•0•0•Updated Jun 28, 2019Jun 28, 2019