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    11 repositories

    • cell2sentence

      Public
      Cell2Sentence: Teaching Large Language Models the Language of Biology
      Jupyter Notebook
      •
      Other
      •6•33•2•1•Updated Dec 8, 2024Dec 8, 2024

    • CINEMA-OT

      Public
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •5•28•1•0•Updated Oct 28, 2024Oct 28, 2024

    • cell2sentence-ft

      Public
      Cell2Sentence turns scRNA-seq data into text for LLM training.
      bioinformaticsscrna-seqsingle-cellscrna-seq-data
      Python
      •
      Other
      •14•84•4•0•Updated Sep 4, 2024Sep 4, 2024

    • BrainLM

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •18•83•9•0•Updated Jun 6, 2024Jun 6, 2024

    • CST

      Public
      Continuous Spatiotemporal Transformer
      Python
      •
      MIT License
      •5•18•0•0•Updated May 30, 2023May 30, 2023

    • CPSC482

      Public
      0•0•0•0•Updated Apr 12, 2023Apr 12, 2023

    • HBEC_SARS-CoV-2_scRNA-seq

      Public
      Supplementary data for "Single-cell longitudinal analysis of SARS-CoV-2 infection in human bronchial epithelial cells"
      Jupyter Notebook
      •
      MIT License
      •2•5•2•0•Updated Feb 4, 2021Feb 4, 2021

    • self-supervsed_edge_feats

      Public
      code for "Self-supervised edge features for improved Graph Neural Network training", <arxivlink>
      Jupyter Notebook
      •6•0•0•0•Updated Jan 4, 2021Jan 4, 2021

    • encoding_wasserstein_metrics

      Public
      Using set encoders to encode Wasserstein Spaces
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Nov 2, 2020Nov 2, 2020

    • single-cell_neurodegeneration

      Public
      Code for Tejwani L* & Ravindra NG* et al. 2020
      Jupyter Notebook
      •0•1•0•0•Updated Aug 24, 2020Aug 24, 2020

    • scGAT

      Public
      Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attention Networks" to appear in ACM Proceedings. <https://arxiv.org/abs/2002.07128>
      Python
      •
      MIT License
      •5•16•2•0•Updated May 27, 2020May 27, 2020