From a518fe6badfaf44056d89aed7ac1970f57c80cc9 Mon Sep 17 00:00:00 2001 From: Adam Taranto Date: Fri, 27 Sep 2024 00:47:15 +1000 Subject: [PATCH 1/7] test token --- .github/workflows/ruff.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/ruff.yml b/.github/workflows/ruff.yml index fb55aaa..51a6022 100644 --- a/.github/workflows/ruff.yml +++ b/.github/workflows/ruff.yml @@ -13,6 +13,7 @@ jobs: - uses: actions/checkout@v4 with: ref: ${{ github.sha }} + token: ${{ secrets.ACTION_TOKEN }} - uses: chartboost/ruff-action@v1 with: src: './src/python' From fce427eebb89f78a334c901cd2fc01860469e2d6 Mon Sep 17 00:00:00 2001 From: Adam Taranto Date: Fri, 27 Sep 2024 00:47:46 +1000 Subject: [PATCH 2/7] break formatting test --- src/python/tests/test_basic.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/python/tests/test_basic.py b/src/python/tests/test_basic.py index 0992b91..39bce92 100644 --- a/src/python/tests/test_basic.py +++ b/src/python/tests/test_basic.py @@ -17,7 +17,7 @@ def test_count(): cg = oxli.KmerCountTable(4) kmer = "ATCG" - assert cg.get(kmer) == 0 + assert cg.get(kmer) ==0 assert cg.count(kmer) == 1 assert cg.get(kmer) == 1 From 460454a65dca25a8a65af2a4f38e17cce5580ad3 Mon Sep 17 00:00:00 2001 From: Adamtaranto Date: Thu, 26 Sep 2024 14:50:17 +0000 Subject: [PATCH 3/7] Style fixes by Ruff --- src/python/tests/test_basic.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/python/tests/test_basic.py b/src/python/tests/test_basic.py index 39bce92..0992b91 100644 --- a/src/python/tests/test_basic.py +++ b/src/python/tests/test_basic.py @@ -17,7 +17,7 @@ def test_count(): cg = oxli.KmerCountTable(4) kmer = "ATCG" - assert cg.get(kmer) ==0 + assert cg.get(kmer) == 0 assert cg.count(kmer) == 1 assert cg.get(kmer) == 1 From e4fdfdf3cb62b5095c681a0c3a73acbc6ee5d65e Mon Sep 17 00:00:00 2001 From: Adam Taranto Date: Sat, 28 Sep 2024 15:07:27 +1000 Subject: [PATCH 4/7] Test concurrency to kill previous running actions on brnach --- .github/workflows/ruff.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/ruff.yml b/.github/workflows/ruff.yml index 51a6022..69f8940 100644 --- a/.github/workflows/ruff.yml +++ b/.github/workflows/ruff.yml @@ -3,9 +3,9 @@ on: [pull_request] jobs: ruff: runs-on: ubuntu-latest - #concurrency: - # group: ${{ github.ref }} - # cancel-in-progress: true + concurrency: + group: ${{ github.ref }} + cancel-in-progress: true permissions: # Give the default GITHUB_TOKEN write permission to commit and push the changed files. contents: write From d8a8f40bf643b8afa2ff970772f7eaab97a6b3eb Mon Sep 17 00:00:00 2001 From: Adam Taranto Date: Sat, 28 Sep 2024 15:07:53 +1000 Subject: [PATCH 5/7] test antagonise ruff --- src/python/tests/test_basic.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/python/tests/test_basic.py b/src/python/tests/test_basic.py index 0992b91..39bce92 100644 --- a/src/python/tests/test_basic.py +++ b/src/python/tests/test_basic.py @@ -17,7 +17,7 @@ def test_count(): cg = oxli.KmerCountTable(4) kmer = "ATCG" - assert cg.get(kmer) == 0 + assert cg.get(kmer) ==0 assert cg.count(kmer) == 1 assert cg.get(kmer) == 1 From 473180c8b0f55bc5b81ee2571a8f3df4122b818e Mon Sep 17 00:00:00 2001 From: Adamtaranto Date: Sat, 28 Sep 2024 05:10:33 +0000 Subject: [PATCH 6/7] Style fixes by Ruff --- src/python/tests/test_basic.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/python/tests/test_basic.py b/src/python/tests/test_basic.py index 39bce92..0992b91 100644 --- a/src/python/tests/test_basic.py +++ b/src/python/tests/test_basic.py @@ -17,7 +17,7 @@ def test_count(): cg = oxli.KmerCountTable(4) kmer = "ATCG" - assert cg.get(kmer) ==0 + assert cg.get(kmer) == 0 assert cg.count(kmer) == 1 assert cg.get(kmer) == 1 From 3bcab58b2bbbb11d6226327952fee29ba4e579e0 Mon Sep 17 00:00:00 2001 From: Adam Taranto Date: Mon, 30 Sep 2024 19:40:38 +1000 Subject: [PATCH 7/7] rm concurrency --- .github/workflows/ruff.yml | 3 --- 1 file changed, 3 deletions(-) diff --git a/.github/workflows/ruff.yml b/.github/workflows/ruff.yml index 69f8940..73c7e72 100644 --- a/.github/workflows/ruff.yml +++ b/.github/workflows/ruff.yml @@ -3,9 +3,6 @@ on: [pull_request] jobs: ruff: runs-on: ubuntu-latest - concurrency: - group: ${{ github.ref }} - cancel-in-progress: true permissions: # Give the default GITHUB_TOKEN write permission to commit and push the changed files. contents: write