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Where is the data folder? #9

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worsteggs opened this issue Nov 2, 2022 · 2 comments
Open

Where is the data folder? #9

worsteggs opened this issue Nov 2, 2022 · 2 comments

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@worsteggs
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Hi all,
Thanks for your excellent work!
I want to reanalyzed this repo, but I didn't find the /data folder you mention for the script needing to read the anndata in the data folder. Do I miss anything?

Hope to get your help.

Yours,
Zilch

@dmnburrows
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Hey there,

I'd like to follow up with this please, I'm also looking for the data folder but can't seem to find it anywhere.

Any help would be much appreciated!
Cheers
Dom

@sbooeshaghi
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Hi- the data folder is generated by preprocessing the FASTQ files using scripts found here: https://github.com/pachterlab/BYVSTZP_2020/tree/master/analysis/scripts

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3 participants