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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file. See standard-version for commit guidelines.

2.8.1 (2021-06-05)

Features

  • :sparks: update to consume trapi v1.1 apis (5b2f465)
  • transform graph data from v1.1 to legacy format, uncomment code (b1d2413)

Bug Fixes

  • add details to meta graph error (1d36a18)

2.8.0 (2021-05-25)

Features

  • ✨ added meta_knowledge_graph endpoints by team and ip (8882df4)

Bug Fixes

  • 🐛 fix meta_kg endpoint for a given API (85ff733)

2.7.0 (2021-05-16)

Features

  • ✨ add handler logics for creating v1 metakg (c1c5011)
  • ✨ add metakg routes to index (7c7b8e1)
  • ✨ create route for metakg (cd379bc)

2.6.0 (2021-05-11)

Features

  • ✨ upgrade handler to support trapi 1.1.0 (3cec3f2)
  • trapi v1.1.0 support, update handler (3109a8a)

Bug Fixes

  • 🐛 change from NCBIGENE to NCBIGene (88d6035)

2.5.0 (2021-04-23)

Bug Fixes

  • 🐛 fix issue when output ids contain special characters (898483a)

2.4.0 (2021-04-23)

Features

  • ✨ allow user to set MAX_QUERIES_PER_MIN as env (8686092)
  • ✨ set rate limit to max 3 queries per min (aeea89c)

Bug Fixes

  • 🐛 fix unable to resolve biocarta id issue (551e4b1)
  • 🔥 temporarily disable text mining co-occurrence kp (d214a4d)
  • ✨ re-enable clinical risk kp (4464dfc)

2.3.0 (2021-04-20)

Features

  • ✨ set a hard limit of 3s for all TRAPI APIs (db96e0b)

Bug Fixes

  • 🐛 disable Automat CTD due to poor perform (3753b2c)
  • 🐛 fix wrong output type (714f9ab)

2.2.0 (2021-04-02)

2.1.0 (2021-04-02)

Features

  • ✨ add /test/query endpoint to support user specified smartapi spec (c75e44d)
  • ✨ add additional node attributes to knowledge graph (4fb93e3)
  • ✨ add cron job to periodically pull from /predicates endpoint (94461b1)
  • ✨ add num_of_participants property for pathway (3d9f820)
  • ✨ have bte only use a specified number of APIs (7fa1732)
  • ✨ support restricting /predicates to only api names provide (9260ec9)
  • ✨ update local predicates file and smartapi specs (425093e)

Bug Fixes

  • 🐛 add support for resolving protein ids (500161a)
  • 🐛 fix api_response_transform bug (4d911d6)
  • 🐛 fix cache related bug causing query failure (3bd87ae)
  • 🐛 fix id resolver failure issue (eecbe4f)
  • 🐛 fix missing biolink prefix issue (153b601)
  • 🐛 fix typo (5b32009)
  • 🐛 fix wrong edge id in query results (4bb1aa7)

2.0.1 (2021-03-12)

Bug Fixes

  • 🐛 fix wrong uniprot issuue (92fac04)

2.0.0 (2021-03-09)

Features

  • ✨ have /query and /v1/query the same behavior (2db1ff8)
  • ✨ use redis to enable cacheing query results (dd42583)

Bug Fixes

  • 🐛 check semantic type match input type before creating bte edge (2731602)
  • 🐛 fix wrong logic to determine if redis cache is enabled (fdf71ab)
  • 🐛 fix wrongly generated cache hash id (49a9734)
  • 🐛 remove non-edge data from knowledge graph edge attributes (500a66b)
  • 🐛 stringify all values of dbIDs (0919e7d)

1.12.0 (2021-02-19)

Features

  • ✨ adapt to new output from id resolver module (1b7d1b8)

Bug Fixes

  • 🐛 add missing next parameter (d943307)
  • 🐛 fix /performance endpoint not working issue (6f59473)
  • 🐛 fix wrong generate curie logic (8c0e585)

1.11.1 (2021-02-19)

1.11.0 (2021-02-09)

Features

  • ✨ run cron job in expressjs event loop (d2d44bc)
  • ✨ set cron job to pull smartapi spec from API every 10 mins (8f8dbe1)
  • ✨ update metakg endpoint to read from local copy of SmartAPI specs (c5f40d0)

1.10.0 (2021-02-02)

Features

  • ✨ add debug and log for qedge2bteedge module (abc9265)
  • ✨ add debug message for nodeUpdateHandler module (6cf9b5d)
  • ✨ look for symmetric predicate if qEdge is reversed (a167345)
  • ✨ support edge reversal (862560d)

Bug Fixes

  • 🐛 check if user provided predicate is undefined (56eb1fe)
  • 🐛 modify query predicate to fit biolink json file (fc91a31)
  • 🐛 synchronize the predicate in kg with the qg (658aa43)
  • 🐛 terminate the query if one of the critical intermediate step return empty results (15ee30a)
  • 🐛 use predicate from api if no predicate supplied in qg (a073f99)

1.9.2 (2021-02-01)

Bug Fixes

  • 🐛 fix issue regarding missing type information for node attributes (7cf6119)

1.9.1 (2021-01-27)

Bug Fixes

  • 🐛 fix CHANGELOG bug (f72c660)
  • 🐛 fix wrong url in CHANGELOG and autogenerate tools (f927d5e)

1.9.0 (2021-01-26)

Features

  • ✨ disable id resolution module for text mining KPs (f3f5067)
  • ✨ include call apis error message in log (4ff93b0)

Bug Fixes

  • 🐛 Fix issue related to publication extraction (cfe3c3c)

1.8.0 (2021-01-26)

Features

  • ✨ include call apis error message in log (4ff93b0)

Bug Fixes

  • 🐛 Fix issue related to publication extraction (cfe3c3c)

1.7.0 (2021-01-26)

Features

  • ✨ include call apis error message in log (4ff93b0)

Bug Fixes

  • 🐛 Fix issue related to publication extraction (cfe3c3c)

1.6.0 (2021-01-26)

Features

  • ✨ include call apis error message in log (4ff93b0)

Bug Fixes

  • 🐛 Fix issue related to publication extraction (cfe3c3c)

1.5.0 (2021-01-26)

Features

  • ✨ include call apis error message in log (4ff93b0)

1.4.0 (2021-01-26)

Features

  • ✨ Enable logging for call-apis module (406a62b)

1.3.0 (2021-01-26)

Features

  • ✨ Enable BTE TRAPI to query SmartAPI on real time (be00d80)

Bug Fixes

  • 🐛 change log level to warning if no smartapi edge found (082759f)
  • 🐛 Display correct log message based on whether smartapi edges are found or not (54cf072)
  • added jenkinsfile (b35c484)
  • update the image name (77c74f7)

1.2.0 (2021-01-26)

Features

  • ✨ Enable BTE TRAPI to query SmartAPI on real time (be00d80)

Bug Fixes

1.1.1 (2021-01-25)

Bug Fixes

  • 🐛 change teamName to team_name for api input (95e71ce)