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Column order are the same: feature,barcode,counts
Difference: rows of the mtx from BD are sorted by feature (ascending) first then by barcode for each feature, but cellranger by barcode ascending first then feature(?)
BD Rhapsody produces mtx and tsv files, link to BD page
BD mtx vs cellranger mtx:
Column order are the same: feature,barcode,counts
Difference: rows of the mtx from BD are sorted by feature (ascending) first then by barcode for each feature, but cellranger by barcode ascending first then feature(?)
BD Rhapsody:
cellranger
Example BD dataset can be downloaded here
The error I'm seeing when importing BD matrices is usually something like
axis 0 index 565 exceeds matrix dimension 57
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