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need help understanding output columns for lite_format = F ! #73

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pswaminath opened this issue Dec 11, 2023 · 0 comments
Open

need help understanding output columns for lite_format = F ! #73

pswaminath opened this issue Dec 11, 2023 · 0 comments

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@pswaminath
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Hi,
I ran the example file test.R which uses vcf file. Here there is a different output format other than lite_format. After running the following code,

run(genome_file,
data = "msk",
do_assign = T,
do_mva = F,
tumor_type = 'breast',
lite_format = F,
catalog_name = 'cosmic_v2_inhouse')

I see output with columns where the column names end with

  1. wl
  2. c_cdiff
  3. c1_ml, c2_ml, c3_ml, c4_ml
  4. and column rat_sig3

Could you please explain what these columns are?

Thank you!
PS

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