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How to run with custom reference (es assembly) #11

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telatin opened this issue Jan 13, 2021 · 0 comments
Open

How to run with custom reference (es assembly) #11

telatin opened this issue Jan 13, 2021 · 0 comments

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@telatin
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telatin commented Jan 13, 2021 •
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I'd like to run bamsnap with a custom reference (assembly output).
This works disabling the "gene" track with:

bamsnap -draw coordinates bamplot coverage base \ 
   -out test.png -bam aln.bam -pos NODE_1_length_31064_cov_4.851893:1000 -ref contigs.fasta

A warning could be useful to figure this out.
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@telatin